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Items: 1 to 50 of 77

1.

Phage Predation Shapes the Population Structure of Shiga-Toxigenic Escherichia coli O157:H7 in the UK: An Evolutionary Perspective.

Cowley LA, Dallman TJ, Jenkins C, Sheppard SK.

Front Genet. 2019 Aug 30;10:763. doi: 10.3389/fgene.2019.00763. eCollection 2019.

2.

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers.

Ingle DJ, Nair S, Hartman H, Ashton PM, Dyson ZA, Day M, Freedman J, Chattaway MA, Holt KE, Dallman TJ.

PLoS Negl Trop Dis. 2019 Sep 12;13(9):e0007620. doi: 10.1371/journal.pntd.0007620. eCollection 2019 Sep.

3.

Salmonellosis outbreak with novel Salmonella enterica subspecies enterica serotype (11:z41:e,n,z15) attributable to sesame products in five European countries, 2016 to 2017.

Meinen A, Simon S, Banerji S, Szabo I, Malorny B, Borowiak M, Hadziabdic S, Becker N, Luber P, Lohr D, Harms C, Plenge-Bönig A, Mellou K, Mandilara G, Mossong J, Ragimbeau C, Weicherding P, Hau P, Dědičová D, Šafaříková L, Nair S, Dallman TJ, Larkin L, McCormick J, De Pinna E, Severi E, Kotila S, Niskanen T, Rizzi V, Deserio D, Flieger A, Stark K.

Euro Surveill. 2019 Sep;24(36). doi: 10.2807/1560-7917.ES.2019.24.36.1800543.

4.
5.

Emergence of phylogenetically diverse and fluoroquinolone resistant Salmonella Enteritidis as a cause of invasive nontyphoidal Salmonella disease in Ghana.

Aldrich C, Hartman H, Feasey N, Chattaway MA, Dekker D, Al-Emran HM, Larkin L, McCormick J, Sarpong N, Le Hello S, Adu-Sarkodie Y, Panzner U, Park SE, Im J, Marks F, May J, Dallman TJ, Eibach D.

PLoS Negl Trop Dis. 2019 Jun 20;13(6):e0007485. doi: 10.1371/journal.pntd.0007485. eCollection 2019 Jun.

6.

A sensitive method for the recovery of Escherichia coli serogroup O55 including Shiga toxin-producing variants for potential use in outbreaks.

Kirchner M, Sayers E, Cawthraw S, Duggett N, Gosling R, Jenkins C, Dallman TJ, Mueller-Doblies D, Anjum MF.

J Appl Microbiol. 2019 Sep;127(3):889-896. doi: 10.1111/jam.14345. Epub 2019 Jul 7.

PMID:
31183950
7.

SGI-4 in Monophasic Salmonella Typhimurium ST34 Is a Novel ICE That Enhances Resistance to Copper.

Branchu P, Charity OJ, Bawn M, Thilliez G, Dallman TJ, Petrovska L, Kingsley RA.

Front Microbiol. 2019 May 24;10:1118. doi: 10.3389/fmicb.2019.01118. eCollection 2019.

8.

Novel Salmonella Variant Associated with Mortality in Two Great Spotted Woodpeckers (Dendrocopos major).

Wilkinson V, Fernandez JR, Núñez A, Macgregor SK, John SK, Dallman TJ, Cunningham AA, de Pinna EM, Lawson B.

J Wildl Dis. 2019 Oct;55(4):874-878. Epub 2019 Jun 5.

PMID:
31166852
9.

An international outbreak of Salmonella enterica serotype Enteritidis linked to eggs from Poland: a microbiological and epidemiological study.

Pijnacker R, Dallman TJ, Tijsma ASL, Hawkins G, Larkin L, Kotila SM, Amore G, Amato E, Suzuki PM, Denayer S, Klamer S, Pászti J, McCormick J, Hartman H, Hughes GJ, Brandal LCT, Brown D, Mossong J, Jernberg C, Müller L, Palm D, Severi E, Gołębiowska J, Hunjak B, Owczarek S, Le Hello S, Garvey P, Mooijman K, Friesema IHM, van der Weijden C, van der Voort M, Rizzi V, Franz E; International Outbreak Investigation Team.

Lancet Infect Dis. 2019 Jul;19(7):778-786. doi: 10.1016/S1473-3099(19)30047-7. Epub 2019 May 24.

PMID:
31133519
10.

Ceftriaxone-resistant Salmonella Typhi in a traveller returning from a mass gathering in Iraq.

Godbole G, McCann N, Jones SM, Dallman TJ, Brown M.

Lancet Infect Dis. 2019 May;19(5):467. doi: 10.1016/S1473-3099(19)30176-8. No abstract available.

PMID:
31034389
11.

Identification and typing of Yersinia enterocolitica and Yersinia pseudotuberculosis isolated from human clinical specimens in England between 2004 and 2018.

Hunter E, Greig DR, Schaefer U, Wright MJ, Dallman TJ, McNally A, Jenkins C.

J Med Microbiol. 2019 Apr;68(4):538-548. doi: 10.1099/jmm.0.000943. Epub 2019 Mar 19.

PMID:
30888316
12.

LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.

Painset A, Björkman JT, Kiil K, Guillier L, Mariet JF, Félix B, Amar C, Rotariu O, Roussel S, Perez-Reche F, Brisse S, Moura A, Lecuit M, Forbes K, Strachan N, Grant K, Møller-Nielsen E, Dallman TJ.

Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000257. Epub 2019 Feb 18.

13.

Utility of Whole Genome Sequencing To Describe the Persistence and Evolution of Listeria monocytogenes Strains within Crabmeat Processing Environments Linked to Two Outbreaks of Listeriosis.

Elson R, Awofisayo-Okuyelu A, Greener T, Swift C, Painset A, Amar CFL, Newton A, Aird H, Swindlehurst M, Elviss N, Foster K, Dallman TJ, Ruggles R, Grant K.

J Food Prot. 2019 Jan;82(1):30-38. doi: 10.4315/0362-028X.JFP-18-206.

PMID:
30702931
14.
15.

Highly Pathogenic Clone of Shiga Toxin-Producing Escherichia coli O157:H7, England and Wales.

Byrne L, Dallman TJ, Adams N, Mikhail AFW, McCarthy N, Jenkins C.

Emerg Infect Dis. 2018 Dec;24(12):2303-2308. doi: 10.3201/eid2412.180409.

16.

An outbreak of Shigella boydii serotype 20 in January 2015 amongst United Kingdom healthcare workers involved in the Ebola response in Sierra Leone.

Todkill D, Pudney R, Terrell A, Tuck J, Hutley E, Dallman TJ, Jenkins C, Manuel R, Wade M, Puleston R, Hawker J.

J Med Microbiol. 2018 Nov;67(11):1596-1600. doi: 10.1099/jmm.0.000832. Epub 2018 Sep 25.

PMID:
30251950
17.
18.

Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae.

Greig DR, Schaefer U, Octavia S, Hunter E, Chattaway MA, Dallman TJ, Jenkins C.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00831-18. doi: 10.1128/JCM.00831-18. Print 2018 Nov.

19.

An outbreak of Shiga Toxin-producing Escherichia coli O157:H7 associated with contaminated salad leaves: epidemiological, genomic and food trace back investigations - CORRIGENDUM.

Mikhail AFW, Jenkins C, Dallman TJ, Inns T, Douglas A, Martín AIC, Fox A, Cleary P, Elson R, Hawker J.

Epidemiol Infect. 2018 Oct;146(14):1879. doi: 10.1017/S0950268818002108. Epub 2018 Jul 26. No abstract available.

PMID:
30047349
20.

Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157.

Cowley LA, Low AS, Pickard D, Boinett CJ, Dallman TJ, Day M, Perry N, Gally DL, Parkhill J, Jenkins C, Cain AK.

MBio. 2018 Jul 24;9(4). pii: e00705-18. doi: 10.1128/mBio.00705-18.

21.

Operational burden of implementing Salmonella Enteritidis and Typhimurium cluster detection using whole genome sequencing surveillance data in England: a retrospective assessment.

Mook P, Gardiner D, Verlander NQ, McCormick J, Usdin M, Crook P, Jenkins C, Dallman TJ.

Epidemiol Infect. 2018 Aug;146(11):1452-1460. doi: 10.1017/S0950268818001589. Epub 2018 Jul 2.

PMID:
29961436
22.

Antimicrobial resistance profiles of Shigella dysenteriae isolated from travellers returning to the UK, 2004-2017.

Terry LM, Barker CR, Day MR, Greig DR, Dallman TJ, Jenkins C.

J Med Microbiol. 2018 Aug;67(8):1022-1030. doi: 10.1099/jmm.0.000779. Epub 2018 Jun 29.

PMID:
29957175
23.

Erratum: Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli.

Lupolova N, Dallman TJ, Holden NJ, Gally DL.

Microb Genom. 2018 Jun;4(6). doi: 10.1099/mgen.0.000193. Epub 2018 Jun 6. No abstract available.

24.

An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men.

Baker KS, Dallman TJ, Thomson NR, Jenkins C.

Microb Genom. 2018 Jul;4(7). doi: 10.1099/mgen.0.000181. Epub 2018 May 21.

25.

Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance.

Baker KS, Dallman TJ, Field N, Childs T, Mitchell H, Day M, Weill FX, Lefèvre S, Tourdjman M, Hughes G, Jenkins C, Thomson N.

Sci Rep. 2018 May 9;8(1):7389. doi: 10.1038/s41598-018-25764-3.

26.

Phylogenetic comparison of enteroinvasive Escherichia coli isolated from cases of diarrhoeal disease in England, 2005-2016.

Cowley LA, Oresegun DR, Chattaway MA, Dallman TJ, Jenkins C.

J Med Microbiol. 2018 Apr 25. doi: 10.1099/jmm.0.000739. [Epub ahead of print]

PMID:
29693541
27.

Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species.

Baker KS, Dallman TJ, Field N, Childs T, Mitchell H, Day M, Weill FX, Lefèvre S, Tourdjman M, Hughes G, Jenkins C, Thomson N.

Nat Commun. 2018 Apr 13;9(1):1462. doi: 10.1038/s41467-018-03949-8.

28.

Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal Salmonella enterica.

Neuert S, Nair S, Day MR, Doumith M, Ashton PM, Mellor KC, Jenkins C, Hopkins KL, Woodford N, de Pinna E, Godbole G, Dallman TJ.

Front Microbiol. 2018 Mar 27;9:592. doi: 10.3389/fmicb.2018.00592. eCollection 2018.

29.

Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel.

Rew V, Mook P, Trienekens S, Baker KS, Dallman TJ, Jenkins C, Crook PD, Thomson NR.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000170. Epub 2018 Mar 27.

30.

Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak.

Pearce ME, Alikhan NF, Dallman TJ, Zhou Z, Grant K, Maiden MCJ.

Int J Food Microbiol. 2018 Jun 2;274:1-11. doi: 10.1016/j.ijfoodmicro.2018.02.023. Epub 2018 Feb 28.

31.

Farm-to-fork investigation of an outbreak of Shiga toxin-producing Escherichia coli O157.

Wilson D, Dolan G, Aird H, Sorrell S, Dallman TJ, Jenkins C, Robertson L, Gorton R.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000160. Epub 2018 Feb 28.

32.

Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins.

Klemm EJ, Shakoor S, Page AJ, Qamar FN, Judge K, Saeed DK, Wong VK, Dallman TJ, Nair S, Baker S, Shaheen G, Qureshi S, Yousafzai MT, Saleem MK, Hasan Z, Dougan G, Hasan R.

MBio. 2018 Feb 20;9(1). pii: e00105-18. doi: 10.1128/mBio.00105-18.

33.

Epidemiological analysis of Salmonella clusters identified by whole genome sequencing, England and Wales 2014.

Waldram A, Dolan G, Ashton PM, Jenkins C, Dallman TJ.

Food Microbiol. 2018 May;71:39-45. doi: 10.1016/j.fm.2017.02.012. Epub 2017 Mar 16.

PMID:
29366467
34.

Whole genome sequencing reveals an outbreak of Salmonella Enteritidis associated with reptile feeder mice in the United Kingdom, 2012-2015.

Kanagarajah S, Waldram A, Dolan G, Jenkins C, Ashton PM, Carrion Martin AI, Davies R, Frost A, Dallman TJ, De Pinna EM, Hawker JI, Grant KA, Elson R.

Food Microbiol. 2018 May;71:32-38. doi: 10.1016/j.fm.2017.04.005. Epub 2017 Apr 18.

PMID:
29366466
35.

Validation of Whole-Genome Sequencing for Identification and Characterization of Shiga Toxin-Producing Escherichia coli To Produce Standardized Data To Enable Data Sharing.

Holmes A, Dallman TJ, Shabaan S, Hanson M, Allison L.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01388-17. doi: 10.1128/JCM.01388-17. Print 2018 Mar.

36.

An outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with contaminated salad leaves: epidemiological, genomic and food trace back investigations.

Mikhail AFW, Jenkins C, Dallman TJ, Inns T, Douglas A, Martín AIC, Fox A, Cleary P, Elson R, Hawker J.

Epidemiol Infect. 2018 Jan;146(2):187-196. doi: 10.1017/S0950268817002874. Epub 2017 Dec 17. Erratum in: Epidemiol Infect. 2018 Oct;146(14):1879.

PMID:
29248018
37.

Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Salmonella enterica serovars Typhi and Paratyphi.

Day MR, Doumith M, Do Nascimento V, Nair S, Ashton PM, Jenkins C, Dallman TJ, Stevens FJ, Freedman J, Hopkins KL, Woodford N, De Pinna EM, Godbole G.

J Antimicrob Chemother. 2018 Feb 1;73(2):365-372. doi: 10.1093/jac/dkx379.

PMID:
29216342
38.

Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli.

Lupolova N, Dallman TJ, Holden NJ, Gally DL.

Microb Genom. 2017 Oct 3;3(10):e000135. doi: 10.1099/mgen.0.000135. eCollection 2017 Oct. Erratum in: Microb Genom. 2018 Jun;4(6):.

39.

Evolutionary Context of Non-Sorbitol-Fermenting Shiga Toxin-Producing Escherichia coli O55:H7.

Schutz K, Cowley LA, Shaaban S, Carroll A, McNamara E, Gally DL, Godbole G, Jenkins C, Dallman TJ.

Emerg Infect Dis. 2017 Dec;23(12):1966-1973. doi: 10.3201/eid2312.170628.

40.

Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa.

Ashton PM, Owen SV, Kaindama L, Rowe WPM, Lane CR, Larkin L, Nair S, Jenkins C, de Pinna EM, Feasey NA, Hinton JCD, Dallman TJ.

Genome Med. 2017 Oct 31;9(1):92. doi: 10.1186/s13073-017-0480-7.

41.

Whole-Genome Sequencing for National Surveillance of Shigella flexneri.

Chattaway MA, Greig DR, Gentle A, Hartman HB, Dallman TJ, Jenkins C.

Front Microbiol. 2017 Sep 19;8:1700. doi: 10.3389/fmicb.2017.01700. eCollection 2017.

42.

Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Shigella sonnei isolated from cases of diarrhoeal disease in England and Wales, 2015.

Sadouki Z, Day MR, Doumith M, Chattaway MA, Dallman TJ, Hopkins KL, Elson R, Woodford N, Godbole G, Jenkins C.

J Antimicrob Chemother. 2017 Sep 1;72(9):2496-2502. doi: 10.1093/jac/dkx170.

PMID:
28591819
43.

Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings.

Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR.

Nat Genet. 2017 Mar 30;49(4):651. doi: 10.1038/ng0417-651c. No abstract available.

PMID:
28358127
44.

Short-term evolution of Shiga toxin-producing Escherichia coli O157:H7 between two food-borne outbreaks.

Cowley LA, Dallman TJ, Fitzgerald S, Irvine N, Rooney PJ, McAteer SP, Day M, Perry NT, Bono JL, Jenkins C, Gally DL.

Microb Genom. 2016 Sep 8;2(9):e000084. doi: 10.1099/mgen.0.000084. eCollection 2016 Sep.

45.

Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing.

Shaaban S, Cowley LA, McAteer SP, Jenkins C, Dallman TJ, Bono JL, Gally DL.

Microb Genom. 2016 Dec 12;2(12):e000096. doi: 10.1099/mgen.0.000096. eCollection 2016 Dec.

46.

Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences.

Chattaway MA, Schaefer U, Tewolde R, Dallman TJ, Jenkins C.

J Clin Microbiol. 2017 Feb;55(2):616-623. doi: 10.1128/JCM.01790-16. Epub 2016 Dec 14.

47.

Antimicrobial resistance in Shiga toxin-producing Escherichia coli serogroups O157 and O26 isolated from human cases of diarrhoeal disease in England, 2015.

Day M, Doumith M, Jenkins C, Dallman TJ, Hopkins KL, Elson R, Godbole G, Woodford N.

J Antimicrob Chemother. 2017 Jan;72(1):145-152. Epub 2016 Sep 27.

PMID:
27678285
48.

Support vector machine applied to predict the zoonotic potential of E. coli O157 cattle isolates.

Lupolova N, Dallman TJ, Matthews L, Bono JL, Gally DL.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11312-11317. Epub 2016 Sep 19.

49.

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B.

Connor TR, Owen SV, Langridge G, Connell S, Nair S, Reuter S, Dallman TJ, Corander J, Tabing KC, Le Hello S, Fookes M, Doublet B, Zhou Z, Feltwell T, Ellington MJ, Herrera S, Gilmour M, Cloeckaert A, Achtman M, Parkhill J, Wain J, De Pinna E, Weill FX, Peters T, Thomson N.

MBio. 2016 Aug 23;7(4). pii: e00527-16. doi: 10.1128/mBio.00527-16.

50.

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings.

Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR.

Nat Genet. 2016 Oct;48(10):1211-1217. doi: 10.1038/ng.3644. Epub 2016 Aug 22. Erratum in: Nat Genet. 2017 Mar 30;49(4):651.

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