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Items: 37

1.

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners.

Melters DP, Pitman M, Rakshit T, Dimitriadis EK, Bui M, Papoian GA, Dalal Y.

Proc Natl Acad Sci U S A. 2019 Nov 11. pii: 201911880. doi: 10.1073/pnas.1911880116. [Epub ahead of print]

2.

The Oligomerization Landscape of Histones.

Zhao H, Winogradoff D, Dalal Y, Papoian GA.

Biophys J. 2019 May 21;116(10):1845-1855. doi: 10.1016/j.bpj.2019.03.021. Epub 2019 Apr 17.

PMID:
31005236
3.

Correction: A long non-coding RNA is required for targeting centromeric protein A to the human centromere.

Quénet D, Dalal Y.

Elife. 2018 Nov 1;7. pii: e41593. doi: 10.7554/eLife.41593.

4.

HJURP antagonizes CENP-A mislocalization driven by the H3.3 chaperones HIRA and DAXX.

Nye J, Sturgill D, Athwal R, Dalal Y.

PLoS One. 2018 Oct 26;13(10):e0205948. doi: 10.1371/journal.pone.0205948. eCollection 2018. Erratum in: PLoS One. 2018 Nov 12;13(11):e0207631.

5.

The Art of War: harnessing the epigenome against cancer.

Nye J, Melters DP, Dalal Y.

F1000Res. 2018 Feb 2;7:141. doi: 10.12688/f1000research.12833.1. eCollection 2018. Review.

6.

Internal modifications in the CENP-A nucleosome modulate centromeric dynamics.

Bui M, Pitman M, Nuccio A, Roque S, Donlin-Asp PG, Nita-Lazar A, Papoian GA, Dalal Y.

Epigenetics Chromatin. 2017 Apr 4;10:17. doi: 10.1186/s13072-017-0124-6. eCollection 2017.

7.

Mass Spectrometry-Based Methodology for Identification of Native Histone Variant Modifications From Mammalian Tissues and Solid Tumors.

Nuccio AG, Bui M, Dalal Y, Nita-Lazar A.

Methods Enzymol. 2017;586:275-290. doi: 10.1016/bs.mie.2016.09.035. Epub 2016 Nov 2.

8.

The supercoiling state of DNA determines the handedness of both H3 and CENP-A nucleosomes.

Vlijm R, Kim SH, De Zwart PL, Dalal Y, Dekker C.

Nanoscale. 2017 Feb 2;9(5):1862-1870. doi: 10.1039/c6nr06245h.

PMID:
28094382
9.

CENP-A and H3 Nucleosomes Display a Similar Stability to Force-Mediated Disassembly.

Kim SH, Vlijm R, van der Torre J, Dalal Y, Dekker C.

PLoS One. 2016 Nov 7;11(11):e0165078. doi: 10.1371/journal.pone.0165078. eCollection 2016.

10.

Promiscuous Histone Mis-Assembly Is Actively Prevented by Chaperones.

Zhao H, Winogradoff D, Bui M, Dalal Y, Papoian GA.

J Am Chem Soc. 2016 Oct 12;138(40):13207-13218. Epub 2016 Aug 12.

PMID:
27454815
11.

Identifying Centromeric RNAs Involved in Histone Dynamics In Vivo.

Quénet D, Sturgill D, Dalal Y.

Methods Enzymol. 2016;573:445-66. doi: 10.1016/bs.mie.2016.01.010. Epub 2016 Mar 24.

PMID:
27372766
12.

Shearing of the CENP-A dimerization interface mediates plasticity in the octameric centromeric nucleosome.

Winogradoff D, Zhao H, Dalal Y, Papoian GA.

Sci Rep. 2015 Nov 25;5:17038. doi: 10.1038/srep17038.

13.

Chromatin Dynamics in Vivo: A Game of Musical Chairs.

Melters DP, Nye J, Zhao H, Dalal Y.

Genes (Basel). 2015 Aug 7;6(3):751-76. doi: 10.3390/genes6030751. Review.

14.

CENP-A nucleosomes localize to transcription factor hotspots and subtelomeric sites in human cancer cells.

Athwal RK, Walkiewicz MP, Baek S, Fu S, Bui M, Camps J, Ried T, Sung MH, Dalal Y.

Epigenetics Chromatin. 2015 Jan 13;8:2. doi: 10.1186/1756-8935-8-2. eCollection 2015.

15.

Correction: a long non-coding RNA is required for targeting centromeric protein A to the human centromere.

Quénet D, Dalal Y.

Elife. 2015 Mar 4;4. doi: 10.7554/eLife.07239. No abstract available.

16.
17.

Tracking histone variant nucleosomes across the human cell cycle using biophysical, biochemical, and cytological analyses.

Walkiewicz MP, Bui M, Quénet D, Dalal Y.

Methods Mol Biol. 2014;1170:589-615. doi: 10.1007/978-1-4939-0888-2_34.

18.

Histone variants: the tricksters of the chromatin world.

Volle C, Dalal Y.

Curr Opin Genet Dev. 2014 Apr;25:8-14,138. doi: 10.1016/j.gde.2013.11.006. Epub 2014 Jan 24. Review.

19.

CENP-A octamers do not confer a reduction in nucleosome height by AFM.

Walkiewicz MP, Dimitriadis EK, Dalal Y.

Nat Struct Mol Biol. 2014 Jan;21(1):2-3. doi: 10.1038/nsmb.2742. No abstract available.

20.

Now you see it, now you don't: a biochemist's primer for advances in high-resolution microscopy: comment on "Biomolecular dynamics and binding studies in the living cell" by Stephan Diekmann and Christian Hoischen.

Dalal Y, McNally JG.

Phys Life Rev. 2014 Mar;11(1):36-7; discussion 38. doi: 10.1016/j.plrev.2013.11.007. Epub 2013 Nov 22. No abstract available.

PMID:
24291566
21.

The CENP-A nucleosome: a battle between Dr Jekyll and Mr Hyde.

Bui M, Walkiewicz MP, Dimitriadis EK, Dalal Y.

Nucleus. 2013 Jan-Feb;4(1):37-42. doi: 10.4161/nucl.23588. Epub 2013 Jan 1. Review.

22.

Through thick and thin: the conundrum of chromatin fibre folding in vivo.

Quénet D, McNally JG, Dalal Y.

EMBO Rep. 2012 Nov 6;13(11):943-4. doi: 10.1038/embor.2012.143. Epub 2012 Oct 5. No abstract available.

23.

The CENP-A nucleosome: a dynamic structure and role at the centromere.

Quénet D, Dalal Y.

Chromosome Res. 2012 Jul;20(5):465-79. doi: 10.1007/s10577-012-9301-4. Review.

24.

Cell-cycle-dependent structural transitions in the human CENP-A nucleosome in vivo.

Bui M, Dimitriadis EK, Hoischen C, An E, Quénet D, Giebe S, Nita-Lazar A, Diekmann S, Dalal Y.

Cell. 2012 Jul 20;150(2):317-26. doi: 10.1016/j.cell.2012.05.035.

25.

Tetrameric organization of vertebrate centromeric nucleosomes.

Dimitriadis EK, Weber C, Gill RK, Diekmann S, Dalal Y.

Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20317-22. doi: 10.1073/pnas.1009563107. Epub 2010 Nov 8.

26.

Centromere protein A dynamics in human pluripotent stem cell self-renewal, differentiation and DNA damage.

Ambartsumyan G, Gill RK, Perez SD, Conway D, Vincent J, Dalal Y, Clark AT.

Hum Mol Genet. 2010 Oct 15;19(20):3970-82. doi: 10.1093/hmg/ddq312. Epub 2010 Jul 22.

27.

Down the rabbit hole of centromere assembly and dynamics.

Dalal Y, Bui M.

Curr Opin Cell Biol. 2010 Jun;22(3):392-402. doi: 10.1016/j.ceb.2010.02.005. Epub 2010 Mar 19. Review.

28.

Epigenetic specification of centromeres.

Dalal Y.

Biochem Cell Biol. 2009 Feb;87(1):273-82. doi: 10.1139/O08-135. Review.

PMID:
19234541
29.

Single-epitope recognition imaging of native chromatin.

Wang H, Dalal Y, Henikoff S, Lindsay S.

Epigenetics Chromatin. 2008 Dec 17;1(1):10. doi: 10.1186/1756-8935-1-10.

30.

Structure, dynamics, and evolution of centromeric nucleosomes.

Dalal Y, Furuyama T, Vermaak D, Henikoff S.

Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):15974-81. Epub 2007 Sep 24. Review.

31.

Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells.

Dalal Y, Wang H, Lindsay S, Henikoff S.

PLoS Biol. 2007 Aug;5(8):e218.

32.

Chaperone-mediated assembly of centromeric chromatin in vitro.

Furuyama T, Dalal Y, Henikoff S.

Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6172-7. Epub 2006 Apr 6.

33.

Centromeric chromatin: what makes it unique?

Henikoff S, Dalal Y.

Curr Opin Genet Dev. 2005 Apr;15(2):177-84. Review.

PMID:
15797200
34.

Long-range oscillation in a periodic DNA sequence motif may influence nucleosome array formation.

Dalal Y, Fleury TJ, Cioffi A, Stein A.

Nucleic Acids Res. 2005 Feb 16;33(3):934-45. Print 2005.

35.

DNA sequence alterations affect nucleosome array formation of the chicken ovalbumin gene.

Cioffi A, Dalal Y, Stein A.

Biochemistry. 2004 Jun 1;43(21):6709-22.

PMID:
15157105
36.

Oligodendroglioma: clinical profile and treatment results.

Jacob R, Jyothirmayi R, Dalal Y, Nambiar U, Rajan B, Nair MK.

Neurol India. 2002 Dec;50(4):462-6.

37.

Circle ligation of in vitro assembled chromatin indicates a highly flexible structure.

Stein A, Dalal Y, Fleury TJ.

Nucleic Acids Res. 2002 Dec 1;30(23):5103-9.

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