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Items: 42


The effect of root exudates on rhizosphere water dynamics.

Cooper LJ, Daly KR, Hallett PD, Koebernick N, George TS, Roose T.

Proc Math Phys Eng Sci. 2018 Sep;474(2217):20180149. doi: 10.1098/rspa.2018.0149. Epub 2018 Sep 5.


Imaging microstructure of the barley rhizosphere: particle packing and root hair influences.

Koebernick N, Daly KR, Keyes SD, Bengough AG, Brown LK, Cooper LJ, George TS, Hallett PD, Naveed M, Raffan A, Roose T.

New Phytol. 2019 Mar;221(4):1878-1889. doi: 10.1111/nph.15516. Epub 2018 Nov 20.


Determination of macro-scale soil properties from pore scale structures: image-based modelling of poroelastic structures.

Daly KR, Keyes SD, Roose T.

Proc Math Phys Eng Sci. 2018 Jul;474(2215):20170745. doi: 10.1098/rspa.2017.0745. Epub 2018 Jul 11.


Determination of macro-scale soil properties from pore-scale structures: model derivation.

Daly KR, Roose T.

Proc Math Phys Eng Sci. 2018 Jan;474(2209):20170141. doi: 10.1098/rspa.2017.0141. Epub 2018 Jan 31.


Fluid flow in porous media using image-based modelling to parametrize Richards' equation.

Cooper LJ, Daly KR, Hallett PD, Naveed M, Koebernick N, Bengough AG, George TS, Roose T.

Proc Math Phys Eng Sci. 2017 Nov;473(2207):20170178. doi: 10.1098/rspa.2017.0178. Epub 2017 Nov 22.


Investigation of microvascular morphological measures for skeletal muscle tissue oxygenation by image-based modelling in three dimensions.

Zeller-Plumhoff B, Daly KR, Clough GF, Schneider P, Roose T.

J R Soc Interface. 2017 Oct;14(135). pii: 20170635. doi: 10.1098/rsif.2017.0635.


High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation.

Koebernick N, Daly KR, Keyes SD, George TS, Brown LK, Raffan A, Cooper LJ, Naveed M, Bengough AG, Sinclair I, Hallett PD, Roose T.

New Phytol. 2017 Oct;216(1):124-135. doi: 10.1111/nph.14705. Epub 2017 Jul 31.


Effects of clinical and environmental factors on bronchoalveolar antibody responses to Pneumocystis jirovecii: A prospective cohort study of HIV+ patients.

Blount RJ, Daly KR, Fong S, Chang E, Grieco K, Greene M, Stone S, Balmes J, Miller RF, Walzer PD, Huang L.

PLoS One. 2017 Jul 10;12(7):e0180212. doi: 10.1371/journal.pone.0180212. eCollection 2017.


Quantification of root water uptake in soil using X-ray computed tomography and image-based modelling.

Daly KR, Tracy SR, Crout NMJ, Mairhofer S, Pridmore TP, Mooney SJ, Roose T.

Plant Cell Environ. 2018 Jan;41(1):121-133. doi: 10.1111/pce.12983. Epub 2017 Jul 5.


Image-based modelling of nutrient movement in and around the rhizosphere.

Daly KR, Keyes SD, Masum S, Roose T.

J Exp Bot. 2016 Feb;67(4):1059-70. doi: 10.1093/jxb/erv544. Epub 2016 Jan 5.


Homogenization of two fluid flow in porous media.

Daly KR, Roose T.

Proc Math Phys Eng Sci. 2015 Apr 8;471(2176):20140564.


Assessing the influence of the rhizosphere on soil hydraulic properties using X-ray computed tomography and numerical modelling.

Daly KR, Mooney SJ, Bennett MJ, Crout NM, Roose T, Tracy SR.

J Exp Bot. 2015 Apr;66(8):2305-14. doi: 10.1093/jxb/eru509. Epub 2015 Mar 4.


Multiscale models of colloidal dispersion of particles in nematic liquid crystals.

Bennett TP, D'Alessandro G, Daly KR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062505. Epub 2014 Dec 15.


Mathematical modelling of the Phloem: the importance of diffusion on sugar transport at osmotic equilibrium.

Payvandi S, Daly KR, Zygalakis KC, Roose T.

Bull Math Biol. 2014 Nov;76(11):2834-65. doi: 10.1007/s11538-014-0035-7. Epub 2014 Oct 28.


A mathematical model of water and nutrient transport in xylem vessels of a wheat plant.

Payvandi S, Daly KR, Jones DL, Talboys P, Zygalakis KC, Roose T.

Bull Math Biol. 2014 Mar;76(3):566-96. doi: 10.1007/s11538-013-9932-4. Epub 2014 Feb 21.


Multiscale modelling of hydraulic conductivity in vuggy porous media.

Daly KR, Roose T.

Proc Math Phys Eng Sci. 2014 Feb 8;470(2162):20130383.


Humoral immune responses to Pneumocystis jirovecii antigens in HIV-infected and uninfected young children with pneumocystis pneumonia.

Djawe K, Daly KR, Levin L, Zar HJ, Walzer PD.

PLoS One. 2013 Dec 26;8(12):e82783. doi: 10.1371/journal.pone.0082783. eCollection 2013.


Ambient air pollution associated with suppressed serologic responses to Pneumocystis jirovecii in a prospective cohort of HIV-infected patients with Pneumocystis pneumonia.

Blount RJ, Djawe K, Daly KR, Jarlsberg LG, Fong S, Balmes J, Miller RF, Walzer PD, Huang L; International HIV-associated Opportunistic Pneumonias Study.

PLoS One. 2013 Nov 13;8(11):e80795. doi: 10.1371/journal.pone.0080795. eCollection 2013.


Antibody responses against Pneumocystis jirovecii in health care workers over time.

Fong S, Daly KR, Tipirneni R, Jarlsberg LG, Djawe K, Koch JV, Swartzman A, Roth B, Walzer PD, Huang L.

Emerg Infect Dis. 2013 Oct;19(10):1612-9. doi: 10.3201/eid1910.121836.


High resolution synchrotron imaging of wheat root hairs growing in soil and image based modelling of phosphate uptake.

Keyes SD, Daly KR, Gostling NJ, Jones DL, Talboys P, Pinzer BR, Boardman R, Sinclair I, Marchant A, Roose T.

New Phytol. 2013 Jun;198(4):1023-9. doi: 10.1111/nph.12294. Epub 2013 Apr 22.


Serologic responses to recombinant Pneumocystis jirovecii major surface glycoprotein among Ugandan patients with respiratory symptoms.

Blount RJ, Jarlsberg LG, Daly KR, Worodria W, Davis JL, Cattamanchi A, Djawe K, Andama A, Koch J, Walzer PD, Huang L; International HIV-Associated Opportunistic Pneumonias (IHOP) Study.

PLoS One. 2012;7(12):e51545. doi: 10.1371/journal.pone.0051545. Epub 2012 Dec 21.


Photorefractive control of surface plasmon polaritons in a hybrid liquid crystal cell.

Abbott SB, Daly KR, D'Alessandro G, Kaczmarek M, Smith DC.

Opt Lett. 2012 Jul 1;37(13):2436-8. doi: 10.1364/OL.37.002436.


Serologic responses to pneumocystis proteins in HIV patients with and without Pneumocystis jirovecii pneumonia.

Gingo MR, Lucht L, Daly KR, Djawe K, Palella FJ, Abraham AG, Bream JH, Witt MD, Kingsley LA, Norris KA, Walzer PD, Morris A.

J Acquir Immune Defic Syndr. 2011 Jul 1;57(3):190-6. doi: 10.1097/QAI.0b013e3182167516.


Decreased serum antibody responses to recombinant pneumocystis antigens in HIV-infected and uninfected current smokers.

Crothers K, Daly KR, Rimland D, Goetz MB, Gibert CL, Butt AA, Justice AC, Djawe K, Levin L, Walzer PD.

Clin Vaccine Immunol. 2011 Mar;18(3):380-6. doi: 10.1128/CVI.00421-10. Epub 2010 Dec 29.


Serum antibody levels to the Pneumocystis jirovecii major surface glycoprotein in the diagnosis of P. jirovecii pneumonia in HIV+ patients.

Djawe K, Huang L, Daly KR, Levin L, Koch J, Schwartzman A, Fong S, Roth B, Subramanian A, Grieco K, Jarlsberg L, Walzer PD.

PLoS One. 2010 Dec 9;5(12):e14259. doi: 10.1371/journal.pone.0014259.


Seroepidemiological study of Pneumocystis jirovecii infection in healthy infants in Chile using recombinant fragments of the P. jirovecii major surface glycoprotein.

Djawe K, Daly KR, Vargas SL, Santolaya ME, Ponce CA, Bustamante R, Koch J, Levin L, Walzer PD.

Int J Infect Dis. 2010 Dec;14(12):e1060-6. doi: 10.1016/j.ijid.2010.07.003.


Healthcare worker occupation and immune response to Pneumocystis jirovecii.

Tipirneni R, Daly KR, Jarlsberg LG, Koch JV, Swartzman A, Roth BM, Walzer PD, Huang L.

Emerg Infect Dis. 2009 Oct;15(10):1590-7. doi: 10.3201/eid1510.090207.


Evidence for high prevalence of Pneumocystis jirovecii exposure among Cameroonians.

Nkinin SW, Daly KR, Walzer PD, Ndzi ES, Asonganyi T, Respaldiza N, Medrano FJ, Kaneshiro ES.

Acta Trop. 2009 Nov;112(2):219-24. doi: 10.1016/j.actatropica.2009.07.030. Epub 2009 Aug 7.


Long-term serologic responses to the Pneumocystis jirovecii major surface glycoprotein in HIV-positive individuals with and without P. jirovecii infection.

Walzer PD, Djawe K, Levin L, Daly KR, Koch J, Kingsley L, Witt M, Golub ET, Bream JH, Taiwo B, Morris A.

J Infect Dis. 2009 May 1;199(9):1335-44. doi: 10.1086/597803.


Antibody response to Pneumocystis jirovecii major surface glycoprotein.

Daly KR, Huang L, Morris A, Koch J, Crothers K, Levin L, Eiser S, Satwah S, Zucchi P, Walzer PD.

Emerg Infect Dis. 2006 Aug;12(8):1231-7.


Enzyme-linked immunosorbent assay and serologic responses to Pneumocystis jiroveci.

Daly KR, Koch J, Levin L, Walzer PD.

Emerg Infect Dis. 2004 May;10(5):848-54.


New rat model of Pneumocystis pneumonia induced by anti-CD4(+) T-lymphocyte antibodies.

Thullen TD, Ashbaugh AD, Daly KR, Linke MJ, Steele PE, Walzer PD.

Infect Immun. 2003 Nov;71(11):6292-7.


Serologic responses to epitopes of the major surface glycoprotein of Pneumocystis jiroveci differ in human immunodeficiency virus-infected and uninfected persons.

Daly KR, Fichtenbaum CJ, Tanaka R, Linke MJ, O'Bert R, Thullen TD, Hui MS, Smulian AG, Walzer PD.

J Infect Dis. 2002 Sep 1;186(5):644-51. Epub 2002 Aug 9.


An intronic 10-base-pair deletion in a class II A beta gene affects RNA processing.

Ghogawala Z, Choi E, Daly KR, Blanco LR, Griffith IJ, Glimcher LH.

Mol Cell Biol. 1989 Oct;9(10):4402-8.


Statistical association of dietary components with Simonsiella species residing in normal human mouths.

Gregory DA, Kuhn DA, Daly KR, Flygenring K.

Appl Environ Microbiol. 1985 Sep;50(3):704-5.


Isolation, characterization, and numerical taxonomy of Simonsiella strains from the oral cavities of cats, dogs, sheep, and humans.

Kuhn DA, Gregory DA, Buchanan GE Jr, Nyby MD, Daly KR.

Arch Microbiol. 1978 Sep 1;118(3):235-41.


Fatty acid composition of Simonsiella strains.

Jenkins CL, Kuhn DA, Daly KR.

Arch Microbiol. 1977 Jun 20;113(3):209-13.


Effect of temperature on survival of gamma-irradiated seeds of Arabidopsis thaliana.

Daly KR.

Experientia. 1971 Jan 15;27(1):81-3. No abstract available.


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