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Items: 1 to 50 of 174

1.

Oxygen supersaturation protects coastal marine fauna from ocean warming.

Giomi F, Barausse A, Duarte CM, Booth J, Agusti S, Saderne V, Anton A, Daffonchio D, Fusi M.

Sci Adv. 2019 Sep 4;5(9):eaax1814. doi: 10.1126/sciadv.aax1814. eCollection 2019 Sep.

2.

Developmental stages and gut microenvironments influence gut microbiota dynamics in the invasive beetle Popillia japonica Newman (Coleoptera: Scarabaeidae).

Chouaia B, Goda N, Mazza G, Alali S, Florian F, Gionechetti F, Callegari M, Gonella E, Magoga G, Fusi M, Crotti E, Daffonchio D, Alma A, Paoli F, Roversi PF, Marianelli L, Montagna M.

Environ Microbiol. 2019 Sep 9. doi: 10.1111/1462-2920.14797. [Epub ahead of print]

PMID:
31502415
3.

Acquisition of Extracellular DNA by Acinetobacter baylyi ADP1 in Response to Solar and UV-C254nm Disinfection.

Augsburger N, Mantilla-Calderon D, Daffonchio D, Hong PY.

Environ Sci Technol. 2019 Sep 3;53(17):10312-10319. doi: 10.1021/acs.est.9b01206. Epub 2019 Aug 21.

PMID:
31386349
4.

Prokaryotic and eukaryotic microbial community responses to N and P nutrient addition in oligotrophic Mediterranean coastal waters: Novel insights from DNA metabarcoding and network analysis.

Santi I, Tsiola A, Dimitriou PD, Fodelianakis S, Kasapidis P, Papageorgiou N, Daffonchio D, Pitta P, Karakassis I.

Mar Environ Res. 2019 Jul 10;150:104752. doi: 10.1016/j.marenvres.2019.104752. [Epub ahead of print]

PMID:
31326679
5.

Phenomics and Genomics Reveal Adaptation of Virgibacillus dokdonensis Strain 21D to Its Origin of Isolation, the Seawater-Brine Interface of the Mediterranean Sea Deep Hypersaline Anoxic Basin Discovery.

Zeaiter Z, Marasco R, Booth JM, Prosdocimi EM, Mapelli F, Callegari M, Fusi M, Michoud G, Molinari F, Daffonchio D, Borin S, Crotti E.

Front Microbiol. 2019 Jun 12;10:1304. doi: 10.3389/fmicb.2019.01304. eCollection 2019.

6.

Bacterial endophytes of mangrove propagules elicit early establishment of the natural host and promote growth of cereal crops under salt stress.

Soldan R, Mapelli F, Crotti E, Schnell S, Daffonchio D, Marasco R, Fusi M, Borin S, Cardinale M.

Microbiol Res. 2019 Jun - Aug;223-225:33-43. doi: 10.1016/j.micres.2019.03.008. Epub 2019 Mar 26.

PMID:
31178049
7.

The role of fungi in heterogeneous sediment microbial networks.

Marie Booth J, Fusi M, Marasco R, Michoud G, Fodelianakis S, Merlino G, Daffonchio D.

Sci Rep. 2019 May 17;9(1):7537. doi: 10.1038/s41598-019-43980-3.

8.

Water Disinfection Byproducts Increase Natural Transformation Rates of Environmental DNA in Acinetobacter baylyi ADP1.

Mantilla-Calderon D, Plewa MJ, Michoud G, Fodelianakis S, Daffonchio D, Hong PY.

Environ Sci Technol. 2019 Jun 4;53(11):6520-6528. doi: 10.1021/acs.est.9b00692. Epub 2019 May 13.

PMID:
31050420
9.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
10.

Publisher Correction: Dispersal homogenizes communities via immigration even at low rates in a simplified synthetic bacterial metacommunity.

Fodelianakis S, Lorz A, Valenzuela-Cuevas A, Barozzi A, Booth JM, Daffonchio D.

Nat Commun. 2019 Apr 25;10(1):1924. doi: 10.1038/s41467-019-09885-5.

11.

Dispersal homogenizes communities via immigration even at low rates in a simplified synthetic bacterial metacommunity.

Fodelianakis S, Lorz A, Valenzuela-Cuevas A, Barozzi A, Booth JM, Daffonchio D.

Nat Commun. 2019 Mar 21;10(1):1314. doi: 10.1038/s41467-019-09306-7. Erratum in: Nat Commun. 2019 Apr 25;10(1):1924.

12.

Consistent bacterial selection by date palm root system across heterogeneous desert oasis agroecosystems.

Mosqueira MJ, Marasco R, Fusi M, Michoud G, Merlino G, Cherif A, Daffonchio D.

Sci Rep. 2019 Mar 11;9(1):4033. doi: 10.1038/s41598-019-40551-4.

13.

Fiddler crab bioturbation determines consistent changes in bacterial communities across contrasting environmental conditions.

Booth JM, Fusi M, Marasco R, Mbobo T, Daffonchio D.

Sci Rep. 2019 Mar 6;9(1):3749. doi: 10.1038/s41598-019-40315-0.

14.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

15.

Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host.

Marasco R, Mosqueira MJ, Fusi M, Ramond JB, Merlino G, Booth JM, Maggs-Kölling G, Cowan DA, Daffonchio D.

Microbiome. 2018 Dec 4;6(1):215. doi: 10.1186/s40168-018-0597-y.

16.

Highly divergent Mollicutes symbionts coexist in the scorpion Androctonus australis.

Elmnasri K, Hamdi C, Ettoumi B, Crotti E, Guesmi A, Najjari A, Doudoumis V, Boudabous A, Daffonchio D, Tsiamis G, Cherif A.

J Basic Microbiol. 2018 Oct;58(10):827-835. doi: 10.1002/jobm.201800144. Epub 2018 Jul 18.

PMID:
30019339
17.

Microbial ecology of deep-sea hypersaline anoxic basins.

Merlino G, Barozzi A, Michoud G, Ngugi DK, Daffonchio D.

FEMS Microbiol Ecol. 2018 Jul 1;94(7). doi: 10.1093/femsec/fiy085. Review.

PMID:
29905791
18.

Bacterial polyextremotolerant bioemulsifiers from arid soils improve water retention capacity and humidity uptake in sandy soil.

Raddadi N, Giacomucci L, Marasco R, Daffonchio D, Cherif A, Fava F.

Microb Cell Fact. 2018 May 31;17(1):83. doi: 10.1186/s12934-018-0934-7.

19.

Root bacterial endophytes confer drought resistance and enhance expression and activity of a vacuolar H+ -pumping pyrophosphatase in pepper plants.

Vigani G, Rolli E, Marasco R, Dell'Orto M, Michoud G, Soussi A, Raddadi N, Borin S, Sorlini C, Zocchi G, Daffonchio D.

Environ Microbiol. 2018 May 22. doi: 10.1111/1462-2920.14272. [Epub ahead of print]

PMID:
29786171
20.

The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence.

Mapelli F, Marasco R, Fusi M, Scaglia B, Tsiamis G, Rolli E, Fodelianakis S, Bourtzis K, Ventura S, Tambone F, Adani F, Borin S, Daffonchio D.

ISME J. 2018 May;12(5):1188-1198. doi: 10.1038/s41396-017-0026-4. Epub 2018 Jan 15.

21.

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality.

Marasco R, Rolli E, Fusi M, Michoud G, Daffonchio D.

Microbiome. 2018 Jan 3;6(1):3. doi: 10.1186/s40168-017-0391-2.

22.

Measuring the role of seagrasses in regulating sediment surface elevation.

Potouroglou M, Bull JC, Krauss KW, Kennedy HA, Fusi M, Daffonchio D, Mangora MM, Githaiga MN, Diele K, Huxham M.

Sci Rep. 2017 Sep 20;7(1):11917. doi: 10.1038/s41598-017-12354-y.

23.

Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation.

Vergani L, Mapelli F, Marasco R, Crotti E, Fusi M, Di Guardo A, Armiraglio S, Daffonchio D, Borin S.

Front Microbiol. 2017 Jul 25;8:1385. doi: 10.3389/fmicb.2017.01385. eCollection 2017.

24.

Self-healing capacity of deep-sea ecosystems affected by petroleum hydrocarbons: Understanding microbial oil degradation at hydrocarbon seeps is key to sustainable bioremediation protocols.

Scoma A, Yakimov MM, Daffonchio D, Boon N.

EMBO Rep. 2017 Jun;18(6):868-872. doi: 10.15252/embr.201744090. Epub 2017 May 17. No abstract available.

25.

Biotechnologies for Marine Oil Spill Cleanup: Indissoluble Ties with Microorganisms.

Mapelli F, Scoma A, Michoud G, Aulenta F, Boon N, Borin S, Kalogerakis N, Daffonchio D.

Trends Biotechnol. 2017 Sep;35(9):860-870. doi: 10.1016/j.tibtech.2017.04.003. Epub 2017 May 13. Review.

26.

Hydrocarbonoclastic Alcanivorax Isolates Exhibit Different Physiological and Expression Responses to n-dodecane.

Barbato M, Scoma A, Mapelli F, De Smet R, Banat IM, Daffonchio D, Boon N, Borin S.

Front Microbiol. 2016 Dec 21;7:2056. doi: 10.3389/fmicb.2016.02056. eCollection 2016.

27.

Bacterial diversity shift determined by different diets in the gut of the spotted wing fly Drosophila suzukii is primarily reflected on acetic acid bacteria.

Vacchini V, Gonella E, Crotti E, Prosdocimi EM, Mazzetto F, Chouaia B, Callegari M, Mapelli F, Mandrioli M, Alma A, Daffonchio D.

Environ Microbiol Rep. 2017 Apr;9(2):91-103. doi: 10.1111/1758-2229.12505. Epub 2017 Mar 13.

28.

Ensuring safety in artisanal food microbiology.

Cocolin L, Gobbetti M, Neviani E, Daffonchio D.

Nat Microbiol. 2016 Sep 27;1(10):16171. doi: 10.1038/nmicrobiol.2016.171. No abstract available.

PMID:
27670122
29.

Modified niche optima and breadths explain the historical contingency of bacterial community responses to eutrophication in coastal sediments.

Fodelianakis S, Moustakas A, Papageorgiou N, Manoli O, Tsikopoulou I, Michoud G, Daffonchio D, Karakassis I, Ladoukakis ED.

Mol Ecol. 2017 Apr;26(7):2006-2018. doi: 10.1111/mec.13842. Epub 2016 Oct 7.

PMID:
27662109
30.

Salicornia strobilacea (Synonym of Halocnemum strobilaceum) Grown under Different Tidal Regimes Selects Rhizosphere Bacteria Capable of Promoting Plant Growth.

Marasco R, Mapelli F, Rolli E, Mosqueira MJ, Fusi M, Bariselli P, Reddy M, Cherif A, Tsiamis G, Borin S, Daffonchio D.

Front Microbiol. 2016 Aug 22;7:1286. doi: 10.3389/fmicb.2016.01286. eCollection 2016.

31.

An impaired metabolic response to hydrostatic pressure explains Alcanivorax borkumensis recorded distribution in the deep marine water column.

Scoma A, Barbato M, Borin S, Daffonchio D, Boon N.

Sci Rep. 2016 Aug 12;6:31316. doi: 10.1038/srep31316.

32.

Ecological status and sources of anthropogenic contaminants in mangroves of the Wouri River Estuary (Cameroon).

Fusi M, Beone GM, Suciu NA, Sacchi A, Trevisan M, Capri E, Daffonchio D, Din N, Dahdouh-Guebas F, Cannicci S.

Mar Pollut Bull. 2016 Aug 30;109(2):723-33. doi: 10.1016/j.marpolbul.2016.06.104. Epub 2016 Jul 6.

PMID:
27394634
33.

Diversity, ecological distribution and biotechnological potential of Actinobacteria inhabiting seamounts and non-seamounts in the Tyrrhenian Sea.

Ettoumi B, Chouchane H, Guesmi A, Mahjoubi M, Brusetti L, Neifar M, Borin S, Daffonchio D, Cherif A.

Microbiol Res. 2016 May-Jun;186-187:71-80. doi: 10.1016/j.micres.2016.03.006. Epub 2016 Apr 1.

34.

A conceptual framework for invasion in microbial communities.

Kinnunen M, Dechesne A, Proctor C, Hammes F, Johnson D, Quintela-Baluja M, Graham D, Daffonchio D, Fodelianakis S, Hahn N, Boon N, Smets BF.

ISME J. 2016 Dec;10(12):2773-2775. doi: 10.1038/ismej.2016.75. Epub 2016 May 3. Review.

35.

Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

Scoma A, Barbato M, Hernandez-Sanabria E, Mapelli F, Daffonchio D, Borin S, Boon N.

Sci Rep. 2016 Mar 29;6:23526. doi: 10.1038/srep23526.

36.

Hydrocarbon pollutants shape bacterial community assembly of harbor sediments.

Barbato M, Mapelli F, Magagnini M, Chouaia B, Armeni M, Marasco R, Crotti E, Daffonchio D, Borin S.

Mar Pollut Bull. 2016 Mar 15;104(1-2):211-20. doi: 10.1016/j.marpolbul.2016.01.029. Epub 2016 Feb 2.

37.

The trade-off between heat tolerance and metabolic cost drives the bimodal life strategy at the air-water interface.

Fusi M, Cannicci S, Daffonchio D, Mostert B, Pörtner HO, Giomi F.

Sci Rep. 2016 Jan 13;6:19158. doi: 10.1038/srep19158.

38.

Draft Genome Sequence of the Hydrocarbon-Degrading Bacterium Alcanivorax dieselolei KS-293 Isolated from Surface Seawater in the Eastern Mediterranean Sea.

Barbato M, Mapelli F, Chouaia B, Crotti E, Daffonchio D, Borin S.

Genome Announc. 2015 Dec 10;3(6). pii: e01424-15. doi: 10.1128/genomeA.01424-15.

39.

Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data.

Bargiela R, Gertler C, Magagnini M, Mapelli F, Chen J, Daffonchio D, Golyshin PN, Ferrer M.

Front Microbiol. 2015 Nov 24;6:1270. doi: 10.3389/fmicb.2015.01270. eCollection 2015.

40.

Plant-mediated interspecific horizontal transmission of an intracellular symbiont in insects.

Gonella E, Pajoro M, Marzorati M, Crotti E, Mandrioli M, Pontini M, Bulgari D, Negri I, Sacchi L, Chouaia B, Daffonchio D, Alma A.

Sci Rep. 2015 Nov 13;5:15811. doi: 10.1038/srep15811.

41.

Bacterial Diversity and Bioremediation Potential of the Highly Contaminated Marine Sediments at El-Max District (Egypt, Mediterranean Sea).

Amer RA, Mapelli F, El Gendi HM, Barbato M, Goda DA, Corsini A, Cavalca L, Fusi M, Borin S, Daffonchio D, Abdel-Fattah YR.

Biomed Res Int. 2015;2015:981829. doi: 10.1155/2015/981829. Epub 2015 Jul 27.

42.

Diverse Reductive Dehalogenases Are Associated with Clostridiales-Enriched Microcosms Dechlorinating 1,2-Dichloroethane.

Merlino G, Balloi A, Marzorati M, Mapelli F, Rizzi A, Lavazza D, de Ferra F, Carpani G, Daffonchio D.

Biomed Res Int. 2015;2015:242856. doi: 10.1155/2015/242856. Epub 2015 Jul 26.

43.

Biotechnological applications of extremophiles, extremozymes and extremolytes.

Raddadi N, Cherif A, Daffonchio D, Neifar M, Fava F.

Appl Microbiol Biotechnol. 2015 Oct;99(19):7907-13. doi: 10.1007/s00253-015-6874-9. Epub 2015 Aug 14. Review.

PMID:
26272092
44.

Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes.

Sghaier H, Hezbri K, Ghodhbane-Gtari F, Pujic P, Sen A, Daffonchio D, Boudabous A, Tisa LS, Klenk HP, Armengaud J, Normand P, Gtari M.

ISME J. 2016 Jan;10(1):21-9. doi: 10.1038/ismej.2015.108. Epub 2015 Jun 30.

45.

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature.

Bargiela R, Mapelli F, Rojo D, Chouaia B, Tornés J, Borin S, Richter M, Del Pozo MV, Cappello S, Gertler C, Genovese M, Denaro R, Martínez-Martínez M, Fodelianakis S, Amer RA, Bigazzi D, Han X, Chen J, Chernikova TN, Golyshina OV, Mahjoubi M, Jaouanil A, Benzha F, Magagnini M, Hussein E, Al-Horani F, Cherif A, Blaghen M, Abdel-Fattah YR, Kalogerakis N, Barbas C, Malkawi HI, Golyshin PN, Yakimov MM, Daffonchio D, Ferrer M.

Sci Rep. 2015 Jun 29;5:11651. doi: 10.1038/srep11651.

46.

Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Gertler C, Bargiela R, Mapelli F, Han X, Chen J, Hai T, Amer RA, Mahjoubi M, Malkawi H, Magagnini M, Cherif A, Abdel-Fattah YR, Kalogerakis N, Daffonchio D, Ferrer M, Golyshin PN.

Microb Ecol. 2015 Nov;70(4):1034. doi: 10.1007/s00248-015-0631-6. No abstract available.

PMID:
26066513
47.

Oasis desert farming selects environment-specific date palm root endophytic communities and cultivable bacteria that promote resistance to drought.

Cherif H, Marasco R, Rolli E, Ferjani R, Fusi M, Soussi A, Mapelli F, Blilou I, Borin S, Boudabous A, Cherif A, Daffonchio D, Ouzari H.

Environ Microbiol Rep. 2015 Aug;7(4):668-78. doi: 10.1111/1758-2229.12304.

PMID:
26033617
48.

Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Gertler C, Bargiela R, Mapelli F, Han X, Chen J, Hai T, Amer RA, Mahjoubi M, Malkawi H, Magagnini M, Cherif A, Abdel-Fattah YR, Kalogerakis N, Daffonchio D, Ferrer M, Golyshin PN.

Microb Ecol. 2015 Oct;70(3):724-40. doi: 10.1007/s00248-015-0606-7. Epub 2015 Apr 29. Erratum in: Microb Ecol. 2015 Nov;70(4):1034.

49.

The date palm tree rhizosphere is a niche for plant growth promoting bacteria in the oasis ecosystem.

Ferjani R, Marasco R, Rolli E, Cherif H, Cherif A, Gtari M, Boudabous A, Daffonchio D, Ouzari HI.

Biomed Res Int. 2015;2015:153851. doi: 10.1155/2015/153851. Epub 2015 Mar 19.

50.

Effects of the diet on the microbiota of the red palm weevil (Coleoptera: Dryophthoridae).

Montagna M, Chouaia B, Mazza G, Prosdocimi EM, Crotti E, Mereghetti V, Vacchini V, Giorgi A, De Biase A, Longo S, Cervo R, Lozzia GC, Alma A, Bandi C, Daffonchio D.

PLoS One. 2015 Jan 30;10(1):e0117439. doi: 10.1371/journal.pone.0117439. eCollection 2015.

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