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Items: 1 to 50 of 94

1.

The Effect of Population Bottleneck Size and Selective Regime on Genetic Diversity and Evolvability in Bacteria.

Wein T, Dagan T.

Genome Biol Evol. 2019 Nov 1;11(11):3283-3290. doi: 10.1093/gbe/evz243.

PMID:
31688900
2.

Catheter ablation of left-sided accessory pathways in small children.

Fogelman R, Birk E, Dagan T, Fogelman M, Einbinder T, Bruckheimer E, Swissa M.

J Arrhythm. 2019 Aug 2;35(5):742-747. doi: 10.1002/joa3.12219. eCollection 2019 Oct.

3.

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms.

Rausch P, Rühlemann M, Hermes BM, Doms S, Dagan T, Dierking K, Domin H, Fraune S, von Frieling J, Hentschel U, Heinsen FA, Höppner M, Jahn MT, Jaspers C, Kissoyan KAB, Langfeldt D, Rehman A, Reusch TBH, Roeder T, Schmitz RA, Schulenburg H, Soluch R, Sommer F, Stukenbrock E, Weiland-Bräuer N, Rosenstiel P, Franke A, Bosch T, Baines JF.

Microbiome. 2019 Sep 14;7(1):133. doi: 10.1186/s40168-019-0743-1.

4.

Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated.

Romero Picazo D, Dagan T, Ansorge R, Petersen JM, Dubilier N, Kupczok A.

ISME J. 2019 Dec;13(12):2954-2968. doi: 10.1038/s41396-019-0475-z. Epub 2019 Aug 8.

5.

Rates of Molecular Evolution in a Marine Synechococcus Phage Lineage.

Kupczok A, Dagan T.

Viruses. 2019 Aug 6;11(8). pii: E720. doi: 10.3390/v11080720.

6.

Interactions and Coadaptation in Plant Metaorganisms.

Hassani MA, Özkurt E, Seybold H, Dagan T, Stukenbrock EH.

Annu Rev Phytopathol. 2019 Aug 25;57:483-503. doi: 10.1146/annurev-phyto-082718-100008. Epub 2019 Jul 26.

PMID:
31348865
7.

Currency, Exchange, and Inheritance in the Evolution of Symbiosis.

Wein T, Romero Picazo D, Blow F, Woehle C, Jami E, Reusch TBH, Martin WF, Dagan T.

Trends Microbiol. 2019 Oct;27(10):836-849. doi: 10.1016/j.tim.2019.05.010. Epub 2019 Jun 27. Review.

8.

Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance.

Wein T, Hülter NF, Mizrahi I, Dagan T.

Nat Commun. 2019 Jun 13;10(1):2595. doi: 10.1038/s41467-019-10600-7.

9.

Evolthon: A community endeavor to evolve lab evolution.

Kaminski Strauss S, Schirman D, Jona G, Brooks AN, Kunjapur AM, Nguyen Ba AN, Flint A, Solt A, Mershin A, Dixit A, Yona AH, Csörgő B, Busby BP, Hennig BP, Pál C, Schraivogel D, Schultz D, Wernick DG, Agashe D, Levi D, Zabezhinsky D, Russ D, Sass E, Tamar E, Herz E, Levy ED, Church GM, Yelin I, Nachman I, Gerst JE, Georgeson JM, Adamala KP, Steinmetz LM, Rübsam M, Ralser M, Klutstein M, Desai MM, Walunjkar N, Yin N, Aharon Hefetz N, Jakimo N, Snitser O, Adini O, Kumar P, Soo Hoo Smith R, Zeidan R, Hazan R, Rak R, Kishony R, Johnson S, Nouriel S, Vonesch SC, Foster S, Dagan T, Wein T, Karydis T, Wannier TM, Stiles T, Olin-Sandoval V, Mueller WF, Bar-On YM, Dahan O, Pilpel Y.

PLoS Biol. 2019 Mar 29;17(3):e3000182. doi: 10.1371/journal.pbio.3000182. eCollection 2019 Mar.

10.

Metabolic preference of nitrate over oxygen as an electron acceptor in foraminifera from the Peruvian oxygen minimum zone.

Glock N, Roy AS, Romero D, Wein T, Weissenbach J, Revsbech NP, Høgslund S, Clemens D, Sommer S, Dagan T.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):2860-2865. doi: 10.1073/pnas.1813887116. Epub 2019 Feb 6.

11.

Segregational Drift and the Interplay between Plasmid Copy Number and Evolvability.

Ilhan J, Kupczok A, Woehle C, Wein T, Hülter NF, Rosenstiel P, Landan G, Mizrahi I, Dagan T.

Mol Biol Evol. 2019 Mar 1;36(3):472-486. doi: 10.1093/molbev/msy225.

12.

CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes.

Svetlitsky D, Dagan T, Chalifa-Caspi V, Ziv-Ukelson M.

Bioinformatics. 2019 May 15;35(10):1634-1643. doi: 10.1093/bioinformatics/bty861.

PMID:
30321308
13.

A Novel Eukaryotic Denitrification Pathway in Foraminifera.

Woehle C, Roy AS, Glock N, Wein T, Weissenbach J, Rosenstiel P, Hiebenthal C, Michels J, Schönfeld J, Dagan T.

Curr Biol. 2018 Aug 20;28(16):2536-2543.e5. doi: 10.1016/j.cub.2018.06.027. Epub 2018 Aug 2.

14.

Recombination Signal in Mycobacterium tuberculosis Stems from Reference-guided Assemblies and Alignment Artefacts.

Godfroid M, Dagan T, Kupczok A.

Genome Biol Evol. 2018 Aug 1;10(8):1920-1926. doi: 10.1093/gbe/evy143.

15.

Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades.

Kupczok A, Neve H, Huang KD, Hoeppner MP, Heller KJ, Franz CMAP, Dagan T.

Mol Biol Evol. 2018 May 1;35(5):1147-1159. doi: 10.1093/molbev/msy027.

16.

Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?

Bang C, Dagan T, Deines P, Dubilier N, Duschl WJ, Fraune S, Hentschel U, Hirt H, Hülter N, Lachnit T, Picazo D, Pita L, Pogoreutz C, Rädecker N, Saad MM, Schmitz RA, Schulenburg H, Voolstra CR, Weiland-Bräuer N, Ziegler M, Bosch TCG.

Zoology (Jena). 2018 Apr;127:1-19. doi: 10.1016/j.zool.2018.02.004. Epub 2018 Feb 15. Review.

17.

Carrying Capacity and Colonization Dynamics of Curvibacter in the Hydra Host Habitat.

Wein T, Dagan T, Fraune S, Bosch TCG, Reusch TBH, Hülter NF.

Front Microbiol. 2018 Mar 14;9:443. doi: 10.3389/fmicb.2018.00443. eCollection 2018.

18.

Phylogenetic rooting using minimal ancestor deviation.

Tria FDK, Landan G, Dagan T.

Nat Ecol Evol. 2017 Jun 19;1:193. doi: 10.1038/s41559-017-0193.

PMID:
29388565
19.

Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria.

Koch R, Kupczok A, Stucken K, Ilhan J, Hammerschmidt K, Dagan T.

BMC Evol Biol. 2017 Aug 31;17(1):209. doi: 10.1186/s12862-017-1053-5.

20.

An evolutionary perspective on plasmid lifestyle modes.

Hülter N, Ilhan J, Wein T, Kadibalban AS, Hammerschmidt K, Dagan T.

Curr Opin Microbiol. 2017 Aug;38:74-80. doi: 10.1016/j.mib.2017.05.001. Epub 2017 May 21. Review.

21.

Expansion of the redox-sensitive proteome coincides with the plastid endosymbiosis.

Woehle C, Dagan T, Landan G, Vardi A, Rosenwasser S.

Nat Plants. 2017 May 15;3:17066. doi: 10.1038/nplants.2017.66.

22.

Limited fluoroscopy catheter ablation of accessory pathways in children.

Swissa M, Birk E, Dagan T, Abby Naimer S, Fogelman M, Einbinder T, Bruckheimer E, Fogelman R.

J Cardiol. 2017 Oct;70(4):382-386. doi: 10.1016/j.jjcc.2016.12.018. Epub 2017 Mar 6.

23.

Radiofrequency catheter ablation of atrioventricular node reentrant tachycardia in children with limited fluoroscopy.

Swissa M, Birk E, Dagan T, Naimer SA, Fogelman M, Einbinder T, Bruckheimer E, Fogelman R.

Int J Cardiol. 2017 Jun 1;236:198-202. doi: 10.1016/j.ijcard.2017.01.128. Epub 2017 Jan 31.

PMID:
28202257
24.

Evolution of Chaperonin Gene Duplication in Stigonematalean Cyanobacteria (Subsection V).

Weissenbach J, Ilhan J, Bogumil D, Hülter N, Stucken K, Dagan T.

Genome Biol Evol. 2017 Jan 1;9(1):241-252. doi: 10.1093/gbe/evw287.

25.

Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction.

Popa O, Landan G, Dagan T.

ISME J. 2017 Feb;11(2):543-554. doi: 10.1038/ismej.2016.116. Epub 2016 Sep 20.

26.

Reply to Letter Regarding "Amplatzer Vascular Plugs Versus Coils for Embolization of Pulmonary Arteriovenous Malformations in Patients with Hereditary Hemorrhagic Telangiectasia".

Tau N, Atar E, Mei-Zahav M, Bachar GN, Dagan T, Birk E, Bruckheimer E.

Cardiovasc Intervent Radiol. 2016 Oct;39(10):1520. doi: 10.1007/s00270-016-1448-5. Epub 2016 Aug 9. No abstract available.

PMID:
27506772
27.

Pulmonary hypertension specific treatment in infants with bronchopulmonary dysplasia.

Kadmon G, Schiller O, Dagan T, Bruckheimer E, Birk E, Schonfeld T.

Pediatr Pulmonol. 2017 Jan;52(1):77-83. doi: 10.1002/ppul.23508. Epub 2016 Jun 22.

PMID:
27333438
28.

Computer-generated real-time digital holography: first time use in clinical medical imaging.

Bruckheimer E, Rotschild C, Dagan T, Amir G, Kaufman A, Gelman S, Birk E.

Eur Heart J Cardiovasc Imaging. 2016 Aug;17(8):845-9. doi: 10.1093/ehjci/jew087. Epub 2016 Jun 9.

PMID:
27283456
29.

DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes.

Kadibalban AS, Bogumil D, Landan G, Dagan T.

Genome Biol Evol. 2016 Jun 3;8(5):1590-9. doi: 10.1093/gbe/evw102.

30.

Amplatzer Vascular Plugs Versus Coils for Embolization of Pulmonary Arteriovenous Malformations in Patients with Hereditary Hemorrhagic Telangiectasia.

Tau N, Atar E, Mei-Zahav M, Bachar GN, Dagan T, Birk E, Bruckheimer E.

Cardiovasc Intervent Radiol. 2016 Aug;39(8):1110-4. doi: 10.1007/s00270-016-1357-7. Epub 2016 May 5.

PMID:
27150804
31.

Variable phenotypic presentation of a novel FOXF1 missense mutation in a single family.

Reiter J, Szafranski P, Breuer O, Perles Z, Dagan T, Stankiewicz P, Kerem E.

Pediatr Pulmonol. 2016 Sep;51(9):921-7. doi: 10.1002/ppul.23425. Epub 2016 May 4.

PMID:
27145217
32.

The Contribution of Genetic Recombination to CRISPR Array Evolution.

Kupczok A, Landan G, Dagan T.

Genome Biol Evol. 2015 Jun 16;7(7):1925-39. doi: 10.1093/gbe/evv113.

33.

Cryotherapy ablation of parahisian accessory pathways in children.

Swissa M, Birk E, Dagan T, Fogelman M, Einbinder T, Bruckheimer E, Goldenberg I, Klempfner R, Kirsh JA, Fogelman R.

Heart Rhythm. 2015 May;12(5):917-25. doi: 10.1016/j.hrthm.2015.01.042. Epub 2015 Jan 29.

PMID:
25640635
34.

SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report.

Dagan T, Bapteste E, McInerney JO, Martin WF.

Genome Biol Evol. 2014 Aug 12;6(9):2206-9. doi: 10.1093/gbe/evu173. No abstract available.

35.

The Amplatzer Duct Occluder II Additional Sizes device for transcatheter PDA closure: initial experience.

Bruckheimer E, Godfrey M, Dagan T, Levinzon M, Amir G, Birk E.

Catheter Cardiovasc Interv. 2014 Jun 1;83(7):1097-101. doi: 10.1002/ccd.25445. Epub 2014 Mar 4.

PMID:
24532416
36.

Cyanobacterial defense mechanisms against foreign DNA transfer and their impact on genetic engineering.

Stucken K, Koch R, Dagan T.

Biol Res. 2013;46(4):373-82. doi: 10.4067/S0716-97602013000400009. Review.

37.

Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis.

Bogumil D, Alvarez-Ponce D, Landan G, McInerney JO, Dagan T.

Mol Biol Evol. 2014 Feb;31(2):410-8. doi: 10.1093/molbev/mst212. Epub 2013 Nov 4.

38.

Staged transcatheter treatment of portal hypoplasia and congenital portosystemic shunts in children.

Bruckheimer E, Dagan T, Atar E, Schwartz M, Kachko L, Superina R, Amir G, Shapiro R, Birk E.

Cardiovasc Intervent Radiol. 2013 Dec;36(6):1580-1585. doi: 10.1007/s00270-013-0581-7. Epub 2013 Feb 22.

PMID:
23435744
39.

Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids.

Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, Tandeau de Marsac N, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, Pühler A, Martin WF.

Genome Biol Evol. 2013;5(1):31-44. doi: 10.1093/gbe/evs117.

40.

Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea.

Nelson-Sathi S, Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20537-42. doi: 10.1073/pnas.1209119109. Epub 2012 Nov 26.

41.

Cumulative impact of chaperone-mediated folding on genome evolution.

Bogumil D, Dagan T.

Biochemistry. 2012 Dec 18;51(50):9941-53. doi: 10.1021/bi3013643. Epub 2012 Dec 10. Review.

PMID:
23167595
42.

The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.

Heinz E, Williams TA, Nakjang S, Noël CJ, Swan DC, Goldberg AV, Harris SR, Weinmaier T, Markert S, Becher D, Bernhardt J, Dagan T, Hacker C, Lucocq JM, Schweder T, Rattei T, Hall N, Hirt RP, Embley TM.

PLoS Pathog. 2012;8(10):e1002979. doi: 10.1371/journal.ppat.1002979. Epub 2012 Oct 25.

43.

Plasmodium falciparum-encoded exported hsp70/hsp40 chaperone/co-chaperone complexes within the host erythrocyte.

Külzer S, Charnaud S, Dagan T, Riedel J, Mandal P, Pesce ER, Blatch GL, Crabb BS, Gilson PR, Przyborski JM.

Cell Microbiol. 2012 Nov;14(11):1784-95. doi: 10.1111/j.1462-5822.2012.01840.x. Epub 2012 Aug 24.

PMID:
22925632
44.

Transformation and conjugal transfer of foreign genes into the filamentous multicellular cyanobacteria (subsection V) Fischerella and Chlorogloeopsis.

Stucken K, Ilhan J, Roettger M, Dagan T, Martin WF.

Curr Microbiol. 2012 Nov;65(5):552-60. Epub 2012 Jul 26.

PMID:
22833222
45.

Chaperones divide yeast proteins into classes of expression level and evolutionary rate.

Bogumil D, Landan G, Ilhan J, Dagan T.

Genome Biol Evol. 2012;4(5):618-25. doi: 10.1093/gbe/evs025. Epub 2012 Mar 14.

46.

An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin.

Thiergart T, Landan G, Schenk M, Dagan T, Martin WF.

Genome Biol Evol. 2012;4(4):466-85. doi: 10.1093/gbe/evs018. Epub 2012 Feb 21.

47.

A machine learning approach to identify hydrogenosomal proteins in Trichomonas vaginalis.

Burstein D, Gould SB, Zimorski V, Kloesges T, Kiosse F, Major P, Martin WF, Pupko T, Dagan T.

Eukaryot Cell. 2012 Feb;11(2):217-28. doi: 10.1128/EC.05225-11. Epub 2011 Dec 2.

48.

Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia.

Woehle C, Dagan T, Martin WF, Gould SB.

Genome Biol Evol. 2011;3:1220-30. doi: 10.1093/gbe/evr100. Epub 2011 Sep 28. Erratum in: Genome Biol Evol. 2012 Jan;4(4):617.

49.

Trends and barriers to lateral gene transfer in prokaryotes.

Popa O, Dagan T.

Curr Opin Microbiol. 2011 Oct;14(5):615-23. doi: 10.1016/j.mib.2011.07.027. Epub 2011 Aug 17. Review.

PMID:
21856213
50.

Phylogenomic networks.

Dagan T.

Trends Microbiol. 2011 Oct;19(10):483-91. doi: 10.1016/j.tim.2011.07.001. Epub 2011 Aug 3. Review.

PMID:
21820313

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