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Items: 1 to 50 of 128

1.

Control of seminal fluid protein expression via regulatory hubs in Drosophila melanogaster.

Mohorianu I, Fowler EK, Dalmay T, Chapman T.

Proc Biol Sci. 2018 Sep 26;285(1887). pii: 20181681. doi: 10.1098/rspb.2018.1681.

2.

PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules.

Thody J, Folkes L, Medina-Calzada Z, Xu P, Dalmay T, Moulton V.

Nucleic Acids Res. 2018 Sep 28;46(17):8730-8739. doi: 10.1093/nar/gky609.

3.

Ambient temperature regulates the expression of a small set of sRNAs influencing plant development through NF-YA2 and YUC2.

Gyula P, Baksa I, Tóth T, Mohorianu I, Dalmay T, Szittya G.

Plant Cell Environ. 2018 Oct;41(10):2404-2417. doi: 10.1111/pce.13355. Epub 2018 Jul 26.

PMID:
29856891
4.

The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs.

Stocks MB, Mohorianu I, Beckers M, Paicu C, Moxon S, Thody J, Dalmay T, Moulton V.

Bioinformatics. 2018 Oct 1;34(19):3382-3384. doi: 10.1093/bioinformatics/bty338.

5.

High sensitivity and label-free oligonucleotides detection using photonic bandgap sensing structures biofunctionalized with molecular beacon probes.

Ruiz-Tórtola Á, Prats-Quílez F, González-Lucas D, Bañuls MJ, Maquieira Á, Wheeler G, Dalmay T, Griol A, Hurtado J, García-Rupérez J.

Biomed Opt Express. 2018 Mar 14;9(4):1717-1727. doi: 10.1364/BOE.9.001717. eCollection 2018 Apr 1.

6.

Experimental study of the evanescent-wave photonic sensors response in presence of molecular beacon conformational changes.

Ruiz-Tórtola Á, Prats-Quílez F, González-Lucas D, Bañuls MJ, Maquieira Á, Wheeler G, Dalmay T, Griol A, Hurtado J, Bohlmann H, Götzen R, García-Rupérez J.

J Biophotonics. 2018 Oct;11(10):e201800030. doi: 10.1002/jbio.201800030. Epub 2018 Jun 28.

PMID:
29664230
7.

Small RNA populations revealed by blocking rRNA fragments in Drosophila melanogaster reproductive tissues.

Fowler EK, Mohorianu I, Smith DT, Dalmay T, Chapman T.

PLoS One. 2018 Feb 23;13(2):e0191966. doi: 10.1371/journal.pone.0191966. eCollection 2018.

8.

microRNAs associated with early neural crest development in Xenopus laevis.

Ward NJ, Green D, Higgins J, Dalmay T, Münsterberg A, Moxon S, Wheeler GN.

BMC Genomics. 2018 Jan 18;19(1):59. doi: 10.1186/s12864-018-4436-0.

9.

Implementing the sterile insect technique with RNA interference - a review.

Darrington M, Dalmay T, Morrison NI, Chapman T.

Entomol Exp Appl. 2017 Sep;164(3):155-175. doi: 10.1111/eea.12575. Epub 2017 Jun 23.

10.

Evolution of flower color pattern through selection on regulatory small RNAs.

Bradley D, Xu P, Mohorianu II, Whibley A, Field D, Tavares H, Couchman M, Copsey L, Carpenter R, Li M, Li Q, Xue Y, Dalmay T, Coen E.

Science. 2017 Nov 17;358(6365):925-928. doi: 10.1126/science.aao3526.

PMID:
29146812
11.

MicroRNA expression in a phosphaturic mesenchymal tumour.

Green D, Mohorianu I, Piec I, Turner J, Beadsmoore C, Toms A, Ball R, Nolan J, McNamara I, Dalmay T, Fraser WD.

Bone Rep. 2017 Sep 6;7:63-69. doi: 10.1016/j.bonr.2017.09.001. eCollection 2017 Dec.

12.

Comparison of alternative approaches for analysing multi-level RNA-seq data.

Mohorianu I, Bretman A, Smith DT, Fowler EK, Dalmay T, Chapman T.

PLoS One. 2017 Aug 8;12(8):e0182694. doi: 10.1371/journal.pone.0182694. eCollection 2017.

13.

Profile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses.

Özkan S, Mohorianu I, Xu P, Dalmay T, Coutts RHA.

BMC Genomics. 2017 May 30;18(1):416. doi: 10.1186/s12864-017-3773-8.

14.

Genomic responses to the socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals.

Mohorianu I, Bretman A, Smith DT, Fowler EK, Dalmay T, Chapman T.

RNA. 2017 Jul;23(7):1048-1059. doi: 10.1261/rna.059246.116. Epub 2017 Apr 20.

15.

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets.

Paicu C, Mohorianu I, Stocks M, Xu P, Coince A, Billmeier M, Dalmay T, Moulton V, Moxon S.

Bioinformatics. 2017 Aug 15;33(16):2446-2454. doi: 10.1093/bioinformatics/btx210.

16.

miR-16 is highly expressed in Paget's associated osteosarcoma.

Green D, Mohorianu I, McNamara I, Dalmay T, Fraser WD.

Endocr Relat Cancer. 2017 May;24(5):L27-L31. doi: 10.1530/ERC-16-0487. No abstract available.

PMID:
28377382
17.

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.

Mathers TC, Chen Y, Kaithakottil G, Legeai F, Mugford ST, Baa-Puyoulet P, Bretaudeau A, Clavijo B, Colella S, Collin O, Dalmay T, Derrien T, Feng H, Gabaldón T, Jordan A, Julca I, Kettles GJ, Kowitwanich K, Lavenier D, Lenzi P, Lopez-Gomollon S, Loska D, Mapleson D, Maumus F, Moxon S, Price DR, Sugio A, van Munster M, Uzest M, Waite D, Jander G, Tagu D, Wilson AC, van Oosterhout C, Swarbreck D, Hogenhout SA.

Genome Biol. 2017 Apr 4;18(1):63. doi: 10.1186/s13059-017-1202-6. No abstract available.

18.

MicroRNAs Associated with Caste Determination and Differentiation in a Primitively Eusocial Insect.

Collins DH, Mohorianu I, Beckers M, Moulton V, Dalmay T, Bourke AF.

Sci Rep. 2017 Mar 31;7:45674. doi: 10.1038/srep45674.

19.

Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench.

Beckers M, Mohorianu I, Stocks M, Applegate C, Dalmay T, Moulton V.

RNA. 2017 Jun;23(6):823-835. doi: 10.1261/rna.059360.116. Epub 2017 Mar 13.

20.

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.

Mathers TC, Chen Y, Kaithakottil G, Legeai F, Mugford ST, Baa-Puyoulet P, Bretaudeau A, Clavijo B, Colella S, Collin O, Dalmay T, Derrien T, Feng H, Gabaldón T, Jordan A, Julca I, Kettles GJ, Kowitwanich K, Lavenier D, Lenzi P, Lopez-Gomollon S, Loska D, Mapleson D, Maumus F, Moxon S, Price DR, Sugio A, van Munster M, Uzest M, Waite D, Jander G, Tagu D, Wilson AC, van Oosterhout C, Swarbreck D, Hogenhout SA.

Genome Biol. 2017 Feb 13;18(1):27. doi: 10.1186/s13059-016-1145-3. Erratum in: Genome Biol. 2017 Apr 4;18(1):63.

21.

Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant.

Omidvar V, Mohorianu I, Dalmay T, Zheng Y, Fei Z, Pucci A, Mazzucato A, Večeřová V, Sedlářova M, Fellner M.

PLoS One. 2017 Feb 8;12(2):e0170715. doi: 10.1371/journal.pone.0170715. eCollection 2017.

22.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Katneni VK, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Dec 9;12(12):e1006500. doi: 10.1371/journal.pgen.1006500. eCollection 2016 Dec.

23.

Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae.

Illana A, Marconi M, Rodríguez-Romero J, Xu P, Dalmay T, Wilkinson MD, Ayllón MÁ, Sesma A.

Arch Virol. 2017 Mar;162(3):891-895. doi: 10.1007/s00705-016-3144-9. Epub 2016 Nov 17.

PMID:
27858291
24.

Transfer RNA-derived small RNAs in the cancer transcriptome.

Green D, Fraser WD, Dalmay T.

Pflugers Arch. 2016 Jun;468(6):1041-7. doi: 10.1007/s00424-016-1822-9. Epub 2016 Apr 20. Review.

25.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Apr 15;12(4):e1005954. doi: 10.1371/journal.pgen.1005954. eCollection 2016 Apr. Erratum in: PLoS Genet. 2016 Dec 9;12 (12 ):e1006500.

26.

The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration.

Hall AE, Lu WT, Godfrey JD, Antonov AV, Paicu C, Moxon S, Dalmay T, Wilczynska A, Muller PA, Bushell M.

Cell Death Dis. 2016 Apr 7;7:e2184. doi: 10.1038/cddis.2016.91.

27.

High-throughput-sequencing-based identification of a grapevine fanleaf virus satellite RNA in Vitis vinifera.

Chiumenti M, Mohorianu I, Roseti V, Saldarelli P, Dalmay T, Minafra A.

Arch Virol. 2016 May;161(5):1401-3. doi: 10.1007/s00705-016-2776-0. Epub 2016 Feb 12.

PMID:
26873812
28.

The microRNA-29 family in cartilage homeostasis and osteoarthritis.

Le LT, Swingler TE, Crowe N, Vincent TL, Barter MJ, Donell ST, Delany AM, Dalmay T, Young DA, Clark IM.

J Mol Med (Berl). 2016 May;94(5):583-96. doi: 10.1007/s00109-015-1374-z. Epub 2015 Dec 19.

29.

Identification of miRNAs with potential roles in regulation of anther development and male-sterility in 7B-1 male-sterile tomato mutant.

Omidvar V, Mohorianu I, Dalmay T, Fellner M.

BMC Genomics. 2015 Oct 28;16:878. doi: 10.1186/s12864-015-2077-0.

30.

A Database of microRNA Expression Patterns in Xenopus laevis.

Ahmed A, Ward NJ, Moxon S, Lopez-Gomollon S, Viaut C, Tomlinson ML, Patrushev I, Gilchrist MJ, Dalmay T, Dotlic D, Münsterberg AE, Wheeler GN.

PLoS One. 2015 Oct 27;10(10):e0138313. doi: 10.1371/journal.pone.0138313. eCollection 2015.

31.

Detecting new microRNAs in human osteoarthritic chondrocytes identifies miR-3085 as a human, chondrocyte-selective, microRNA.

Crowe N, Swingler TE, Le LT, Barter MJ, Wheeler G, Pais H, Donell ST, Young DA, Dalmay T, Clark IM.

Osteoarthritis Cartilage. 2016 Mar;24(3):534-43. doi: 10.1016/j.joca.2015.10.002. Epub 2015 Oct 20.

32.

Microguards and micromessengers of the genome.

Green D, Dalmay T, Chapman T.

Heredity (Edinb). 2016 Feb;116(2):125-34. doi: 10.1038/hdy.2015.84. Epub 2015 Sep 30. Review.

33.

Role of miR-140 in embryonic bone development and cancer.

Green D, Dalmay T, Fraser WD.

Clin Sci (Lond). 2015 Nov;129(10):863-73. doi: 10.1042/CS20150230. Review.

PMID:
26318829
34.

The genomes of two key bumblebee species with primitive eusocial organization.

Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Câmara F, Guigó R, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Bitondi MM, Blaxter ML, Bourke AF, Brown MJ, Buechel SD, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, du Plessis L, Duncan E, Erler S, Evans J, Falcon T, Flores K, Freitas FC, Fuchikawa T, Gempe T, Hartfelder K, Hauser F, Helbing S, Humann FC, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Köhler A, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Antonio DS, Marxer M, Meeus I, Moritz RF, Nair A, Näpflin K, Nissen I, Niu J, Nunes FM, Oakeshott JG, Osborne A, Otte M, Pinheiro DG, Rossié N, Rueppell O, Santos CG, Schmid-Hempel R, Schmitt BD, Schulte C, Simões ZL, Soares MP, Swevers L, Winnebeck EC, Wolschin F, Yu N, Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Schmid-Hempel P, Worley KC.

Genome Biol. 2015 Apr 24;16:76. doi: 10.1186/s13059-015-0623-3.

35.

A non-canonical RNA silencing pathway promotes mRNA degradation in basal Fungi.

Trieu TA, Calo S, Nicolás FE, Vila A, Moxon S, Dalmay T, Torres-Martínez S, Garre V, Ruiz-Vázquez RM.

PLoS Genet. 2015 Apr 13;11(4):e1005168. doi: 10.1371/journal.pgen.1005168. eCollection 2015 Apr.

36.

MicroRNAs influence reproductive responses by females to male sex peptide in Drosophila melanogaster.

Fricke C, Green D, Smith D, Dalmay T, Chapman T.

Genetics. 2014 Dec;198(4):1603-19. doi: 10.1534/genetics.114.167320. Epub 2014 Sep 22.

37.

Global discovery and characterization of small non-coding RNAs in marine microalgae.

Lopez-Gomollon S, Beckers M, Rathjen T, Moxon S, Maumus F, Mohorianu I, Moulton V, Dalmay T, Mock T.

BMC Genomics. 2014 Aug 20;15:697. doi: 10.1186/1471-2164-15-697.

38.

miR-338-3p is over-expressed in blood, CFS, serum and spinal cord from sporadic amyotrophic lateral sclerosis patients.

De Felice B, Annunziata A, Fiorentino G, Borra M, Biffali E, Coppola C, Cotrufo R, Brettschneider J, Giordana ML, Dalmay T, Wheeler G, D'Alessandro R.

Neurogenetics. 2014 Oct;15(4):243-53. doi: 10.1007/s10048-014-0420-2. Epub 2014 Aug 19.

PMID:
25130371
39.

Small RNA profile in moso bamboo root and leaf obtained by high definition adapters.

Xu P, Mohorianu I, Yang L, Zhao H, Gao Z, Dalmay T.

PLoS One. 2014 Jul 31;9(7):e103590. doi: 10.1371/journal.pone.0103590. eCollection 2014.

40.

Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex.

Jefferson M, Donaszi-Ivanov A, Pollen S, Dalmay T, Saalbach G, Powell PP.

J Virol. 2014 Sep;88(18):10340-53. doi: 10.1128/JVI.00984-14. Epub 2014 Jun 25.

41.

Small RNA analysis in Sindbis virus infected human HEK293 cells.

Donaszi-Ivanov A, Mohorianu I, Dalmay T, Powell PP.

PLoS One. 2013 Dec 31;8(12):e84070. doi: 10.1371/journal.pone.0084070. eCollection 2013.

42.

A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides.

Cervantes M, Vila A, Nicolás FE, Moxon S, de Haro JP, Dalmay T, Torres-Martínez S, Ruiz-Vázquez RM.

PLoS One. 2013 Jul 23;8(7):e69283. doi: 10.1371/journal.pone.0069283. Print 2013.

43.

Discovery of novel small RNAs in the quest to unravel genome complexity.

Hall AE, Dalmay T.

Biochem Soc Trans. 2013 Aug;41(4):866-70. doi: 10.1042/BST20120347.

PMID:
23863146
44.

CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data.

Mohorianu I, Stocks MB, Wood J, Dalmay T, Moulton V.

RNA Biol. 2013 Jul;10(7):1221-30. doi: 10.4161/rna.25538. Epub 2013 Jun 28.

45.

Mechanism of miRNA-mediated repression of mRNA translation.

Dalmay T.

Essays Biochem. 2013;54:29-38. doi: 10.1042/bse0540029. Review.

PMID:
23829525
46.

Y RNAs: recent developments.

Hall AE, Turnbull C, Dalmay T.

Biomol Concepts. 2013 Apr;4(2):103-10. doi: 10.1515/bmc-2012-0050. Review.

PMID:
25436569
47.

New evidence supports the notion that microRNA-140 may play a role in the early stages of bone development.

Nicolas FE, Dalmay T.

Arthritis Rheum. 2013 Jun;65(6):1668-9. doi: 10.1002/art.37941. No abstract available.

48.

MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome.

Mapleson D, Moxon S, Dalmay T, Moulton V.

J Exp Zool B Mol Dev Evol. 2013 Jan;320(1):47-56. doi: 10.1002/jez.b.22483. Epub 2012 Nov 26.

PMID:
23184675
49.

Everybody wins! Poland hosts thrilling competitions of viruses, RNAi and football teams.

Grimm D, Dalmay T, van Rij RP.

EMBO Rep. 2012 Oct;13(10):874-6. doi: 10.1038/embor.2012.136. Epub 2012 Sep 18.

50.

Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions.

Lopez-Gomollon S, Mohorianu I, Szittya G, Moulton V, Dalmay T.

Planta. 2012 Dec;236(6):1875-87. doi: 10.1007/s00425-012-1734-7. Epub 2012 Aug 26.

PMID:
22922939

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