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Corrigendum to "Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens" [J. Biotechnol. 380 (2020) 35-39].

Daly P, Peng M, Casado López S, Lipzen A, Ng V, Singan VR, Wang M, Grigoriev IV, de Vries RP, Mäkelä MR.

J Biotechnol. 2020 Feb 10;309:142. doi: 10.1016/j.jbiotec.2020.01.006. Epub 2020 Jan 14. No abstract available.


Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation.

Daly P, Peng M, Mitchell HD, Kim YM, Ansong C, Brewer H, de Gijsel P, Lipton MS, Markillie LM, Nicora CD, Orr G, Wiebenga A, Hildén KS, Kabel MA, Baker SE, Mäkelä MR, de Vries RP.

Environ Microbiol. 2019 Dec 25. doi: 10.1111/1462-2920.14907. [Epub ahead of print]


Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens.

Daly P, Peng M, Casado López S, Lipzen A, Ng V, Singan VR, Wang M, Grigoriev IV, de Vries RP, Mäkelä MR.

J Biotechnol. 2020 Jan 20;308:35-39. doi: 10.1016/j.jbiotec.2019.11.014. Epub 2019 Nov 25. Erratum in: J Biotechnol. 2020 Feb 10;309:142.


Impact of participation in continuing medical education small group learning (CME-SGL) on the stress, morale, and professional isolation of rurally-based GPs: a qualitative study in Ireland.

Dowling S, Last J, Finnegan H, Daly P, Bourke J, Hanrahan C, Harrold P, McCombe G, Cullen W.

BJGP Open. 2019 Oct 29. pii: bjgpopen19X101673. doi: 10.3399/bjgpopen19X101673. [Epub ahead of print]


Update: Influenza Activity - United States and Worldwide, May 19-September 28, 2019, and Composition of the 2020 Southern Hemisphere Influenza Vaccine.

Epperson S, Davis CT, Brammer L, Abd Elal AI, Ajayi N, Barnes J, Budd AP, Burns E, Daly P, Dugan VG, Fry AM, Jang Y, Johnson SJ, Kniss K, Kondor R, Grohskopf LA, Gubareva L, Merced-Morales A, Sessions W, Stevens J, Wentworth DE, Xu X, Jernigan D.

MMWR Morb Mortal Wkly Rep. 2019 Oct 11;68(40):880-884. doi: 10.15585/mmwr.mm6840a3.


Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens.

Daly P, Peng M, Di Falco M, Lipzen A, Wang M, Ng V, Grigoriev IV, Tsang A, Mäkelä MR, de Vries RP.

Appl Environ Microbiol. 2019 Nov 14;85(23). pii: e01828-19. doi: 10.1128/AEM.01828-19. Print 2019 Dec 1.


Grounding medical ethics in philosophy of medicine: problematic and potential.

Daly P.

Theor Med Bioeth. 2019 Jun;40(3):169-182. doi: 10.1007/s11017-019-09491-y.


Reconciling randomized trial evidence on proximal versus distal outcomes, with application to trials of influenza vaccination for healthcare workers.

Gustafson R, Gustafson P, Daly P.

Stat Med. 2019 Sep 30;38(22):4323-4333. doi: 10.1002/sim.8299. Epub 2019 Jul 17.


Outcomes of the First 1,000 Total Hip and Total Knee Arthroplasties at a Same-day Surgery Center Using a Rapid-recovery Protocol.

Hoeffel DP, Daly PJ, Kelly BJ, Giveans MR.

J Am Acad Orthop Surg Glob Res Rev. 2019 Mar 19;3(3):e022. doi: 10.5435/JAAOSGlobal-D-19-00022. eCollection 2019 Mar.


Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.

Casado López S, Peng M, Daly P, Andreopoulos B, Pangilinan J, Lipzen A, Riley R, Ahrendt S, Ng V, Barry K, Daum C, Grigoriev IV, Hildén KS, Mäkelä MR, de Vries RP.

Microbiol Resour Announc. 2019 May 2;8(18). pii: e00264-19. doi: 10.1128/MRA.00264-19.


Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass.

Benocci T, Aguilar-Pontes MV, Kun RS, Lubbers RJM, Lail K, Wang M, Lipzen A, Ng V, Grigoriev IV, Seiboth B, Daly P, de Vries RP.

Biotechnol Biofuels. 2019 Apr 9;12:81. doi: 10.1186/s13068-019-1422-y. eCollection 2019.


Paratesticular sarcomas: a case series and literature review.

Keenan RA, Nic An Riogh AU, Stroiescu A, Fuentes A, Heneghan J, Cullen IM, Daly PJ.

Ther Adv Urol. 2019 Jan 8;11:1756287218818029. doi: 10.1177/1756287218818029. eCollection 2019 Jan-Dec.


The dangers of hurling-genital injuries arising in the modern game.

Keenan RA, Riogh ANA, Fuentes A, Daly P, Cullen IM.

Ir J Med Sci. 2019 Aug;188(3):1087-1091. doi: 10.1007/s11845-019-01969-x. Epub 2019 Jan 19.


Dichomitus squalens partially tailors its molecular responses to the composition of solid wood.

Daly P, López SC, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, Baker SE, Bruijnincx PCA, Hildén KS, Grigoriev IV, Mäkelä MR, de Vries RP.

Environ Microbiol. 2018 Nov;20(11):4141-4156. doi: 10.1111/1462-2920.14416. Epub 2018 Oct 18.


Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails.

Benocci T, Daly P, Aguilar-Pontes MV, Lail K, Wang M, Lipzen A, Ng V, Grigoriev IV, de Vries RP.

Biotechnol J. 2019 Apr;14(4):e1800185. doi: 10.1002/biot.201800185. Epub 2018 Oct 8.


RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family.

Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C.

Plant Biotechnol J. 2019 Mar;17(3):594-607. doi: 10.1111/pbi.13001. Epub 2018 Oct 2.


A concise guide to clinical reasoning.

Daly P.

J Eval Clin Pract. 2018 Oct;24(5):966-972. doi: 10.1111/jep.12940. Epub 2018 Apr 30.


To tube or not to tube? Utilising a tubeless antegrade ureteric stenting system in a tertiary referral hospital.

Looney AT, Daly PJA, Cullen IM, MacMahon P, Kelly IMG.

Ir J Med Sci. 2019 Feb;188(1):283-288. doi: 10.1007/s11845-018-1826-x. Epub 2018 Apr 26.


Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens.

Casado López S, Peng M, Issak TY, Daly P, de Vries RP, Mäkelä MR.

Appl Environ Microbiol. 2018 May 17;84(11). pii: e00403-18. doi: 10.1128/AEM.00403-18. Print 2018 Jun 1.


Epididymo-orchitis caused by enteric organisms in men > 35 years old: beyond fluoroquinolones.

Ryan L, Daly P, Cullen I, Doyle M.

Eur J Clin Microbiol Infect Dis. 2018 Jun;37(6):1001-1008. doi: 10.1007/s10096-018-3212-z. Epub 2018 Feb 15. Review.


A senescence-delaying pre-culture medium for transcriptomics of Podospora anserina.

Benocci T, de Vries RP, Daly P.

J Microbiol Methods. 2018 Mar;146:33-36. doi: 10.1016/j.mimet.2018.01.010. Epub 2018 Feb 3.


Probenecid Improves Cardiac Function in Patients With Heart Failure With Reduced Ejection Fraction In Vivo and Cardiomyocyte Calcium Sensitivity In Vitro.

Robbins N, Gilbert M, Kumar M, McNamara JW, Daly P, Koch SE, Conway G, Effat M, Woo JG, Sadayappan S, Rubinstein J.

J Am Heart Assoc. 2018 Jan 13;7(2). pii: e007148. doi: 10.1161/JAHA.117.007148.


ARA1 regulates not only l-arabinose but also d-galactose catabolism in Trichoderma reesei.

Benocci T, Aguilar-Pontes MV, Kun RS, Seiboth B, de Vries RP, Daly P.

FEBS Lett. 2018 Jan;592(1):60-70. doi: 10.1002/1873-3468.12932. Epub 2017 Dec 19.


Philosophy of medicine 2017: reviewing the situation.

Daly P.

Theor Med Bioeth. 2017 Dec;38(6):483-488. doi: 10.1007/s11017-017-9430-z.


Genetic transformation of the white-rot fungus Dichomitus squalens using a new commercial protoplasting cocktail.

Daly P, Slaghek GG, Casado López S, Wiebenga A, Hilden KS, de Vries RP, Mäkelä MR.

J Microbiol Methods. 2017 Dec;143:38-43. doi: 10.1016/j.mimet.2017.10.001. Epub 2017 Oct 4.


Feasibility and safety of exercise stress testing using an anti-gravity treadmill with Tc-99m tetrofosmin single-photon emission computed tomography (SPECT) myocardial perfusion imaging: A pilot non-randomized controlled study.

Daly P, Kayse R, Rudick S, Robbins N, Scheler J, Harris D, O'Donnell R, Dwivedi AK, Gerson MC.

J Nucl Cardiol. 2018 Aug;25(4):1092-1097. doi: 10.1007/s12350-017-1045-2. Epub 2017 Aug 31.


The Hidden Burden of Outpatient Repeat PSA Testing in a Prospective Cohort.

Browne E, O'Malley K, Connolly S, O'Kelly F, Lundon D, Daly P, Galvin D, Hegarty N.

Ir Med J. 2017 May 10;110(5):564.


Seven-year-olds' aggressive choices in a computer game can be predicted in infancy.

Hay DF, Johansen MK, Daly P, Hashmi S, Robinson C, Collishaw S, van Goozen S.

Dev Sci. 2018 May;21(3):e12576. doi: 10.1111/desc.12576. Epub 2017 Jul 24.


Highly variable recurrence of tsunamis in the 7,400 years before the 2004 Indian Ocean tsunami.

Rubin CM, Horton BP, Sieh K, Pilarczyk JE, Daly P, Ismail N, Parnell AC.

Nat Commun. 2017 Jul 19;8:16019. doi: 10.1038/ncomms16019.


Physiological Profile and Activity Pattern of Minor Gaelic Football Players.

Cullen BD, Roantree MT, McCarren AL, Kelly DT, OʼConnor PL, Hughes SM, Daly PG, Moyna NM.

J Strength Cond Res. 2017 Jul;31(7):1811-1820. doi: 10.1519/JSC.0000000000001667.


Methicillin-resistant Staphylococcus aureus as a uropathogen in an Irish setting.

Looney AT, Redmond EJ, Davey NM, Daly PJ, Troy C, Carey BF, Cullen IM.

Medicine (Baltimore). 2017 Apr;96(14):e4635. doi: 10.1097/MD.0000000000004635.


Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.

Daly P, van Munster JM, Blythe MJ, Ibbett R, Kokolski M, Gaddipati S, Lindquist E, Singan VR, Barry KW, Lipzen A, Ngan CY, Petzold CJ, Chan LJG, Pullan ST, Delmas S, Waldron PR, Grigoriev IV, Tucker GA, Simmons BA, Archer DB.

Biotechnol Biofuels. 2017 Feb 7;10:35. doi: 10.1186/s13068-017-0700-9. eCollection 2017.


Declining rates of health problems associated with crack smoking during the expansion of crack pipe distribution in Vancouver, Canada.

Prangnell A, Dong H, Daly P, Milloy MJ, Kerr T, Hayashi K.

BMC Public Health. 2017 Feb 3;17(1):163. doi: 10.1186/s12889-017-4099-9.


An integral approach to health science and healthcare.

Daly P.

Theor Med Bioeth. 2017 Feb;38(1):15-40. doi: 10.1007/s11017-017-9396-x.


Biologic prosthetic aortic malfunction: is there a role for percutaneous treatment (transcatheter aortic valve implantation)?

Tamburino CI, Pilato G, Tamburino C, Daly P.

J Cardiovasc Med (Hagerstown). 2017 Jan;18 Suppl 1:e170-e176. doi: 10.2459/JCM.0000000000000460. No abstract available.


Compromized DNA repair as a basis for identification of cancer radiotherapy patients with extreme radiosensitivity.

Lobachevsky P, Leong T, Daly P, Smith J, Best N, Tomaszewski J, Thompson ER, Li N, Campbell IG, Martin RF, Martin OA.

Cancer Lett. 2016 Dec 28;383(2):212-219. doi: 10.1016/j.canlet.2016.09.010. Epub 2016 Sep 28.


Proton therapy in paediatric oncology: an Irish perspective.

Lee KA, O'Sullivan C, Daly P, Pears J, Owens C, Timmermann B, Ares C, Combs SE, Indelicato D, Capra M.

Ir J Med Sci. 2017 Aug;186(3):577-582. doi: 10.1007/s11845-016-1520-9. Epub 2016 Oct 15.


A mindful eating intervention: A theory-guided randomized anti-obesity feasibility study with adolescent Latino females.

Daly P, Pace T, Berg J, Menon U, Szalacha LA.

Complement Ther Med. 2016 Oct;28:22-8. doi: 10.1016/j.ctim.2016.07.006. Epub 2016 Aug 1.


Psychological Burden and Gender Differences in Methamphetamine-Dependent Individuals in Treatment.

Simpson JL, Grant KM, Daly PM, Kelley SG, Carlo G, Bevins RA.

J Psychoactive Drugs. 2016 Sep-Oct;48(4):261-9. doi: 10.1080/02791072.2016.1213470.


Protocol of the impact of alternative social assistance disbursement on drug-related harm (TASA) study: a randomized controlled trial to evaluate changes to payment timing and frequency among people who use illicit drugs.

Richardson L, Laing A, Milloy MJ, Maynard R, Nosyk B, Marshall B, Grafstein E, Daly P, Wood E, Montaner J, Kerr T.

BMC Public Health. 2016 Jul 29;16:668. doi: 10.1186/s12889-016-3304-6.


High prevalence of adenomatous colorectal polyps in young cancer survivors treated with abdominal radiation therapy: results of a prospective trial.

Daly PE, Samiee S, Cino M, Gryfe R, Pollett A, Ng A, Constine LS, Hodgson DC.

Gut. 2017 Oct;66(10):1797-1801. doi: 10.1136/gutjnl-2016-311501. Epub 2016 Jul 13.


Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression.

Daly P, van Munster JM, Kokolski M, Sang F, Blythe MJ, Malla S, Velasco de Castro Oliveira J, Goldman GH, Archer DB.

Fungal Genet Biol. 2017 May;102:4-21. doi: 10.1016/j.fgb.2016.04.005. Epub 2016 May 2.


Near real-time monitoring of HIV transmission hotspots from routine HIV genotyping: an implementation case study.

Poon AF, Gustafson R, Daly P, Zerr L, Demlow SE, Wong J, Woods CK, Hogg RS, Krajden M, Moore D, Kendall P, Montaner JS, Harrigan PR.

Lancet HIV. 2016 May;3(5):e231-8. doi: 10.1016/S2352-3018(16)00046-1. Epub 2016 Apr 7.


A single-centre analysis of 30 patients with relapsed germ cell tumours treated with the TI-CE regimen.

O'Kane G, Bracken-Clarke D, Gardiner N, Lee G, Ni Chonghaile M, Power D, Daly PA, McCaffrey J, Bacon CL, Conneally E, Flynn C, Vandenberghe E, Kennedy MJ, Browne PV, O'Donnell DM, Hayden PJ.

Bone Marrow Transplant. 2016 Jun;51(6):856-9. doi: 10.1038/bmt.2015.354. Epub 2016 Feb 8. No abstract available.


RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger.

Pullan ST, Daly P, Delmas S, Ibbett R, Kokolski M, Neiteler A, van Munster JM, Wilson R, Blythe MJ, Gaddipati S, Tucker GA, Archer DB.

Fungal Biol Biotechnol. 2014 Nov 17;1(1):1-14. doi: 10.1186/s40694-014-0003-x.


Clinical nurses lead the charge with EHR.

Daly P.

Nursing. 2015 Oct;45(10):25-6. doi: 10.1097/01.NURSE.0000471426.47075.d2. No abstract available.


Palliative sedation, foregoing life-sustaining treatment, and aid-in-dying: what is the difference?

Daly P.

Theor Med Bioeth. 2015 Jun;36(3):197-213. doi: 10.1007/s11017-015-9329-5.


Preliminary test of the LFA rapid evaluation of activity in lupus (LFA-REAL): an efficient outcome measure correlates with validated instruments.

Askanase A, Li X, Pong A, Shum K, Kamp S, Carthen F, Aberle T, Hanrahan L, Daly P, Giles J, Merrill JT.

Lupus Sci Med. 2015 Mar 4;2(1):e000075. doi: 10.1136/lupus-2014-000075. eCollection 2015.


Building surgical capacity in developing countries: lessons from Haiti and Honduras.

Hottinger DG, Patel BM, Frechette RL, Walent W, Augustin ME, Daly PJ.

J Health Care Poor Underserved. 2015 Feb;26(1):278-86. doi: 10.1353/hpu.2015.0011.


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