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Items: 1 to 50 of 68

1.

31° South: The physiology of adaptation to arid conditions in a passerine bird.

Ribeiro ÂM, Puetz L, Pattinson NB, Dalén L, Deng Y, Zhang G, da Fonseca RR, Smit B, Gilbert MTP.

Mol Ecol. 2019 Jul 10. doi: 10.1111/mec.15176. [Epub ahead of print]

PMID:
31291502
2.

Genetic turnovers and northern survival during the last glacial maximum in European brown bears.

Ersmark E, Baryshnikov G, Higham T, Argant A, Castaños P, Döppes D, Gasparik M, Germonpré M, Lidén K, Lipecki G, Marciszak A, Miller R, Moreno-García M, Pacher M, Robu M, Rodriguez-Varela R, Rojo Guerra M, Sabol M, Spassov N, Storå J, Valdiosera C, Villaluenga A, Stewart JR, Dalén L.

Ecol Evol. 2019 Apr 16;9(10):5891-5905. doi: 10.1002/ece3.5172. eCollection 2019 May.

3.

Altitude effects on spatial components of vascular plant diversity in a subarctic mountain tundra.

Naud L, Måsviken J, Freire S, Angerbjörn A, Dalén L, Dalerum F.

Ecol Evol. 2019 Mar 22;9(8):4783-4795. doi: 10.1002/ece3.5081. eCollection 2019 Apr.

4.

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.

van der Valk T, Vezzi F, Ormestad M, Dalén L, Guschanski K.

Mol Ecol Resour. 2019 Mar 8. doi: 10.1111/1755-0998.13009. [Epub ahead of print]

PMID:
30848092
5.

Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise.

Prost S, Armstrong EE, Nylander J, Thomas GWC, Suh A, Petersen B, Dalen L, Benz BW, Blom MPK, Palkopoulou E, Ericson PGP, Irestedt M.

Gigascience. 2019 May 1;8(5). pii: giz003. doi: 10.1093/gigascience/giz003.

6.

Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas.

van der Valk T, Díez-Del-Molino D, Marques-Bonet T, Guschanski K, Dalén L.

Curr Biol. 2019 Jan 7;29(1):165-170.e6. doi: 10.1016/j.cub.2018.11.055. Epub 2018 Dec 27.

PMID:
30595519
7.

Population genomics of grey wolves and wolf-like canids in North America.

Sinding MS, Gopalakrishan S, Vieira FG, Samaniego Castruita JA, Raundrup K, Heide Jørgensen MP, Meldgaard M, Petersen B, Sicheritz-Ponten T, Mikkelsen JB, Marquard-Petersen U, Dietz R, Sonne C, Dalén L, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP.

PLoS Genet. 2018 Nov 12;14(11):e1007745. doi: 10.1371/journal.pgen.1007745. eCollection 2018 Nov.

8.

Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads.

Krzewińska M, Kılınç GM, Juras A, Koptekin D, Chyleński M, Nikitin AG, Shcherbakov N, Shuteleva I, Leonova T, Kraeva L, Sungatov FA, Sultanova AN, Potekhina I, Łukasik S, Krenz-Niedbała M, Dalén L, Sinika V, Jakobsson M, Storå J, Götherström A.

Sci Adv. 2018 Oct 3;4(10):eaat4457. doi: 10.1126/sciadv.aat4457. eCollection 2018 Oct.

9.

Mitogenome evolution in the last surviving woolly mammoth population reveals neutral and functional consequences of small population size.

Pečnerová P, Palkopoulou E, Wheat CW, Skoglund P, Vartanyan S, Tikhonov A, Nikolskiy P, van der Plicht J, Díez-Del-Molino D, Dalén L.

Evol Lett. 2017 Nov 28;1(6):292-303. doi: 10.1002/evl3.33. eCollection 2017 Dec.

10.

Partial genomic survival of cave bears in living brown bears.

Barlow A, Cahill JA, Hartmann S, Theunert C, Xenikoudakis G, Fortes GG, Paijmans JLA, Rabeder G, Frischauf C, Grandal-d'Anglade A, García-Vázquez A, Murtskhvaladze M, Saarma U, Anijalg P, Skrbinšek T, Bertorelle G, Gasparian B, Bar-Oz G, Pinhasi R, Slatkin M, Dalén L, Shapiro B, Hofreiter M.

Nat Ecol Evol. 2018 Oct;2(10):1563-1570. doi: 10.1038/s41559-018-0654-8. Epub 2018 Aug 27.

11.

Eradication genomics-lessons for parasite control.

Cotton JA, Berriman M, Dalén L, Barnes I.

Science. 2018 Jul 13;361(6398):130-131. doi: 10.1126/science.aar6609. Epub 2018 Jul 12. No abstract available.

PMID:
30002241
12.

Significant loss of mitochondrial diversity within the last century due to extinction of peripheral populations in eastern gorillas.

van der Valk T, Sandoval-Castellanos E, Caillaud D, Ngobobo U, Binyinyi E, Nishuli R, Stoinski T, Gilissen E, Sonet G, Semal P, Kalthoff DC, Dalén L, Guschanski K.

Sci Rep. 2018 Apr 25;8(1):6551. doi: 10.1038/s41598-018-24497-7.

13.

Full Mitogenomes in the Critically Endangered Kākāpō Reveal Major Post-Glacial and Anthropogenic Effects on Neutral Genetic Diversity.

Dussex N, von Seth J, Robertson BC, Dalén L.

Genes (Basel). 2018 Apr 19;9(4). pii: E220. doi: 10.3390/genes9040220.

14.

Extended and Continuous Decline in Effective Population Size Results in Low Genomic Diversity in the World's Rarest Hyena Species, the Brown Hyena.

Westbury MV, Hartmann S, Barlow A, Wiesel I, Leo V, Welch R, Parker DM, Sicks F, Ludwig A, Dalén L, Hofreiter M.

Mol Biol Evol. 2018 May 1;35(5):1225-1237. doi: 10.1093/molbev/msy037.

15.

A comprehensive genomic history of extinct and living elephants.

Palkopoulou E, Lipson M, Mallick S, Nielsen S, Rohland N, Baleka S, Karpinski E, Ivancevic AM, To TH, Kortschak RD, Raison JM, Qu Z, Chin TJ, Alt KW, Claesson S, Dalén L, MacPhee RDE, Meller H, Roca AL, Ryder OA, Heiman D, Young S, Breen M, Williams C, Aken BL, Ruffier M, Karlsson E, Johnson J, Di Palma F, Alfoldi J, Adelson DL, Mailund T, Munch K, Lindblad-Toh K, Hofreiter M, Poinar H, Reich D.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2566-E2574. doi: 10.1073/pnas.1720554115. Epub 2018 Feb 26.

16.

Quantifying Temporal Genomic Erosion in Endangered Species.

Díez-Del-Molino D, Sánchez-Barreiro F, Barnes I, Gilbert MTP, Dalén L.

Trends Ecol Evol. 2018 Mar;33(3):176-185. doi: 10.1016/j.tree.2017.12.002. Epub 2017 Dec 27.

PMID:
29289355
17.

Genome-Based Sexing Provides Clues about Behavior and Social Structure in the Woolly Mammoth.

Pečnerová P, Díez-Del-Molino D, Dussex N, Feuerborn T, von Seth J, van der Plicht J, Nikolskiy P, Tikhonov A, Vartanyan S, Dalén L.

Curr Biol. 2017 Nov 20;27(22):3505-3510.e3. doi: 10.1016/j.cub.2017.09.064. Epub 2017 Nov 2.

18.

Demographic inference from whole-genome and RAD sequencing data suggests alternating human impacts on goose populations since the last ice age.

Pujolar JM, Dalén L, Hansen MM, Madsen J.

Mol Ecol. 2017 Nov;26(22):6270-6283. doi: 10.1111/mec.14374. Epub 2017 Nov 3.

PMID:
28980346
19.
20.

First de novo whole genome sequencing and assembly of the pink-footed goose.

Pujolar JM, Dalén L, Olsen RA, Hansen MM, Madsen J.

Genomics. 2018 Mar;110(2):75-79. doi: 10.1016/j.ygeno.2017.08.008. Epub 2017 Aug 30.

PMID:
28860085
21.

Whole mitochondrial genome capture from faecal samples and museum-preserved specimens.

van der Valk T, Lona Durazo F, Dalén L, Guschanski K.

Mol Ecol Resour. 2017 Nov;17(6):e111-e121. doi: 10.1111/1755-0998.12699. Epub 2017 Aug 3.

PMID:
28675688
22.

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics.

Gopalakrishnan S, Samaniego Castruita JA, Sinding MS, Kuderna LFK, Räikkönen J, Petersen B, Sicheritz-Ponten T, Larson G, Orlando L, Marques-Bonet T, Hansen AJ, Dalén L, Gilbert MTP.

BMC Genomics. 2017 Jun 29;18(1):495. doi: 10.1186/s12864-017-3883-3.

23.

Identifying Bird Remains Using Ancient DNA Barcoding.

Dalén L, Lagerholm VK, Nylander JAA, Barton N, Bochenski ZM, Tomek T, Rudling D, Ericson PGP, Irestedt M, Stewart JR.

Genes (Basel). 2017 Jun 21;8(6). pii: E169. doi: 10.3390/genes8060169.

24.

The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis.

Chang D, Knapp M, Enk J, Lippold S, Kircher M, Lister A, MacPhee RD, Widga C, Czechowski P, Sommer R, Hodges E, Stümpel N, Barnes I, Dalén L, Derevianko A, Germonpré M, Hillebrand-Voiculescu A, Constantin S, Kuznetsova T, Mol D, Rathgeber T, Rosendahl W, Tikhonov AN, Willerslev E, Hannon G, Lalueza-Fox C, Joger U, Poinar H, Hofreiter M, Shapiro B.

Sci Rep. 2017 Mar 22;7:44585. doi: 10.1038/srep44585.

25.

Spatial subsidies in spider diets vary with shoreline structure: Complementary evidence from molecular diet analysis and stable isotopes.

Hambäck PA, Weingartner E, Dalén L, Wirta H, Roslin T.

Ecol Evol. 2016 Oct 26;6(23):8431-8439. doi: 10.1002/ece3.2536. eCollection 2016 Dec.

26.

Range shifts or extinction? Ancient DNA and distribution modelling reveal past and future responses to climate warming in cold-adapted birds.

Lagerholm VK, Sandoval-Castellanos E, Vaniscotte A, Potapova OR, Tomek T, Bochenski ZM, Shepherd P, Barton N, Van Dyck MC, Miller R, Höglund J, Yoccoz NG, Dalén L, Stewart JR.

Glob Chang Biol. 2017 Apr;23(4):1425-1435. doi: 10.1111/gcb.13522. Epub 2016 Oct 20.

PMID:
27762483
27.

Evolutionary History of the Nesophontidae, the Last Unplaced Recent Mammal Family.

Brace S, Thomas JA, Dalén L, Burger J, MacPhee RD, Barnes I, Turvey ST.

Mol Biol Evol. 2016 Dec;33(12):3095-3103. Epub 2016 Sep 13.

PMID:
27624716
28.

Changes in variation at the MHC class II DQA locus during the final demise of the woolly mammoth.

Pečnerová P, Díez-Del-Molino D, Vartanyan S, Dalén L.

Sci Rep. 2016 May 4;6:25274. doi: 10.1038/srep25274.

29.

Inbreeding depression in a critically endangered carnivore.

Norén K, Godoy E, Dalén L, Meijer T, Angerbjörn A.

Mol Ecol. 2016 Jul;25(14):3309-18. doi: 10.1111/mec.13674.

PMID:
27135988
30.

Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden.

Zepeda Mendoza ML, Lundberg J, Ivarsson M, Campos P, Nylander JA, Sallstedt T, Dalen L.

PLoS One. 2016 Mar 17;11(3):e0151577. doi: 10.1371/journal.pone.0151577. eCollection 2016.

31.

Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings.

Palkopoulou E, Baca M, Abramson NI, Sablin M, Socha P, Nadachowski A, Prost S, Germonpré M, Kosintsev P, Smirnov NG, Vartanyan S, Ponomarev D, Nyström J, Nikolskiy P, Jass CN, Litvinov YN, Kalthoff DC, Grigoriev S, Fadeeva T, Douka A, Higham TF, Ersmark E, Pitulko V, Pavlova E, Stewart JR, Węgleński P, Stankovic A, Dalén L.

Glob Chang Biol. 2016 May;22(5):1710-21. doi: 10.1111/gcb.13214. Epub 2016 Feb 25.

PMID:
26919067
32.

Reply to Garner et al.

Shafer ABA, Wolf JBW, Alves PC, Bergström L, Colling G, Dalén L, De Meester L, Ekblom R, Fior S, Hajibabaei M, Hoezel AR, Hoglund J, Jensen EL, Krützen M, Norman AJ, Österling EM, Ouborg NJ, Piccolo J, Primmer CR, Reed FA, Roumet M, Salmona J, Schwartz MK, Segelbacher G, Thaulow J, Valtonen M, Vergeer P, Weissensteiner M, Wheat CW, Vilà C, Zieliński P.

Trends Ecol Evol. 2016 Feb;31(2):83-84. doi: 10.1016/j.tree.2015.11.010. Epub 2015 Dec 17. No abstract available.

PMID:
26704456
33.

Consequences of a demographic bottleneck on genetic structure and variation in the Scandinavian brown bear.

Xenikoudakis G, Ersmark E, Tison JL, Waits L, Kindberg J, Swenson JE, Dalén L.

Mol Ecol. 2015 Jul;24(13):3441-54. doi: 10.1111/mec.13239. Epub 2015 Jun 4.

PMID:
26042479
34.

Ancient wolf genome reveals an early divergence of domestic dog ancestors and admixture into high-latitude breeds.

Skoglund P, Ersmark E, Palkopoulou E, Dalén L.

Curr Biol. 2015 Jun 1;25(11):1515-9. doi: 10.1016/j.cub.2015.04.019. Epub 2015 May 21.

35.

Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth.

Palkopoulou E, Mallick S, Skoglund P, Enk J, Rohland N, Li H, Omrak A, Vartanyan S, Poinar H, Götherström A, Reich D, Dalén L.

Curr Biol. 2015 May 18;25(10):1395-400. doi: 10.1016/j.cub.2015.04.007. Epub 2015 Apr 23.

36.

Genomics and the challenging translation into conservation practice.

Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, Höglund J, Jensen EL, Krause J, Kristensen TN, Krützen M, McKay JK, Norman AJ, Ogden R, Österling EM, Ouborg NJ, Piccolo J, Popović D, Primmer CR, Reed FA, Roumet M, Salmona J, Schenekar T, Schwartz MK, Segelbacher G, Senn H, Thaulow J, Valtonen M, Veale A, Vergeer P, Vijay N, Vilà C, Weissensteiner M, Wennerström L, Wheat CW, Zieliński P.

Trends Ecol Evol. 2015 Feb;30(2):78-87. doi: 10.1016/j.tree.2014.11.009. Epub 2014 Dec 17.

PMID:
25534246
37.

Back to BaySICS: a user-friendly program for Bayesian Statistical Inference from Coalescent Simulations.

Sandoval-Castellanos E, Palkopoulou E, Dalén L.

PLoS One. 2014 May 27;9(5):e98011. doi: 10.1371/journal.pone.0098011. eCollection 2014.

38.

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C, Wray G, Li J, He W, Wang Z, Fu W, Xiang X, Morgan CC, Doherty A, O'Connell MJ, McInerney JO, Born EW, Dalén L, Dietz R, Orlando L, Sonne C, Zhang G, Nielsen R, Willerslev E, Wang J.

Cell. 2014 May 8;157(4):785-94. doi: 10.1016/j.cell.2014.03.054.

39.

On the origin of the Norwegian lemming.

Lagerholm VK, Sandoval-Castellanos E, Ehrich D, Abramson NI, Nadachowski A, Kalthoff DC, Germonpré M, Angerbjörn A, Stewart JR, Dalén L.

Mol Ecol. 2014 Apr;23(8):2060-71. doi: 10.1111/mec.12698. Epub 2014 Mar 24.

PMID:
24661631
40.

Holarctic genetic structure and range dynamics in the woolly mammoth.

Palkopoulou E, Dalén L, Lister AM, Vartanyan S, Sablin M, Sher A, Edmark VN, Brandström MD, Germonpré M, Barnes I, Thomas JA.

Proc Biol Sci. 2013 Sep 11;280(1770):20131910. doi: 10.1098/rspb.2013.1910. Print 2013 Nov 7.

41.

Variable temperature effects of Open Top Chambers at polar and alpine sites explained by irradiance and snow depth.

Bokhorst S, Huiskes A, Aerts R, Convey P, Cooper EJ, Dalen L, Erschbamer B, Gudmundsson J, Hofgaard A, Hollister RD, Johnstone J, Jónsdóttir IS, Lebouvier M, Van de Vijver B, Wahren CH, Dorrepaal E.

Glob Chang Biol. 2013 Jan;19(1):64-74. doi: 10.1111/gcb.12028. Epub 2012 Oct 18.

PMID:
23504721
42.

Serial population extinctions in a small mammal indicate Late Pleistocene ecosystem instability.

Brace S, Palkopoulou E, Dalén L, Lister AM, Miller R, Otte M, Germonpré M, Blockley SP, Stewart JR, Barnes I.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20532-6. doi: 10.1073/pnas.1213322109. Epub 2012 Nov 26.

43.

The impact of past climate change on genetic variation and population connectivity in the Icelandic arctic fox.

Mellows A, Barnett R, Dalén L, Sandoval-Castellanos E, Linderholm A, McGovern TH, Church MJ, Larson G.

Proc Biol Sci. 2012 Nov 22;279(1747):4568-73. doi: 10.1098/rspb.2012.1796. Epub 2012 Sep 12.

44.

Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation.

Nyström V, Humphrey J, Skoglund P, McKeown NJ, Vartanyan S, Shaw PW, Lidén K, Jakobsson M, Barnes I, Angerbjörn A, Lister A, Dalén L.

Mol Ecol. 2012 Jul;21(14):3391-402. doi: 10.1111/j.1365-294X.2012.05525.x. Epub 2012 Mar 23.

PMID:
22443459
45.

Partial genetic turnover in neandertals: continuity in the East and population replacement in the West.

Dalén L, Orlando L, Shapiro B, Brandström-Durling M, Quam R, Gilbert MT, Díez Fernández-Lomana JC, Willerslev E, Arsuaga JL, Götherström A.

Mol Biol Evol. 2012 Aug;29(8):1893-7. doi: 10.1093/molbev/mss074. Epub 2012 Feb 23.

PMID:
22362080
46.

Kin encounter rate and inbreeding avoidance in canids.

Geffen E, Kam M, Hefner R, Hersteinsson P, Angerbjörn A, Dalèn L, Fuglei E, Norèn K, Adams JR, Vucetich J, Meier TJ, Mech LD, Vonholdt BM, Stahler DR, Wayne RK.

Mol Ecol. 2011 Dec;20(24):5348-58. doi: 10.1111/j.1365-294X.2011.05358.x. Epub 2011 Nov 11.

PMID:
22077191
47.

50,000 years of genetic uniformity in the critically endangered Iberian lynx.

Rodríguez R, Ramírez O, Valdiosera CE, García N, Alda F, Madurell-Malapeira J, Marmi J, Doadrio I, Willerslev E, Götherström A, Arsuaga JL, Thomas MG, Lalueza-Fox C, Dalén L.

Mol Ecol. 2011 Sep;20(18):3785-95. doi: 10.1111/j.1365-294X.2011.05231.x. Epub 2011 Aug 22.

PMID:
21864323
48.

Population structure in relation to host-plant ecology and Wolbachia infestation in the comma butterfly.

Kodandaramaiah U, Weingartner E, Janz N, Dalén L, Nylin S.

J Evol Biol. 2011 Oct;24(10):2173-85. doi: 10.1111/j.1420-9101.2011.02352.x. Epub 2011 Jul 11.

49.

Temporal genetic change in the last remaining population of woolly mammoth.

Nyström V, Dalén L, Vartanyan S, Lidén K, Ryman N, Angerbjörn A.

Proc Biol Sci. 2010 Aug 7;277(1692):2331-7. doi: 10.1098/rspb.2010.0301. Epub 2010 Mar 31.

50.

Convergent evolution, habitat shifts and variable diversification rates in the ovenbird-woodcreeper family (Furnariidae).

Irestedt M, Fjeldså J, Dalén L, Ericson PG.

BMC Evol Biol. 2009 Nov 21;9:268. doi: 10.1186/1471-2148-9-268.

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