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DNA methylation and cis-regulation of gene expression by prostate cancer risk SNPs.

Dai JY, Wang X, Wang B, Sun W, Jordahl KM, Kolb S, Nyame YA, Wright JL, Ostrander EA, Feng Z, Stanford JL.

PLoS Genet. 2020 Mar 30;16(3):e1008667. doi: 10.1371/journal.pgen.1008667. [Epub ahead of print]


Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars.

Shi W, Zhao SL, Liu K, Sun YB, Ni ZB, Zhang GY, Tang HS, Zhu JW, Wan BJ, Sun HQ, Dai JY, Sun MF, Yan GH, Wang AM, Zhu GY.

BMC Genomics. 2020 Mar 19;21(1):245. doi: 10.1186/s12864-020-6645-6.


Benchmarking the effective one-component plasma model for warm dense neon and krypton within quantum molecular dynamics simulation.

Wang ZQ, Tang J, Hou Y, Chen QF, Chen XR, Dai JY, Meng XJ, Gu YJ, Liu L, Li GJ, Lan YS, Li ZG.

Phys Rev E. 2020 Feb;101(2-1):023302. doi: 10.1103/PhysRevE.101.023302.


Copy number alterations are associated with metastatic-lethal progression in prostate cancer.

Wang X, Grasso CS, Jordahl KM, Kolb S, Nyame YA, Wright JL, Ostrander EA, Troyer DA, Lance R, Feng Z, Dai JY, Stanford JL.

Prostate Cancer Prostatic Dis. 2020 Feb 18. doi: 10.1038/s41391-020-0212-8. [Epub ahead of print]


Small molecule inhibitor of TAK1 ameliorates rat cartilaginous endplate degeneration induced by oxidative stress in vitro and in vivo.

Tang P, Chen WX, Gao HL, Dai JY, Gu Y, Xie ZA, Li XF, Fan SW, Jiang XS, Lu Q, Hu ZJ.

Free Radic Biol Med. 2020 Feb 20;148:140-150. doi: 10.1016/j.freeradbiomed.2020.01.002. Epub 2020 Jan 3. No abstract available.


Thickness-dependent magnetotransport properties in 1T VSe2 single crystals prepared by chemical vapor deposition.

Xue Y, Zhang Y, Wang H, Lin S, Li Y, Dai JY, Lau SP.

Nanotechnology. 2020 Apr 3;31(14):145712. doi: 10.1088/1361-6528/ab6478. Epub 2019 Dec 20.


Thyroid metastasis from chondrosarcoma.

Wu ZH, Dai JY, Shi JN, Fang MY, Cao J.

Medicine (Baltimore). 2019 Nov;98(47):e18043. doi: 10.1097/MD.0000000000018043. Review.


Epidural Spinal Cord Stimulation Promotes Motor Functional Recovery by Enhancing Oligodendrocyte Survival and Differentiation and by Protecting Myelin after Spinal Cord Injury in Rats.

Li G, Fan ZK, Gu GF, Jia ZQ, Zhang QQ, Dai JY, He SS.

Neurosci Bull. 2019 Nov 16. doi: 10.1007/s12264-019-00442-0. [Epub ahead of print]


Solid-state Co-cultivation of Bacillus subtilis, Bacillus mucilaginosus, and Paecilomyces lilacinus Using Tobacco Waste Residue.

Dai JY, Yang Y, Dong YS, Xiu ZL.

Appl Biochem Biotechnol. 2020 Mar;190(3):1092-1105. doi: 10.1007/s12010-019-03146-3. Epub 2019 Nov 7.


Breaking Reciprocity with Space-Time-Coding Digital Metasurfaces.

Zhang L, Chen XQ, Shao RW, Dai JY, Cheng Q, Castaldi G, Galdi V, Cui TJ.

Adv Mater. 2019 Oct;31(41):e1904069. doi: 10.1002/adma.201904069. Epub 2019 Aug 16.


A four-gene transcript score to predict metastatic-lethal progression in men treated for localized prostate cancer: Development and validation studies.

Cheng A, Zhao S, FitzGerald LM, Wright JL, Kolb S, Karnes RJ, Jenkins RB, Davicioni E, Ostrander EA, Feng Z, Fan JB, Dai JY, Stanford JL.

Prostate. 2019 Oct;79(14):1589-1596. doi: 10.1002/pros.23882. Epub 2019 Aug 2.


Modulating the Electrical Transport in the Two-Dimensional Electron Gas at LaAlO_{3}/SrTiO_{3} Heterostructures by Interfacial Flexoelectricity.

Zhang F, Lv P, Zhang Y, Huang S, Wong CM, Yau HM, Chen X, Wen Z, Jiang X, Zeng C, Hong J, Dai JY.

Phys Rev Lett. 2019 Jun 28;122(25):257601. doi: 10.1103/PhysRevLett.122.257601.


Interactive decision support for esophageal adenocarcinoma screening and surveillance.

Vaughan TL, Onstad L, Dai JY.

BMC Gastroenterol. 2019 Jun 27;19(1):109. doi: 10.1186/s12876-019-1022-0.


Magnetotransport Properties of Layered Topological Material ZrTe2 Thin Film.

Wang H, Chan CH, Suen CH, Lau SP, Dai JY.

ACS Nano. 2019 May 28;13(5):6008-6016. doi: 10.1021/acsnano.9b02196. Epub 2019 Apr 25.


[Effects of Tyrosine Kinase Inhibitors on the Th1 and Treg Cells of CML Patients].

Dai JY, Yang X, Wei Q, Li H, Huang XB, Wang XD.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2019 Feb;27(1):25-32. doi: 10.7534/j.issn.1009-2137.2019.01.005. Chinese.


Case-only Methods Identified Genetic Loci Predicting a Subgroup of Men with Reduced Risk of High-grade Prostate Cancer by Finasteride.

Dai JY, LeBlanc M, Goodman PJ, Lucia MS, Thompson IM, Tangen CM.

Cancer Prev Res (Phila). 2019 Feb;12(2):113-120. doi: 10.1158/1940-6207.CAPR-18-0284. Epub 2018 Dec 11.


Independent control of harmonic amplitudes and phases via a time-domain digital coding metasurface.

Dai JY, Zhao J, Cheng Q, Cui TJ.

Light Sci Appl. 2018 Nov 21;7:90. doi: 10.1038/s41377-018-0092-z. eCollection 2018.


Mendelian randomization analysis of C-reactive protein on colorectal cancer risk.

Wang X, Dai JY, Albanes D, Arndt V, Berndt SI, Bézieau S, Brenner H, Buchanan DD, Butterbach K, Caan B, Casey G, Campbell PT, Chan AT, Chen Z, Chang-Claude J, Cotterchio M, Easton DF, Giles GG, Giovannucci E, Grady WM, Hoffmeister M, Hopper JL, Hsu L, Jenkins MA, Joshi AD, Lampe JW, Larsson SC, Lejbkowicz F, Li L, Lindblom A, Le Marchand L, Martin V, Milne RL, Moreno V, Newcomb PA, Offitt K, Ogino S, Pharoah PDP, Pinchev M, Potter JD, Rennert HS, Rennert G, Saliba W, Schafmayer C, Schoen RE, Schrotz-King P, Slattery ML, Song M, Stegmaier C, Weinstein SJ, Wolk A, Woods MO, Wu AH, Gruber SB, Peters U, White E.

Int J Epidemiol. 2019 Jun 1;48(3):767-780. doi: 10.1093/ije/dyy244.


Vigorous Physical Activity Is Associated with Lower Risk of Metastatic-Lethal Progression in Prostate Cancer and Hypomethylation in the CRACR2A Gene.

Dai JY, Wang B, Wang X, Cheng A, Kolb S, Stanford JL, Wright JL.

Cancer Epidemiol Biomarkers Prev. 2019 Feb;28(2):258-264. doi: 10.1158/1055-9965.EPI-18-0622. Epub 2018 Nov 21.


Discovery of log-periodic oscillations in ultraquantum topological materials.

Wang H, Liu H, Li Y, Liu Y, Wang J, Liu J, Dai JY, Wang Y, Li L, Yan J, Mandrus D, Xie XC, Wang J.

Sci Adv. 2018 Nov 2;4(11):eaau5096. doi: 10.1126/sciadv.aau5096. eCollection 2018 Nov.


Whole-genome sequencing of esophageal adenocarcinoma in Chinese patients reveals distinct mutational signatures and genomic alterations.

Dai JY, Wang X, Buas MF, Zhang C, Ma J, Wei B, Li Y, Zhao B, Hyun TS, Chen X, Loeb KR, Odze R, Yao L, Sun X, Self S, Vaughan TL, Guo Y.

Commun Biol. 2018 Oct 24;1:174. doi: 10.1038/s42003-018-0182-8. eCollection 2018.


Space-time-coding digital metasurfaces.

Zhang L, Chen XQ, Liu S, Zhang Q, Zhao J, Dai JY, Bai GD, Wan X, Cheng Q, Castaldi G, Galdi V, Cui TJ.

Nat Commun. 2018 Oct 18;9(1):4334. doi: 10.1038/s41467-018-06802-0.


Diagnostics for Pleiotropy in Mendelian Randomization Studies: Global and Individual Tests for Direct Effects.

Dai JY, Peters U, Wang X, Kocarnik J, Chang-Claude J, Slattery ML, Chan A, Lemire M, Berndt SI, Casey G, Song M, Jenkins MA, Brenner H, Thrift AP, White E, Hsu L.

Am J Epidemiol. 2018 Dec 1;187(12):2672-2680. doi: 10.1093/aje/kwy177.


Quantum molecular dynamics study on the proton exchange, ionic structures, and transport properties of warm dense hydrogen-deuterium mixtures.

Liu L, Li ZG, Dai JY, Chen QF, Chen XR.

Phys Rev E. 2018 Jun;97(6-1):063204. doi: 10.1103/PhysRevE.97.063204.


A five-CpG DNA methylation score to predict metastatic-lethal outcomes in men treated with radical prostatectomy for localized prostate cancer.

Zhao S, Leonardson A, Geybels MS, McDaniel AS, Yu M, Kolb S, Zong H, Carter K, Siddiqui J, Cheng A, Wright JL, Pritchard CC, Lance R, Troyer D, Fan JB, Ostrander EA, Dai JY, Tomlins SA, Feng Z, Stanford JL.

Prostate. 2018 Jun 28. doi: 10.1002/pros.23667. [Epub ahead of print]


Identifying disease-associated copy number variations by a doubly penalized regression model.

Cheng Y, Dai JY, Wang X, Kooperberg C.

Biometrics. 2018 Dec;74(4):1341-1350. doi: 10.1111/biom.12920. Epub 2018 Jun 12.


Mendelian randomisation study of age at menarche and age at menopause and the risk of colorectal cancer.

Neumeyer S, Banbury BL, Arndt V, Berndt SI, Bezieau S, Bien SA, Buchanan DD, Butterbach K, Caan BJ, Campbell PT, Casey G, Chan AT, Chanock SJ, Dai JY, Gallinger S, Giovannucci EL, Giles GG, Grady WM, Hampe J, Hoffmeister M, Hopper JL, Hsu L, Jenkins MA, Joshi A, Larsson SC, Le Marchand L, Lindblom A, Moreno V, Lemire M, Li L, Lin Y, Offit K, Newcomb PA, Pharaoh PD, Potter JD, Qi L, Rennert G, Schafmayer C, Schoen RE, Slattery ML, Song M, Ulrich CM, Win AK, White E, Wolk A, Woods MO, Wu AH, Gruber SB, Brenner H, Peters U, Chang-Claude J.

Br J Cancer. 2018 Jun;118(12):1639-1647. doi: 10.1038/s41416-018-0108-8. Epub 2018 May 24.


Pharmacokinetics and Pharmacodynamics of Tenofovir Reduced-Glycerin 1% Gel in the Rectal and Vaginal Compartments in Women: A Cross-Compartmental Study With Directly Observed Dosing.

Justman JE, Nair GL, Hendrix CW, Piper JM, Marzinke MA, Dai JY, Pan Z, Galaska B, Levy L, Schwartz JL, Balar B, Kunjara Na Ayudhya RP, Mushamiri I, McGowan I, Dezzutti CS; MTN-014 Study Team.

J Acquir Immune Defic Syndr. 2018 Jun 1;78(2):175-182. doi: 10.1097/QAI.0000000000001655.


Quantification of Multiple Tumor Clones Using Gene Array and Sequencing Data.

Cheng Y, Dai JY, Paulson TG, Wang X, Li X, Reid BJ, Kooperberg C.

Ann Appl Stat. 2017 Jun;11(2):967-991. doi: 10.1214/17-AOAS1026. Epub 2017 Jul 20.


Case-only approach to identifying markers predicting treatment effects on the relative risk scale.

Dai JY, Liang CJ, LeBlanc M, Prentice RL, Janes H.

Biometrics. 2018 Jun;74(2):753-763. doi: 10.1111/biom.12789. Epub 2017 Sep 28.


Editorial: Mendelian Randomization Analysis Identifies Body Mass Index and Fasting Insulin as Potential Causal Risk Factors for Pancreatic Cancer Risk.

Tsilidis KK, Dai JY, Peters U.

J Natl Cancer Inst. 2017 Sep 1;109(9). doi: 10.1093/jnci/djx043. No abstract available.


Acceptability of and Adherence to an Antiretroviral-Based Vaginal Microbicide among Pregnant Women in the United States.

Montgomery ET, Noguchi LM, Dai JY, Pan J, Biggio J, Hendrix C, Isaacs K, Watts DH, Schwartz JL, Piper J, Beigi R.

AIDS Behav. 2018 Feb;22(2):402-411. doi: 10.1007/s10461-017-1811-9.


Self-Powered Ultrabroadband Photodetector Monolithically Integrated on a PMN-PT Ferroelectric Single Crystal.

Fang H, Xu C, Ding J, Li Q, Sun JL, Dai JY, Ren TL, Yan Q.

ACS Appl Mater Interfaces. 2016 Dec 7;8(48):32934-32939. Epub 2016 Nov 23.


Sugaring-out extraction of acetoin from fermentation broth by coupling with fermentation.

Dai JY, Ma LH, Wang ZF, Guan WT, Xiu ZL.

Bioprocess Biosyst Eng. 2017 Mar;40(3):423-429. doi: 10.1007/s00449-016-1710-x. Epub 2016 Nov 23.


A Woman with Psychogenic Non-epileptic Seizures and Pelvic Mass.

Xu TD, Xu SY, Dai JY.

Chin Med Sci J. 2016 Sep 20;31(3):203-206. No abstract available.


[Effect of Sunitinib therapy on immune function of patients with advanced renal cell carcinoma].

Xian P, Li Y, Zhou H, Luo H, Liu N, Dai JY.

Zhonghua Wai Ke Za Zhi. 2016 Oct 1;54(10):741-745. doi: 10.3760/cma.j.issn.0529-5815.2016.10.004. Chinese.


A randomized safety and pharmacokinetic trial of daily tenofovir 1% gel in term and near-term pregnancy.

Beigi RH, Noguchi LM, Montgomery E, Biggio J, Hendrix CW, Marzinke MA, Dai JY, Pan J, Kunjara Na Ayudhya R, Schwartz JL, Isaacs K, Piper JM, Watts DH.

J Int AIDS Soc. 2016 Sep 21;19(1):20990. doi: 10.7448/IAS.19.1.20990. eCollection 2016.


Constrained Score Statistics Identify Genetic Variants Interacting with Multiple Risk Factors in Barrett's Esophagus.

Dai JY, Tapsoba Jde D, Buas MF; BEACON Consortium, Risch HA, Vaughan TL.

Am J Hum Genet. 2016 Aug 4;99(2):352-65. doi: 10.1016/j.ajhg.2016.06.018.


Total flavonoid aglycones extract in Radix scutellariae inhibits lung carcinoma and lung metastasis by affecting cell cycle and DNA synthesis.

Wang Y, Cao HJ, Sun SJ, Dai JY, Fang JW, Li QH, Yan C, Mao WW, Zhang YY.

J Ethnopharmacol. 2016 Dec 24;194:269-279. doi: 10.1016/j.jep.2016.07.052. Epub 2016 Jul 19.


Detectable Tenofovir Levels in Breast-Feeding Infants of Mothers Exposed to Topical Tenofovir.

Noguchi LM, Montgomery ET, Biggio JR, Hendrix CW, Bogen DL, Hillier SL, Dai JY, Piper JM, Marzinke MA, Dezzutti CS, Isaacs SK, Schwartz JL, Watts DH, Beigi RH.

Antimicrob Agents Chemother. 2016 Aug 22;60(9):5616-9. doi: 10.1128/AAC.00645-16. Print 2016 Sep.


Anodic aluminum oxide-epoxy composite acoustic matching layers for ultrasonic transducer application.

Fang HJ, Chen Y, Wong CM, Qiu WB, Chan HL, Dai JY, Li Q, Yan QF.

Ultrasonics. 2016 Aug;70:29-33. doi: 10.1016/j.ultras.2016.04.003. Epub 2016 Apr 4.


Bone Mineral Density Changes Among Young, Healthy African Women Receiving Oral Tenofovir for HIV Preexposure Prophylaxis.

Mirembe BG, Kelly CW, Mgodi N, Greenspan S, Dai JY, Mayo A, Piper J, Akello CA, Kiweewa FM, Magure T, Nakabiito C, Marrazzo JM, Chirenje ZM, Riddler SA; MTN-003B Protocol Team.

J Acquir Immune Defic Syndr. 2016 Mar 1;71(3):287-94. doi: 10.1097/QAI.0000000000000858.


[Preliminary Study on the Structural Characteristics of Residue from Rice Straw Burning in Field].

Hu LC, Chen LN, Yin Y, Huang ZQ, Dai JY.

Guang Pu Xue Yu Guang Pu Fen Xi. 2015 Jul;35(7):1844-7. Chinese.


Infrared light gated MoS₂ field effect transistor.

Fang H, Lin Z, Wang X, Tang CY, Chen Y, Zhang F, Chai Y, Li Q, Yan Q, Chan HL, Dai JY.

Opt Express. 2015 Dec 14;23(25):31908-14. doi: 10.1364/OE.23.031908.


Group association test using a hidden Markov model.

Cheng Y, Dai JY, Kooperberg C.

Biostatistics. 2016 Apr;17(2):221-34. doi: 10.1093/biostatistics/kxv035. Epub 2015 Sep 28.


A newly identified susceptibility locus near FOXP1 modifies the association of gastroesophageal reflux with Barrett's esophagus.

Dai JY, de Dieu Tapsoba J, Buas MF, Onstad LE, Levine DM, Risch HA, Chow WH, Bernstein L, Ye W, Lagergren J, Bird NC, Corley DA, Shaheen NJ, Wu AH, Reid BJ, Hardie LJ, Whiteman DC, Vaughan TL.

Cancer Epidemiol Biomarkers Prev. 2015 Nov;24(11):1739-47. doi: 10.1158/1055-9965.EPI-15-0507. Epub 2015 Sep 16.


Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma.

Wang X, Li X, Cheng Y, Sun X, Sun X, Self S, Kooperberg C, Dai JY.

Hum Genomics. 2015 Sep 15;9:22. doi: 10.1186/s40246-015-0044-0.


Augmented case-only designs for randomized clinical trials with failure time endpoints.

Dai JY, Zhang XC, Wang CY, Kooperberg C.

Biometrics. 2016 Mar;72(1):30-8. doi: 10.1111/biom.12392. Epub 2015 Sep 8.

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