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Items: 43

1.

A halotyrosine antibody that detects increased protein modifications in asthma patients.

Jin H, Hallstrand TS, Daly DS, Matzke MM, Nair P, Bigelow DJ, Pounds JG, Zangar RC.

J Immunol Methods. 2014 Jan 31;403(1-2):17-25. doi: 10.1016/j.jim.2013.11.013. Epub 2013 Dec 2.

2.

Oxidatively modified proteins as plasma biomarkers in breast cancer.

Jin H, Daly DS, Marks JR, Zangar RC.

Cancer Biomark. 2013;13(3):193-200. doi: 10.3233/CBM-130349.

3.

Plasma biomarker profiles differ depending on breast cancer subtype but RANTES is consistently increased.

Gonzalez RM, Daly DS, Tan R, Marks JR, Zangar RC.

Cancer Epidemiol Biomarkers Prev. 2011 Jul;20(7):1543-51. doi: 10.1158/1055-9965.EPI-10-1248. Epub 2011 May 17.

4.

Analysis of high-throughput ELISA microarray data.

White AM, Daly DS, Zangar RC.

Methods Mol Biol. 2011;694:191-211. doi: 10.1007/978-1-60761-977-2_13.

PMID:
21082436
5.

An internal calibration method for protein-array studies.

Daly DS, Anderson KK, Seurynck-Servoss SL, Gonzalez RM, White AM, Zangar RC.

Stat Appl Genet Mol Biol. 2010;9:Article 14. doi: 10.2202/1544-6115.1506. Epub 2010 Jan 27.

PMID:
20196749
6.

An analysis pipeline for the inference of protein-protein interaction networks.

Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.

Int J Data Min Bioinform. 2009;3(4):409-30.

PMID:
20052905
7.

ProMAT calibrator: A tool for reducing experimental bias in antibody microarrays.

Zangar RC, Daly DS, White AM, Servoss SL, Tan RM, Collett JR.

J Proteome Res. 2009 Aug;8(8):3937-43. doi: 10.1021/pr900247n.

PMID:
19618941
8.

ELISA-BASE: an integrated bioinformatics tool for analyzing and tracking ELISA microarray data.

White AM, Collett JR, Seurynck-Servoss SL, Daly DS, Zangar RC.

Bioinformatics. 2009 Jun 15;25(12):1566-7. doi: 10.1093/bioinformatics/btp182. Epub 2009 Apr 3.

9.

Platelet proteome changes associated with diabetes and during platelet storage for transfusion.

Springer DL, Miller JH, Spinelli SL, Pasa-Tolic L, Purvine SO, Daly DS, Zangar RC, Jin S, Blumberg N, Francis CW, Taubman MB, Casey AE, Wittlin SD, Phipps RP.

J Proteome Res. 2009 May;8(5):2261-72. doi: 10.1021/pr800885j.

10.

Predicting protein concentrations with ELISA microarray assays, monotonic splines and Monte Carlo simulation.

Daly DS, Anderson KK, White AM, Gonzalez RM, Varnum SM, Zangar RC.

Stat Appl Genet Mol Biol. 2008;7(1):Article21. doi: 10.2202/1544-6115.1364. Epub 2008 Jul 14.

PMID:
18673290
11.

A general system for studying protein-protein interactions in Gram-negative bacteria.

Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ 4th, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, Auberry DL, Wang Y, Larimer FW, Kennel SJ, Doktycz MJ, Morrell-Falvey JL, Owens ET, Buchanan MV.

J Proteome Res. 2008 Aug;7(8):3319-28. doi: 10.1021/pr8001832. Epub 2008 Jul 1.

PMID:
18590317
12.

A Bayesian estimator of protein-protein association probabilities.

Gilmore JM, Auberry DL, Sharp JL, White AM, Anderson KK, Daly DS.

Bioinformatics. 2008 Jul 1;24(13):1554-5. doi: 10.1093/bioinformatics/btn238. Epub 2008 May 22.

PMID:
18499697
13.

MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.

Monroe ME, Shaw JL, Daly DS, Adkins JN, Smith RD.

Comput Biol Chem. 2008 Jun;32(3):215-7. doi: 10.1016/j.compbiolchem.2008.02.006. Epub 2008 Feb 26.

14.

Mixed-effects statistical model for comparative LC-MS proteomics studies.

Daly DS, Anderson KK, Panisko EA, Purvine SO, Fang R, Monroe ME, Baker SE.

J Proteome Res. 2008 Mar;7(3):1209-17. doi: 10.1021/pr070441i. Epub 2008 Feb 6.

PMID:
18251496
15.

The effects of shared peptides on protein quantitation in label-free proteomics by LC/MS/MS.

Jin S, Daly DS, Springer DL, Miller JH.

J Proteome Res. 2008 Jan;7(1):164-9. Epub 2007 Nov 15.

PMID:
18001079
16.

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

Sharp JL, Anderson KK, Hurst GB, Daly DS, Pelletier DA, Cannon WR, Auberry DL, Schmoyer DD, McDonald WH, White AM, Hooker BS, Victry KD, Buchanan MV, Kery V, Wiley HS.

J Proteome Res. 2007 Sep;6(9):3788-95. Epub 2007 Aug 11.

PMID:
17691832
17.

An estimate of biofilm properties using an acoustic microscope.

Good MS, Wend CF, Bond LJ, Mclean JS, Panetta PD, Ahmed S, Crawford SL, Daly DS.

IEEE Trans Ultrason Ferroelectr Freq Control. 2006 Sep;53(9):1637-48.

PMID:
16964914
18.

Comparing bacterial DNA microarray fingerprints.

Willse A, Chandler DP, White A, Protic M, Daly DS, Wunschel S.

Stat Appl Genet Mol Biol. 2005;4:Article19. Epub 2005 Aug 15.

PMID:
16646836
19.

ProMAT: protein microarray analysis tool.

White AM, Daly DS, Varnum SM, Anderson KK, Bollinger N, Zangar RC.

Bioinformatics. 2006 May 15;22(10):1278-9. Epub 2006 Apr 4.

PMID:
16595561
20.
21.

ELISA microarray technology as a high-throughput system for cancer biomarker validation.

Zangar RC, Daly DS, White AM.

Expert Rev Proteomics. 2006 Feb;3(1):37-44. Review.

PMID:
16445349
22.

Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates.

Chandler DP, Alferov O, Chernov B, Daly DS, Golova J, Perov A, Protic M, Robison R, Schipma M, White A, Willse A.

J Clin Microbiol. 2006 Jan;44(1):244-50.

23.

Automated Microarray Image Analysis Toolbox for MATLAB.

White AM, Daly DS, Willse AR, Protic M, Chandler DP.

Bioinformatics. 2005 Sep 1;21(17):3578-9. Epub 2005 Jul 26.

PMID:
16046497
24.

The utility of accurate mass and LC elution time information in the analysis of complex proteomes.

Norbeck AD, Monroe ME, Adkins JN, Anderson KK, Daly DS, Smith RD.

J Am Soc Mass Spectrom. 2005 Aug;16(8):1239-49.

25.

Evaluating concentration estimation errors in ELISA microarray experiments.

Daly DS, White AM, Varnum SM, Anderson KK, Zangar RC.

BMC Bioinformatics. 2005 Jan 26;6:17.

26.

Quantitative oligonucleotide microarray fingerprinting of Salmonella enterica isolates.

Willse A, Straub TM, Wunschel SC, Small JA, Call DR, Daly DS, Chandler DP.

Nucleic Acids Res. 2004 Mar 22;32(5):1848-56. Print 2004.

27.

Sequence versus structure for the direct detection of 16S rRNA on planar oligonucleotide microarrays.

Chandler DP, Newton GJ, Small JA, Daly DS.

Appl Environ Microbiol. 2003 May;69(5):2950-8.

28.

Fingerprinting closely related xanthomonas pathovars with random nonamer oligonucleotide microarrays.

Kingsley MT, Straub TM, Call DR, Daly DS, Wunschel SC, Chandler DP.

Appl Environ Microbiol. 2002 Dec;68(12):6361-70.

29.

Genotyping Cryptosporidium parvum with an hsp70 single-nucleotide polymorphism microarray.

Straub TM, Daly DS, Wunshel S, Rochelle PA, DeLeon R, Chandler DP.

Appl Environ Microbiol. 2002 Apr;68(4):1817-26.

30.

An integrated confocal and magnetic resonance microscope for cellular research.

Wind RA, Minard KR, Holtom GR, Majors PD, Ackerman EJ, Colson SD, Cory DG, Daly DS, Ellis PD, Metting NF, Parkinson CI, Price JM, Tang XW.

J Magn Reson. 2000 Dec;147(2):371-7. Erratum in: J Magn Reson 2001 Aug;151(2):347.

PMID:
11097828
31.

Extracting and visualizing matrix-assisted laser desorption/ionization time-of-flight mass spectral fingerprints.

Jarman KH, Daly DS, Petersen CE, Saenz AJ, Valentine NB, Wahl KL.

Rapid Commun Mass Spectrom. 1999;13(15):1586-94.

PMID:
10421901
32.

Sedation for upper gastrointestinal endoscopy: a comparison of alfentanil-midazolam and meperidine-diazepam.

Donnelly MB, Scott WA, Daly DS.

Can J Anaesth. 1994 Dec;41(12):1161-5.

PMID:
7867109
33.

A comparison of sedation for upper GI endoscopy using diazepam with demerol or midazolam with alfentanil.

Donelly M, Scott WA, Daly DS.

Can J Anaesth. 1990 May;37(4 Pt 2):S21. No abstract available.

PMID:
2193745
34.

Scalloped valvulae conniventes: an endoscopic marker of celiac sprue.

Jabbari M, Wild G, Goresky CA, Daly DS, Lough JO, Cleland DP, Kinnear DG.

Gastroenterology. 1988 Dec;95(6):1518-22.

PMID:
3181676
35.

A new device for measuring fluctuations in plant stem diameter: Implications for monitoring plant responses : Note.

Beedlow PA, Daly DS, Thiede ME.

Environ Monit Assess. 1986 May;6(3):277-82. doi: 10.1007/BF00396795.

PMID:
24254737
36.

Colonoscopic features of cecal amebomas.

Luterman L, Alsumait AR, Daly DS, Goresky CA.

Gastrointest Endosc. 1985 Jun;31(3):204-6. No abstract available.

PMID:
4007440
37.

Gastric antral vascular ectasia: the watermelon stomach.

Jabbari M, Cherry R, Lough JO, Daly DS, Kinnear DG, Goresky CA.

Gastroenterology. 1984 Nov;87(5):1165-70.

PMID:
6332757
38.

Mallory-Weiss tear. A complication of cancer chemotherapy.

Fishman ML, Thirlwell MP, Daly DS.

Cancer. 1983 Dec 1;52(11):2031-2.

PMID:
6684987
39.

Metronidazole: an alternate therapy for antibiotic-associated colitis.

Cherry RD, Portnoy D, Jabbari M, Daly DS, Kinnear DG, Goresky CA.

Gastroenterology. 1982 May;82(5 Pt 1):849-51.

PMID:
7060906
40.

Uptake of labeled palmitate by the intact liver: role of intracellular binding sites.

Goresky CA, Daly DS, Mishkin S, Arias IM.

Am J Physiol. 1978 Jun;234(6):E542-53.

PMID:
665758
41.

The surgical case cart system--does it belong in your hospital?

Schutta AM, Daly DS.

Hosp Top. 1978 Jan-Feb;56(1):10-6. No abstract available.

PMID:
649139
42.

A fibreendoscopic study of acute upper gastrointestinal hemorrhage in Nairobi, Kenya.

Hansen DP, Daly DS.

Am J Trop Med Hyg. 1978 Jan;27(1 Pt 1):197-200.

PMID:
305205
43.

Intramural esophageal bleeding in a hemodialysis patient.

Lien JW, Dufresne LR, Daly DS.

Can Med Assoc J. 1974 Dec 7;111(11):1230-1.

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