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Items: 50

1.

Super-resolution images of peptidoglycan remodelling enzymes at the division site of Escherichia coli.

Söderström B, Chan H, Daley DO.

Curr Genet. 2019 Feb;65(1):99-101. doi: 10.1007/s00294-018-0869-x. Epub 2018 Jul 28. Review.

2.

A synbio approach for selection of highly expressed gene variants in Gram-positive bacteria.

Ferro R, Rennig M, Hernández-Rollán C, Daley DO, Nørholm MHH.

Microb Cell Fact. 2018 Mar 8;17(1):37. doi: 10.1186/s12934-018-0886-y.

3.

TARSyn: Tunable Antibiotic Resistance Devices Enabling Bacterial Synthetic Evolution and Protein Production.

Rennig M, Martinez V, Mirzadeh K, Dunas F, Röjsäter B, Daley DO, Nørholm MHH.

ACS Synth Biol. 2018 Feb 16;7(2):432-442. doi: 10.1021/acssynbio.7b00200. Epub 2018 Jan 4.

PMID:
29257878
4.

Increasing the permeability of Escherichia coli using MAC13243.

Muheim C, Götzke H, Eriksson AU, Lindberg S, Lauritsen I, Nørholm MHH, Daley DO.

Sci Rep. 2017 Dec 15;7(1):17629. doi: 10.1038/s41598-017-17772-6.

5.

Spatial separation of FtsZ and FtsN during cell division.

Söderström B, Chan H, Shilling PJ, Skoglund U, Daley DO.

Mol Microbiol. 2018 Feb;107(3):387-401. doi: 10.1111/mmi.13888. Epub 2017 Dec 19.

PMID:
29193432
6.

Selection of Highly Expressed Gene Variants in Escherichia coli Using Translationally Coupled Antibiotic Selection Markers.

Rennig M, Daley DO, Nørholm MHH.

Methods Mol Biol. 2018;1671:259-268. doi: 10.1007/978-1-4939-7295-1_16.

PMID:
29170964
7.

FtsZ does not initiate membrane constriction at the onset of division.

Daley DO, Skoglund U, Söderström B.

Sci Rep. 2016 Sep 9;6:33138. doi: 10.1038/srep33138.

8.

Codon Optimizing for Increased Membrane Protein Production: A Minimalist Approach.

Mirzadeh K, Toddo S, Nørholm MH, Daley DO.

Methods Mol Biol. 2016;1432:53-61. doi: 10.1007/978-1-4939-3637-3_4.

PMID:
27485329
9.

The bacterial divisome: more than a ring?

Söderström B, Daley DO.

Curr Genet. 2017 May;63(2):161-164. doi: 10.1007/s00294-016-0630-2. Epub 2016 Jul 8. Review.

PMID:
27387519
10.

Coordinated disassembly of the divisome complex in Escherichia coli.

Söderström B, Mirzadeh K, Toddo S, von Heijne G, Skoglund U, Daley DO.

Mol Microbiol. 2016 Aug;101(3):425-38. doi: 10.1111/mmi.13400. Epub 2016 May 23.

11.

Identification of a Fragment-Based Scaffold that Inhibits the Glycosyltransferase WaaG from Escherichia coli.

Muheim C, Bakali A, Engström O, Wieslander Å, Daley DO, Widmalm G.

Antibiotics (Basel). 2016 Jan 28;5(1). pii: E10. doi: 10.3390/antibiotics5010010.

12.

Trimeric microsomal glutathione transferase 2 displays one third of the sites reactivity.

Ahmad S, Thulasingam M, Palombo I, Daley DO, Johnson KA, Morgenstern R, Haeggström JZ, Rinaldo-Matthis A.

Biochim Biophys Acta. 2015 Oct;1854(10 Pt A):1365-71. doi: 10.1016/j.bbapap.2015.06.003. Epub 2015 Jun 9.

PMID:
26066610
13.

The Escherichia coli Envelope Stress Sensor CpxA Responds to Changes in Lipid Bilayer Properties.

Keller R, Ariöz C, Hansmeier N, Stenberg-Bruzell F, Burstedt M, Vikström D, Kelly A, Wieslander Å, Daley DO, Hunke S.

Biochemistry. 2015 Jun 16;54(23):3670-6. doi: 10.1021/acs.biochem.5b00242. Epub 2015 Jun 1.

PMID:
25993101
14.

Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector-Coding Sequence Junction.

Mirzadeh K, Martínez V, Toddo S, Guntur S, Herrgård MJ, Elofsson A, Nørholm MH, Daley DO.

ACS Synth Biol. 2015 Sep 18;4(9):959-65. doi: 10.1021/acssynbio.5b00033. Epub 2015 May 15.

PMID:
25951437
15.

Identification of putative substrates for the periplasmic chaperone YfgM in Escherichia coli using quantitative proteomics.

Götzke H, Muheim C, Altelaar AF, Heck AJ, Maddalo G, Daley DO.

Mol Cell Proteomics. 2015 Jan;14(1):216-26. doi: 10.1074/mcp.M114.043216. Epub 2014 Nov 17.

16.

Versatile in vitro system to study translocation and functional integration of bacterial outer membrane proteins.

Norell D, Heuck A, Tran-Thi TA, Götzke H, Jacob-Dubuisson F, Clausen T, Daley DO, Braun V, Müller M, Fan E.

Nat Commun. 2014 Nov 5;5:5396. doi: 10.1038/ncomms6396.

PMID:
25369922
17.

YfgM is an ancillary subunit of the SecYEG translocon in Escherichia coli.

Götzke H, Palombo I, Muheim C, Perrody E, Genevaux P, Kudva R, Müller M, Daley DO.

J Biol Chem. 2014 Jul 4;289(27):19089-97. doi: 10.1074/jbc.M113.541672. Epub 2014 May 22.

18.

Heterologous overexpression of a monotopic glucosyltransferase (MGS) induces fatty acid remodeling in Escherichia coli membranes.

Ariöz C, Götzke H, Lindholm L, Eriksson J, Edwards K, Daley DO, Barth A, Wieslander A.

Biochim Biophys Acta. 2014 Jul;1838(7):1862-70. doi: 10.1016/j.bbamem.2014.04.001. Epub 2014 Apr 12.

19.

Disassembly of the divisome in Escherichia coli: evidence that FtsZ dissociates before compartmentalization.

Söderström B, Skoog K, Blom H, Weiss DS, von Heijne G, Daley DO.

Mol Microbiol. 2014 Apr;92(1):1-9. doi: 10.1111/mmi.12534. Epub 2014 Feb 20.

20.

Why is the GMN motif conserved in the CorA/Mrs2/Alr1 superfamily of magnesium transport proteins?

Palombo I, Daley DO, Rapp M.

Biochemistry. 2013 Jul 16;52(28):4842-7. doi: 10.1021/bi4007397. Epub 2013 Jul 9.

PMID:
23781956
21.

Improved production of membrane proteins in Escherichia coli by selective codon substitutions.

Nørholm MH, Toddo S, Virkki MT, Light S, von Heijne G, Daley DO.

FEBS Lett. 2013 Aug 2;587(15):2352-8. doi: 10.1016/j.febslet.2013.05.063. Epub 2013 Jun 12.

22.

The outer mitochondrial membrane in higher plants.

Duncan O, van der Merwe MJ, Daley DO, Whelan J.

Trends Plant Sci. 2013 Apr;18(4):207-17. doi: 10.1016/j.tplants.2012.12.004. Epub 2013 Jan 2. Review.

PMID:
23291162
23.

Heme incorporation into the cytochrome bo3 occurs at a late stage of assembly.

Palombo I, Daley DO.

FEBS Lett. 2012 Nov 30;586(23):4197-202. doi: 10.1016/j.febslet.2012.10.021. Epub 2012 Oct 23.

24.

Application of split-green fluorescent protein for topology mapping membrane proteins in Escherichia coli.

Toddo S, Söderström B, Palombo I, von Heijne G, Nørholm MH, Daley DO.

Protein Sci. 2012 Oct;21(10):1571-6. doi: 10.1002/pro.2131. Epub 2012 Aug 21.

25.

The periplasmic loop provides stability to the open state of the CorA magnesium channel.

Palombo I, Daley DO, Rapp M.

J Biol Chem. 2012 Aug 10;287(33):27547-55. doi: 10.1074/jbc.M112.371484. Epub 2012 Jun 21.

26.

Antiparallel dimers of the small multidrug resistance protein EmrE are more stable than parallel dimers.

Lloris-Garcerá P, Bianchi F, Slusky JS, Seppälä S, Daley DO, von Heijne G.

J Biol Chem. 2012 Jul 27;287(31):26052-9. doi: 10.1074/jbc.M112.357590. Epub 2012 Jun 14.

27.

The Escherichia coli cell division protein ZipA forms homodimers prior to association with FtsZ.

Skoog K, Daley DO.

Biochemistry. 2012 Feb 21;51(7):1407-15. doi: 10.1021/bi2015647. Epub 2012 Feb 9.

PMID:
22304478
28.

Sequential closure of the cytoplasm and then the periplasm during cell division in Escherichia coli.

Skoog K, Söderström B, Widengren J, von Heijne G, Daley DO.

J Bacteriol. 2012 Feb;194(3):584-6. doi: 10.1128/JB.06091-11. Epub 2011 Nov 18.

29.

Manipulating the genetic code for membrane protein production: what have we learnt so far?

Nørholm MH, Light S, Virkki MT, Elofsson A, von Heijne G, Daley DO.

Biochim Biophys Acta. 2012 Apr;1818(4):1091-6. doi: 10.1016/j.bbamem.2011.08.018. Epub 2011 Aug 22. Review.

30.

A reference map of the membrane proteome of Enterococcus faecalis.

Maddalo G, Chovanec P, Stenberg-Bruzell F, Nielsen HV, Jensen-Seaman MI, Ilag LL, Kline KA, Daley DO.

Proteomics. 2011 Oct;11(19):3935-41. doi: 10.1002/pmic.201100103. Epub 2011 Aug 31.

31.

Penicillin-binding protein 5 can form a homo-oligomeric complex in the inner membrane of Escherichia coli.

Skoog K, Bruzell FS, Ducroux A, Hellberg M, Johansson H, Lehtiö J, Högbom M, Daley DO.

Protein Sci. 2011 Sep;20(9):1520-9. doi: 10.1002/pro.677. Epub 2011 Jul 13.

32.

Systematic analysis of native membrane protein complexes in Escherichia coli.

Maddalo G, Stenberg-Bruzell F, Götzke H, Toddo S, Björkholm P, Eriksson H, Chovanec P, Genevaux P, Lehtiö J, Ilag LL, Daley DO.

J Proteome Res. 2011 Apr 1;10(4):1848-59. doi: 10.1021/pr101105c. Epub 2011 Feb 18.

PMID:
21210718
33.

Estimating Z-ring radius and contraction in dividing Escherichia coli.

Strömqvist J, Skoog K, Daley DO, Widengren J, von Heijne G.

Mol Microbiol. 2010 Apr;76(1):151-8. doi: 10.1111/j.1365-2958.2010.07087.x. Epub 2010 Feb 10.

34.

Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why?

Bernsel A, Daley DO.

Trends Microbiol. 2009 Oct;17(10):444-9. doi: 10.1016/j.tim.2009.07.005. Epub 2009 Sep 16.

PMID:
19766000
35.

The assembly of membrane proteins into complexes.

Daley DO.

Curr Opin Struct Biol. 2008 Aug;18(4):420-4. doi: 10.1016/j.sbi.2008.04.006. Epub 2008 Jun 5. Review.

PMID:
18539022
36.

Membrane protein structural biology--how far can the bugs take us?

Granseth E, Seppälä S, Rapp M, Daley DO, Von Heijne G.

Mol Membr Biol. 2007 Sep-Dec;24(5-6):329-32. Review.

PMID:
17710636
37.

Assembly of the cytochrome bo3 complex.

Stenberg F, von Heijne G, Daley DO.

J Mol Biol. 2007 Aug 17;371(3):765-73. Epub 2007 May 21.

PMID:
17583738
38.

Experimentally constrained topology models for 51,208 bacterial inner membrane proteins.

Granseth E, Daley DO, Rapp M, Melén K, von Heijne G.

J Mol Biol. 2005 Sep 23;352(3):489-94.

PMID:
16120447
39.

Protein complexes of the Escherichia coli cell envelope.

Stenberg F, Chovanec P, Maslen SL, Robinson CV, Ilag LL, von Heijne G, Daley DO.

J Biol Chem. 2005 Oct 14;280(41):34409-19. Epub 2005 Aug 3.

40.

Adaptations required for mitochondrial import following mitochondrial to nucleus gene transfer of ribosomal protein S10.

Murcha MW, Rudhe C, Elhafez D, Adams KL, Daley DO, Whelan J.

Plant Physiol. 2005 Aug;138(4):2134-44. Epub 2005 Jul 22.

41.

A scalable, GFP-based pipeline for membrane protein overexpression screening and purification.

Drew D, Slotboom DJ, Friso G, Reda T, Genevaux P, Rapp M, Meindl-Beinker NM, Lambert W, Lerch M, Daley DO, Van Wijk KJ, Hirst J, Kunji E, De Gier JW.

Protein Sci. 2005 Aug;14(8):2011-7. Epub 2005 Jun 29.

42.

Global topology analysis of the Escherichia coli inner membrane proteome.

Daley DO, Rapp M, Granseth E, Melén K, Drew D, von Heijne G.

Science. 2005 May 27;308(5726):1321-3.

43.

Why genes persist in organelle genomes.

Daley DO, Whelan J.

Genome Biol. 2005;6(5):110. Epub 2005 Apr 29.

44.

Experimentally based topology models for E. coli inner membrane proteins.

Rapp M, Drew D, Daley DO, Nilsson J, Carvalho T, Melén K, De Gier JW, Von Heijne G.

Protein Sci. 2004 Apr;13(4):937-45.

45.

Respiratory gene expression in soybean cotyledons during post-germinative development.

Daley DO, Considine MJ, Howell KA, Millar AH, Day DA, Whelan J.

Plant Mol Biol. 2003 Mar;51(5):745-55.

PMID:
12678560
46.

Intracellular gene transfer: reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase.

Daley DO, Clifton R, Whelan J.

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10510-5. Epub 2002 Jul 25.

47.
48.

Gene transfer from mitochondrion to nucleus: novel mechanisms for gene activation from Cox2.

Daley DO, Adams KL, Clifton R, Qualmann S, Millar AH, Palmer JD, Pratje E, Whelan J.

Plant J. 2002 Apr;30(1):11-21.

49.

The expression of alternative oxidase and uncoupling protein during fruit ripening in mango.

Considine MJ, Daley DO, Whelan J.

Plant Physiol. 2001 Aug;126(4):1619-29.

50.

Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants.

Adams KL, Daley DO, Qiu YL, Whelan J, Palmer JD.

Nature. 2000 Nov 16;408(6810):354-7.

PMID:
11099041

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