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Items: 1 to 50 of 52

1.

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, Rosenzweig CN, Palacios GF, Redden CL, Minogue TD, Chain PS.

Genome Announc. 2018 Jan 18;6(3). pii: e01144-17. doi: 10.1128/genomeA.01144-17. No abstract available.

2.

Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z.

Starkenburg SR, Polle JEW, Hovde B, Daligault HE, Davenport KW, Huang A, Neofotis P, McKie-Krisberg Z.

Genome Announc. 2017 Aug 10;5(32). pii: e00617-17. doi: 10.1128/genomeA.00617-17.

3.

Draft Genome Sequence of a Chromium-Reducing Strain, Pseudomonas fluorescens S613, Isolated from a Chromium-Contaminated Aquifer in Los Alamos, New Mexico.

Wang D, Boukhalfa H, Ware DS, Daligault HE.

Genome Announc. 2017 Apr 20;5(16). pii: e00241-17. doi: 10.1128/genomeA.00241-17.

4.

Genome Sequence of Porphyromonas gingivalis Strain A7A1-28.

Xie G, Chastain-Gross RP, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Zeng CL, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2017 Mar 9;5(10). pii: e00021-17. doi: 10.1128/genomeA.00021-17.

5.

Genome Sequence of Porphyromonas gingivalis Strain 381.

Chastain-Gross RP, Xie G, Bélanger M, Kumar D, Whitlock JA, Liu L, Raines SM, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2017 Jan 12;5(2). pii: e01467-16. doi: 10.1128/genomeA.01467-16.

6.

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater.

Wang D, Boukhalfa H, Marina O, Ware DS, Goering TJ, Sun F, Daligault HE, Lo CC, Vuyisich M, Starkenburg SR.

Microbiologyopen. 2017 Apr;6(2). doi: 10.1002/mbo3.423. Epub 2016 Nov 17.

7.

Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin.

Fixen KR, Starkenburg SR, Hovde BT, Johnson SL, Deodato CR, Daligault HE, Davenport KW, Harwood CS, Cattolico RA.

Genome Announc. 2016 Nov 3;4(6). pii: e01162-16. doi: 10.1128/genomeA.01162-16.

8.

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor.

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Ketheesan N, Mayo M, Hoffmaster A, Elrod MG, Wuthiekanun V, Tuanyok A, Norton R, Currie BJ, Wagner DM, Keim P, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2016 Apr 21;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16. No abstract available.

9.

Complete genome sequence of Methanospirillum hungatei type strain JF1.

Gunsalus RP, Cook LE, Crable B, Rohlin L, McDonald E, Mouttaki H, Sieber JR, Poweleit N, Zhou H, Lapidus AL, Daligault HE, Land M, Gilna P, Ivanova N, Kyrpides N, Culley DE, McInerney MJ.

Stand Genomic Sci. 2016 Jan 6;11:2. doi: 10.1186/s40793-015-0124-8. eCollection 2016.

10.

Draft Genomes for Eight Burkholderia mallei Isolates from Turkey.

Daligault HE, Johnson SL, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Wolcott MJ, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Chain PS.

Genome Announc. 2016 Jan 7;4(1). pii: e01234-15. doi: 10.1128/genomeA.01234-15.

11.

Genome Sequence of a Chromium-Reducing Strain, Bacillus cereus S612.

Wang D, Boukhalfa H, Ware DS, Reimus PW, Daligault HE, Gleasner CD, Johnson SL, Li PE.

Genome Announc. 2015 Dec 10;3(6). pii: e01392-15. doi: 10.1128/genomeA.01392-15.

12.

Genome Sequence of Porphyromonas gingivalis Strain AJW4.

Xie G, Chastain-Gross RP, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2015 Nov 5;3(6). pii: e01304-15. doi: 10.1128/genomeA.01304-15.

13.

Genome Sequence of Porphyromonas gingivalis Strain A7436.

Chastain-Gross RP, Xie G, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A.

Genome Announc. 2015 Sep 24;3(5). pii: e00927-15. doi: 10.1128/genomeA.00927-15.

14.

Finished Genome Assembly of Warm Spring Isolate Francisella novicida DPG 3A-IS.

Johnson SL, Minogue TD, Daligault HE, Wolcott MJ, Teshima H, Coyne SR, Davenport KW, Jaissle JG, Chain PS.

Genome Announc. 2015 Sep 17;3(5). pii: e01046-15. doi: 10.1128/genomeA.01046-15.

15.

Genome Assemblies for 11 Yersinia pestis Strains Isolated in the Caucasus Region.

Zhgenti E, Johnson SL, Davenport KW, Chanturia G, Daligault HE, Chain PS, Nikolich MP.

Genome Announc. 2015 Sep 17;3(5). pii: e01030-15. doi: 10.1128/genomeA.01030-15.

16.

Finished Genome Assembly of Yersinia pestis EV76D and KIM 10v.

Johnson SL, Minogue TD, Daligault HE, Wolcott MJ, Teshima H, Coyne SR, Davenport KW, Jaissle JG, Chain PS.

Genome Announc. 2015 Sep 17;3(5). pii: e01024-15. doi: 10.1128/genomeA.01024-15.

17.

Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor.

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00159-15. doi: 10.1128/genomeA.00159-15. Erratum in: Genome Announc. 2016;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16.

18.

Complete genome sequences for 35 biothreat assay-relevant bacillus species.

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, Rosenzweig CN, Palacios GF, Redden CL, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00151-15. doi: 10.1128/genomeA.00151-15. Erratum in: Genome Announc. 2018 Jan 18;6(3):.

19.

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00148-15. doi: 10.1128/genomeA.00148-15.

20.

Genome sequencing of 18 francisella strains to aid in assay development and testing.

Johnson SL, Daligault HE, Davenport KW, Coyne SR, Frey KG, Koroleva GI, Broomall SM, Bishop-Lilly KA, Bruce DC, Chertkov O, Freitas T, Jaissle J, Ladner JT, Rosenzweig CN, Gibbons HS, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00147-15. doi: 10.1128/genomeA.00147-15.

21.

Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei.

Johnson SL, Baker AL, Chain PS, Currie BJ, Daligault HE, Davenport KW, Davis CB, Inglis TJ, Kaestli M, Koren S, Mayo M, Merritt AJ, Price EP, Sarovich DS, Warner J, Rosovitz MJ.

Genome Announc. 2015 Feb 12;3(1). pii: e01282-14. doi: 10.1128/genomeA.01282-14.

22.

Draft Genome Sequence of Enterobacter cloacae Strain S611.

Wang D, Han CS, Dichosa AE, Gleasner CD, Johnson SL, Daligault HE, Davenport KW, Li PE, Pierson EA, Pierson LS 3rd.

Genome Announc. 2014 Dec 11;2(6). pii: e00710-14. doi: 10.1128/genomeA.00710-14.

23.

Whole-genome assemblies of 56 burkholderia species.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Johnson SL.

Genome Announc. 2014 Nov 20;2(6). pii: e01106-14. doi: 10.1128/genomeA.01106-14.

24.

Complete Genome Assembly of Staphylococcus epidermidis AmMS 205.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Nov 6;2(6). pii: e01059-14. doi: 10.1128/genomeA.01059-14.

25.

Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Redden CL, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Oct 30;2(5). pii: e01052-14. doi: 10.1128/genomeA.01052-14.

26.

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ.

Bishop-Lilly KA, Frey KG, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01084-14. doi: 10.1128/genomeA.01084-14.

27.

Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672.

Frey KG, Bishop-Lilly KA, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01082-14. doi: 10.1128/genomeA.01082-14.

28.

Complete Genome Assembly of Corynebacterium sp. Strain ATCC 6931.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Li PE, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01074-14. doi: 10.1128/genomeA.01074-14.

29.

Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01073-14. doi: 10.1128/genomeA.01073-14.

30.

Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Palacios GF, Redden CL, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01070-14. doi: 10.1128/genomeA.01070-14.

31.

Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01064-14. doi: 10.1128/genomeA.01064-14.

32.

Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01055-14. doi: 10.1128/genomeA.01055-14.

33.

Twenty Whole-Genome Bacillus sp. Assemblies.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Johnson SL.

Genome Announc. 2014 Oct 9;2(5). pii: e00958-14. doi: 10.1128/genomeA.00958-14.

34.

Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00968-14. doi: 10.1128/genomeA.00968-14.

35.

Genome Assembly of Serratia marcescens Type Strain ATCC 13880.

Daligault HE, Davenport KW, Minogue TD, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Rosenzweig CN, Scholz M, Teshima H, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00967-14. doi: 10.1128/genomeA.00967-14.

36.

Whole-genome sequences of nine francisella isolates.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00941-14. doi: 10.1128/genomeA.00941-14.

37.

Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00939-14. doi: 10.1128/genomeA.00939-14.

38.

Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247).

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Redden CL, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Oct 2;2(5). pii: e00961-14. doi: 10.1128/genomeA.00961-14.

39.

Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Chertkov O, Freitas T, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 2;2(5). pii: e00960-14. doi: 10.1128/genomeA.00960-14.

40.

Complete Genome Sequence of Stenotrophomonas maltophilia Type Strain 810-2 (ATCC 13637).

Davenport KW, Daligault HE, Minogue TD, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Li PE, Rosenzweig CN, Scholz MB, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00974-14. doi: 10.1128/genomeA.00974-14.

41.

Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853).

Daligault HE, Davenport KW, Minogue TD, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00973-14. doi: 10.1128/genomeA.00973-14.

42.

Whole-Genome Sequence of Listeria monocytogenes Type Strain 53 XXIII.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Li PE, Palacios GF, Redden CL, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00970-14. doi: 10.1128/genomeA.00970-14.

43.

Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk C, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Sep 18;2(5). pii: e00938-14. doi: 10.1128/genomeA.00938-14.

44.

Draft Genome Assembly of Delftia acidovorans Type Strain 2167.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Sep 18;2(5). pii: e00917-14. doi: 10.1128/genomeA.00917-14.

45.

Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk C, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Sep 18;2(5). pii: e00916-14. doi: 10.1128/genomeA.00916-14.

46.

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606.

Davenport KW, Daligault HE, Minogue TD, Bruce DC, Chain PS, Coyne SR, Jaissle JG, Koroleva GI, Ladner JT, Li PE, Palacios GF, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Aug 21;2(4). pii: e00832-14. doi: 10.1128/genomeA.00832-14.

47.

Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat.

Wang D, Han CS, Dichosa AE, Gleasner CD, Johnson SL, Daligault HE, Davenport KW, Li PE, Pierson EA, Pierson LS 3rd.

Genome Announc. 2013 Dec 26;1(6). pii: e01048-13. doi: 10.1128/genomeA.01048-13.

48.

Using phage display selected antibodies to dissect microbiomes for complete de novo genome sequencing of low abundance microbes.

Close DW, Ferrara F, Dichosa AE, Kumar S, Daughton AR, Daligault HE, Reitenga KG, Velappan N, Sanchez TC, Iyer S, Kiss C, Han CS, Bradbury AR.

BMC Microbiol. 2013 Nov 27;13:270. doi: 10.1186/1471-2180-13-270.

49.

Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601(T.).

Oosterkamp MJ, Veuskens T, Talarico Saia F, Weelink SA, Goodwin LA, Daligault HE, Bruce DC, Detter JC, Tapia R, Han CS, Land ML, Hauser LJ, Langenhoff AA, Gerritse J, van Berkel WJ, Pieper DH, Junca H, Smidt H, Schraa G, Davids M, Schaap PJ, Plugge CM, Stams AJ.

PLoS One. 2013 Jun 25;8(6):e66971. doi: 10.1371/journal.pone.0066971. Print 2013.

50.

Improving genome assemblies by sequencing PCR products with PacBio.

Zhang X, Davenport KW, Gu W, Daligault HE, Munk AC, Tashima H, Reitenga K, Green LD, Han CS.

Biotechniques. 2012 Jul;53(1):61-2. doi: 10.2144/0000113891.

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