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Items: 1 to 50 of 73

1.

Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes.

Sorokin DY, Khijniak TV, Kostrikina NA, Elcheninov AG, Toshchakov SV, Bale NJ, Damsté JSS, Kublanov IV.

Syst Appl Microbiol. 2018 Jul;41(4):355-362. doi: 10.1016/j.syapm.2018.04.002. Epub 2018 Apr 27.

2.

Development and comparison of chromatographic methods for the analysis of long chain diols and alkenones in biological materials and sediment.

de Bar MW, Hopmans EC, Verweij M, Dorhout DJC, Damsté JSS, Schouten S.

J Chromatogr A. 2017 Oct 27;1521:150-160. doi: 10.1016/j.chroma.2017.09.037. Epub 2017 Sep 19.

PMID:
28947206
3.

Pheno- and Genotyping of Hopanoid Production in Acidobacteria.

Damsté JSS, Rijpstra WIC, Dedysh SN, Foesel BU, Villanueva L.

Front Microbiol. 2017 Jun 8;8:968. doi: 10.3389/fmicb.2017.00968. eCollection 2017.

4.

Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats.

Sorokin DY, Messina E, Smedile F, Roman P, Damsté JSS, Ciordia S, Mena MC, Ferrer M, Golyshin PN, Kublanov IV, Samarov NI, Toshchakov SV, La Cono V, Yakimov MM.

ISME J. 2017 May;11(5):1245-1260. doi: 10.1038/ismej.2016.203. Epub 2017 Jan 20.

5.

A progressively wetter climate in southern East Africa over the past 1.3 million years.

Johnson TC, Werne JP, Brown ET, Abbott A, Berke M, Steinman BA, Halbur J, Contreras S, Grosshuesch S, Deino A, Scholz CA, Lyons RP, Schouten S, Damsté JS.

Nature. 2016 Sep 8;537(7619):220-224. doi: 10.1038/nature19065. Epub 2016 Aug 10.

PMID:
27509851
6.

Elucidation and identification of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry.

Moore EK, Hopmans EC, Rijpstra WI, Villanueva L, Damsté JS.

Rapid Commun Mass Spectrom. 2016 Mar 30;30(6):739-50.

PMID:
27281845
7.

Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the 'lipid divide'.

Villanueva L, Schouten S, Damsté JS.

Environ Microbiol. 2017 Jan;19(1):54-69. doi: 10.1111/1462-2920.13361. Epub 2016 Jul 7.

PMID:
27112361
8.

Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes.

Sorokin DY, Abbas B, Merkel AY, Rijpstra WI, Damsté JS, Sukhacheva MV, van Loosdrecht MC.

Int J Syst Evol Microbiol. 2015 Oct;65(10):3739-45. doi: 10.1099/ijsem.0.000488. Epub 2015 Jul 29.

PMID:
26228570
9.

Comparison of the effect of salinity on the D/H ratio of fatty acids of heterotrophic and photoautotrophic microorganisms.

Heinzelmann SM, Chivall D, M'Boule D, Sinke-Schoen D, Villanueva L, Damsté JS, Schouten S, van der Meer MT.

FEMS Microbiol Lett. 2015 May;362(10). pii: fnv065. doi: 10.1093/femsle/fnv065. Epub 2015 Apr 15.

PMID:
25883110
10.

A re-evaluation of the archaeal membrane lipid biosynthetic pathway.

Villanueva L, Damsté JS, Schouten S.

Nat Rev Microbiol. 2014 Jun;12(6):438-48. doi: 10.1038/nrmicro3260. Epub 2014 May 7. Review.

PMID:
24801941
11.

Ercella succinigenes gen. nov., sp. nov., an anaerobic succinate-producing bacterium.

van Gelder AH, Sousa DZ, Rijpstra WI, Damsté JS, Stams AJ, Sánchez-Andrea I.

Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2449-54. doi: 10.1099/ijs.0.058966-0. Epub 2014 Apr 28.

PMID:
24776531
12.

Genetic biomarkers of the sterol-biosynthetic pathway in microalgae.

Villanueva L, Rijpstra WI, Schouten S, Damsté JS.

Environ Microbiol Rep. 2014 Feb;6(1):35-44. doi: 10.1111/1758-2229.12106. Epub 2013 Oct 17.

PMID:
24596261
13.

Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3.

Sorokin DY, Gumerov VM, Rakitin AL, Beletsky AV, Damsté JS, Muyzer G, Mardanov AV, Ravin NV.

Environ Microbiol. 2014 Jun;16(6):1549-65. doi: 10.1111/1462-2920.12284. Epub 2013 Oct 21.

PMID:
24112708
14.

Diversity and distribution of a key sulpholipid biosynthetic gene in marine microbial assemblages.

Villanueva L, Bale N, Hopmans EC, Schouten S, Damsté JS.

Environ Microbiol. 2014 Mar;16(3):774-87. doi: 10.1111/1462-2920.12202. Epub 2013 Jul 24.

PMID:
23879770
15.

Linking isoprenoidal GDGT membrane lipid distributions with gene abundances of ammonia-oxidizing Thaumarchaeota and uncultured crenarchaeotal groups in the water column of a tropical lake (Lake Challa, East Africa).

Buckles LK, Villanueva L, Weijers JW, Verschuren D, Damsté JS.

Environ Microbiol. 2013 Sep;15(9):2445-62. doi: 10.1111/1462-2920.12118. Epub 2013 Apr 8.

PMID:
23560451
16.

A novel marine nitrite-oxidizing Nitrospira species from Dutch coastal North Sea water.

Haaijer SC, Ji K, van Niftrik L, Hoischen A, Speth D, Jetten MS, Damsté JS, Op den Camp HJ.

Front Microbiol. 2013 Mar 18;4:60. doi: 10.3389/fmicb.2013.00060. eCollection 2013.

17.

Asymmetric synthesis of cyclo-archaeol and β-glucosyl cyclo-archaeol.

Ferrer C, Fodran P, Barroso S, Gibson R, Hopmans EC, Damsté JS, Schouten S, Minnaard AJ.

Org Biomol Chem. 2013 Apr 21;11(15):2482-92. doi: 10.1039/c3ob27277j. Epub 2013 Feb 26.

PMID:
23440078
18.

Thermodesulfobacterium geofontis sp. nov., a hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park.

Hamilton-Brehm SD, Gibson RA, Green SJ, Hopmans EC, Schouten S, van der Meer MT, Shields JP, Damsté JS, Elkins JG.

Extremophiles. 2013 Mar;17(2):251-63. doi: 10.1007/s00792-013-0512-1. Epub 2013 Jan 24.

PMID:
23345010
19.

Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soil.

Damsté JS, Rijpstra WI, Hopmans EC, Jung MY, Kim JG, Rhee SK, Stieglmeier M, Schleper C.

Appl Environ Microbiol. 2012 Oct;78(19):6866-74. doi: 10.1128/AEM.01681-12. Epub 2012 Jul 20.

20.

Temperature-induced increase in methane release from peat bogs: a mesocosm experiment.

van Winden JF, Reichart GJ, McNamara NP, Benthien A, Damsté JS.

PLoS One. 2012;7(6):e39614. doi: 10.1371/journal.pone.0039614. Epub 2012 Jun 29.

21.

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi.

Sorokin DY, Lücker S, Vejmelkova D, Kostrikina NA, Kleerebezem R, Rijpstra WI, Damsté JS, Le Paslier D, Muyzer G, Wagner M, van Loosdrecht MC, Daims H.

ISME J. 2012 Dec;6(12):2245-56. doi: 10.1038/ismej.2012.70. Epub 2012 Jul 5.

22.

Telmatocola sphagniphila gen. nov., sp. nov., a novel dendriform planctomycete from northern wetlands.

Kulichevskaya IS, Serkebaeva YM, Kim Y, Rijpstra WI, Damsté JS, Liesack W, Dedysh SN.

Front Microbiol. 2012 Apr 17;3:146. doi: 10.3389/fmicb.2012.00146. eCollection 2012.

23.

Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood.

Kulichevskaya IS, Kostina LA, Valásková V, Rijpstra WI, Damsté JS, de Boer W, Dedysh SN.

Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1512-20. doi: 10.1099/ijs.0.034819-0. Epub 2011 Aug 19.

PMID:
21856984
24.

Detection, isolation, and characterization of acidophilic methanotrophs from Sphagnum mosses.

Kip N, Ouyang W, van Winden J, Raghoebarsing A, van Niftrik L, Pol A, Pan Y, Bodrossy L, van Donselaar EG, Reichart GJ, Jetten MS, Damsté JS, Op den Camp HJ.

Appl Environ Microbiol. 2011 Aug 15;77(16):5643-54. doi: 10.1128/AEM.05017-11. Epub 2011 Jul 1.

25.

A multi-proxy study of anaerobic ammonium oxidation in marine sediments of the Gullmar Fjord, Sweden.

Brandsma J, van de Vossenberg J, Risgaard-Petersen N, Schmid MC, Engström P, Eurenius K, Hulth S, Jaeschke A, Abbas B, Hopmans EC, Strous M, Schouten S, Jetten MS, Damsté JS.

Environ Microbiol Rep. 2011 Jun;3(3):360-6. doi: 10.1111/j.1758-2229.2010.00233.x. Epub 2011 Jan 10.

PMID:
23761282
26.

Bryocella elongata gen. nov., sp. nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008.

Dedysh SN, Kulichevskaya IS, Serkebaeva YM, Mityaeva MA, Sorokin VV, Suzina NE, Rijpstra WI, Damsté JS.

Int J Syst Evol Microbiol. 2012 Mar;62(Pt 3):654-64. doi: 10.1099/ijs.0.031898-0. Epub 2011 May 6.

PMID:
21551329
27.

13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.

Damsté JS, Rijpstra WI, Hopmans EC, Weijers JW, Foesel BU, Overmann J, Dedysh SN.

Appl Environ Microbiol. 2011 Jun;77(12):4147-54. doi: 10.1128/AEM.00466-11. Epub 2011 Apr 22.

28.

Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments.

Pitcher A, Hopmans EC, Mosier AC, Park SJ, Rhee SK, Francis CA, Schouten S, Damsté JS.

Appl Environ Microbiol. 2011 May;77(10):3468-77. doi: 10.1128/AEM.02758-10. Epub 2011 Mar 25.

29.

Singulisphaera rosea sp. nov., a planctomycete from acidic Sphagnum peat, and emended description of the genus Singulisphaera.

Kulichevskaya IS, Detkova EN, Bodelier PL, Rijpstra WI, Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):118-23. doi: 10.1099/ijs.0.025924-0. Epub 2011 Feb 18.

PMID:
21335501
30.

Fossilized glycolipids reveal past oceanic N2 fixation by heterocystous cyanobacteria.

Bauersachs T, Speelman EN, Hopmans EC, Reichart GJ, Schouten S, Damsté JS.

Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19190-4. doi: 10.1073/pnas.1007526107. Epub 2010 Oct 21.

31.

(Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage.

Balk M, Mehboob F, van Gelder AH, Rijpstra WI, Damsté JS, Stams AJ.

Appl Microbiol Biotechnol. 2010 Sep;88(2):595-603. doi: 10.1007/s00253-010-2788-8. Epub 2010 Aug 3.

32.

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria.

Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, Rattei T, Damsté JS, Spieck E, Le Paslier D, Daims H.

Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13479-84. doi: 10.1073/pnas.1003860107. Epub 2010 Jul 12.

33.

Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats.

van der Meer MT, Klatt CG, Wood J, Bryant DA, Bateson MM, Lammerts L, Schouten S, Damsté JS, Madigan MT, Ward DM.

J Bacteriol. 2010 Jun;192(12):3033-42. doi: 10.1128/JB.01610-09. Epub 2010 Apr 2.

34.

Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic group I.1b Archaeon.

Pitcher A, Rychlik N, Hopmans EC, Spieck E, Rijpstra WI, Ossebaar J, Schouten S, Wagner M, Damsté JS.

ISME J. 2010 Apr;4(4):542-52. doi: 10.1038/ismej.2009.138. Epub 2009 Dec 24.

PMID:
20033067
35.

Microbial diversity and community structure of a highly active anaerobic methane-oxidizing sulfate-reducing enrichment.

Jagersma GC, Meulepas RJ, Heikamp-de Jong I, Gieteling J, Klimiuk A, Schouten S, Damsté JS, Lens PN, Stams AJ.

Environ Microbiol. 2009 Dec;11(12):3223-32. doi: 10.1111/j.1462-2920.2009.02036.x. Epub 2009 Aug 24.

PMID:
19703218
36.

Rapid analysis of long-chain glycolipids in heterocystous cyanobacteria using high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry.

Bauersachs T, Hopmans EC, Compaoré J, Stal LJ, Schouten S, Damsté JS.

Rapid Commun Mass Spectrom. 2009 May;23(9):1387-94. doi: 10.1002/rcm.4009.

PMID:
19347866
37.

A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis.

Rattray JE, Strous M, Op den Camp HJ, Schouten S, Jetten MS, Damsté JS.

Biol Direct. 2009 Feb 16;4:8. doi: 10.1186/1745-6150-4-8.

38.

Zavarzinella formosa gen. nov., sp. nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog.

Kulichevskaya IS, Baulina OI, Bodelier PL, Rijpstra WI, Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2009 Feb;59(Pt 2):357-64. doi: 10.1099/ijs.0.002378-0.

PMID:
19196778
39.

A reanalysis of phospholipid fatty acids as ecological biomarkers for methanotrophic bacteria.

Bodelier PL, Gillisen MJ, Hordijk K, Damsté JS, Rijpstra WI, Geenevasen JA, Dunfield PF.

ISME J. 2009 May;3(5):606-17. doi: 10.1038/ismej.2009.6. Epub 2009 Feb 5.

PMID:
19194481
40.

Northern hemisphere controls on tropical southeast African climate during the past 60,000 years.

Tierney JE, Russell JM, Huang Y, Damsté JS, Hopmans EC, Cohen AS.

Science. 2008 Oct 10;322(5899):252-5. doi: 10.1126/science.1160485. Epub 2008 Sep 11.

41.

Singulisphaera acidiphila gen. nov., sp. nov., a non-filamentous, Isosphaera-like planctomycete from acidic northern wetlands.

Kulichevskaya IS, Ivanova AO, Baulina OI, Bodelier PL, Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1186-93. doi: 10.1099/ijs.0.65593-0.

PMID:
18450711
42.

Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy.

Coolen MJ, Talbot HM, Abbas BA, Ward C, Schouten S, Volkman JK, Damsté JS.

Environ Microbiol. 2008 Jul;10(7):1783-803. doi: 10.1111/j.1462-2920.2008.01601.x. Epub 2008 Apr 8.

PMID:
18397311
43.

Isotopic evidence for glaciation during the Cretaceous supergreenhouse.

Bornemann A, Norris RD, Friedrich O, Beckmann B, Schouten S, Damsté JS, Vogel J, Hofmann P, Wagner T.

Science. 2008 Jan 11;319(5860):189-92. doi: 10.1126/science.1148777.

44.

Structural identification of the beta-hydroxy fatty acid-based diester preen gland waxes of shorebirds.

Rijpstra WI, Reneerkens J, Piersma T, Damsté JS.

J Nat Prod. 2007 Nov;70(11):1804-7. Epub 2007 Oct 26.

PMID:
17960891
45.

Tetraether membrane lipids of Candidatus "Aciduliprofundum boonei", a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents.

Schouten S, Baas M, Hopmans EC, Reysenbach AL, Damsté JS.

Extremophiles. 2008 Jan;12(1):119-24. Epub 2007 Sep 28.

46.

Structural characterization of diabolic acid-based tetraester, tetraether and mixed ether/ester, membrane-spanning lipids of bacteria from the order Thermotogales.

Damsté JS, Rijpstra WI, Hopmans EC, Schouten S, Balk M, Stams AJ.

Arch Microbiol. 2007 Dec;188(6):629-41. Epub 2007 Jul 21.

47.

Expression of annual cycles in preen wax composition in red knots: constraints on the changing phenotype.

Reneerkens J, Piersma T, Damsté JS.

J Exp Zool A Ecol Genet Physiol. 2007 Mar 1;307(3):127-39.

PMID:
17397066
48.

Analytical methodology for TEX86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry.

Schouten S, Huguet C, Hopmans EC, Kienhuis MV, Damsté JS.

Anal Chem. 2007 Apr 1;79(7):2940-4. Epub 2007 Feb 21.

PMID:
17311408
50.

Ongoing buildup of refractory organic carbon in boreal soils during the Holocene.

Smittenberg RH, Eglinton TI, Schouten S, Damsté JS.

Science. 2006 Nov 24;314(5803):1283-6.

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