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Items: 1 to 50 of 108

1.

Phylogenetic Estimation of Community Composition and Novel Eukaryotic Lineages in Base Mine Lake, an Oil Sands Tailings Reclamation Site in Northern Alberta.

Richardson E, Bass D, Smirnova A, Paoli L, Dunfield P, Dacks JB.

J Eukaryot Microbiol. 2019 Aug 21. doi: 10.1111/jeu.12757. [Epub ahead of print]

PMID:
31432582
2.

The oxymonad genome displays canonical eukaryotic complexity in the absence of a mitochondrion.

Karnkowska A, Treitli SC, Brzoň O, Novák L, Vacek V, Soukal P, Barlow LD, Herman EK, Pipaliya SV, Pánek T, Žihala D, Petrželková R, Butenko A, Eme L, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Hampl V.

Mol Biol Evol. 2019 Aug 6. pii: msz147. doi: 10.1093/molbev/msz147. [Epub ahead of print]

PMID:
31387118
3.

Microbial Eukaryotes in Oil Sands Environments: Heterotrophs in the Spotlight.

Richardson E, Dacks JB.

Microorganisms. 2019 Jun 19;7(6). pii: E178. doi: 10.3390/microorganisms7060178. Review.

4.

A pan-apicomplexan phosphoinositide-binding protein acts in malarial microneme exocytosis.

Ebrahimzadeh Z, Mukherjee A, Crochetière MÈ, Sergerie A, Amiar S, Thompson LA, Gagnon D, Gaumond D, Stahelin RV, Dacks JB, Richard D.

EMBO Rep. 2019 Jun;20(6). pii: e47102. doi: 10.15252/embr.201847102. Epub 2019 May 16.

PMID:
31097469
5.

ARF GTPases and their GEFs and GAPs: concepts and challenges.

Sztul E, Chen PW, Casanova JE, Cherfils J, Dacks JB, Lambright DG, Lee FS, Randazzo PA, Santy LC, Schürmann A, Wilhelmi I, Yohe ME, Kahn RA.

Mol Biol Cell. 2019 May 15;30(11):1249-1271. doi: 10.1091/mbc.E18-12-0820.

PMID:
31084567
6.

Transcriptome, proteome and draft genome of Euglena gracilis.

Ebenezer TE, Zoltner M, Burrell A, Nenarokova A, Novák Vanclová AMG, Prasad B, Soukal P, Santana-Molina C, O'Neill E, Nankissoor NN, Vadakedath N, Daiker V, Obado S, Silva-Pereira S, Jackson AP, Devos DP, Lukeš J, Lebert M, Vaughan S, Hampl V, Carrington M, Ginger ML, Dacks JB, Kelly S, Field MC.

BMC Biol. 2019 Feb 7;17(1):11. doi: 10.1186/s12915-019-0626-8.

7.

Evolving eukaryotes: an interview with Joel Dacks.

Dacks JB.

BMC Biol. 2018 Nov 1;16(1):119. doi: 10.1186/s12915-018-0586-4.

8.

Evolutionary cell biology traces the rise of the exomer complex in Fungi from an ancient eukaryotic component.

Ramirez-Macias I, Barlow LD, Anton C, Spang A, Roncero C, Dacks JB.

Sci Rep. 2018 Jul 24;8(1):11154. doi: 10.1038/s41598-018-29416-4.

9.

Evolutionary origins and specialisation of membrane transport.

Dacks JB, Field MC.

Curr Opin Cell Biol. 2018 Aug;53:70-76. doi: 10.1016/j.ceb.2018.06.001. Epub 2018 Jun 19. Review.

10.

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends.

Klinger CM, Paoli L, Newby RJ, Wang MY, Carroll HD, Leblond JD, Howe CJ, Dacks JB, Bowler C, Cahoon AB, Dorrell RG, Richardson E.

Genome Biol Evol. 2018 Apr 1;10(4):1019-1038. doi: 10.1093/gbe/evy057.

11.

Regulation of early endosomes across eukaryotes: Evolution and functional homology of Vps9 proteins.

Herman EK, Ali M, Field MC, Dacks JB.

Traffic. 2018 Jul;19(7):546-563. doi: 10.1111/tra.12570. Epub 2018 Apr 25.

12.

Correction to: A sophisticated, differentiated Golgi in the ancestor of eukaryotes.

Barlow LD, Nývltová E, Aguilar M, Tachezy J, Dacks JB.

BMC Biol. 2018 Mar 28;16(1):35. doi: 10.1186/s12915-018-0510-y.

13.

Identification and characterisation of a cryptic Golgi complex in Naegleria gruberi.

Herman EK, Yiangou L, Cantoni DM, Miller CN, Marciano-Cabral F, Anthonyrajah E, Dacks JB, Tsaousis AD.

J Cell Sci. 2018 Apr 9;131(7). pii: jcs213306. doi: 10.1242/jcs.213306.

14.

A sophisticated, differentiated Golgi in the ancestor of eukaryotes.

Barlow LD, Nývltová E, Aguilar M, Tachezy J, Dacks JB.

BMC Biol. 2018 Mar 7;16(1):27. doi: 10.1186/s12915-018-0492-9. Erratum in: BMC Biol. 2018 Mar 28;16(1):35.

15.

Remodeling the Specificity of an Endosomal CORVET Tether Underlies Formation of Regulated Secretory Vesicles in the Ciliate Tetrahymena thermophila.

Sparvoli D, Richardson E, Osakada H, Lan X, Iwamoto M, Bowman GR, Kontur C, Bourland WA, Lynn DH, Pritchard JK, Haraguchi T, Dacks JB, Turkewitz AP.

Curr Biol. 2018 Mar 5;28(5):697-710.e13. doi: 10.1016/j.cub.2018.01.047. Epub 2018 Feb 22.

16.

Membrane Trafficking Modulation during Entamoeba Encystation.

Herman E, Siegesmund MA, Bottery MJ, van Aerle R, Shather MM, Caler E, Dacks JB, van der Giezen M.

Sci Rep. 2017 Oct 9;7(1):12854. doi: 10.1038/s41598-017-12875-6.

17.

Seeing the endomembrane system for the trees: Evolutionary analysis highlights the importance of plants as models for eukaryotic membrane-trafficking.

Barlow LD, Dacks JB.

Semin Cell Dev Biol. 2018 Aug;80:142-152. doi: 10.1016/j.semcdb.2017.09.027. Epub 2017 Oct 3. Review.

PMID:
28939036
18.

Genetic analysis of ID1-DBL2X predicts its validity as a vaccine candidate in Colombia and supports at least two independently introduced Plasmodium falciparum populations in the region.

Rajwani J, Klinger CM, Arango E, Arroyo MI, Sabbagh A, Maestre A, Dacks JB, Gnidehou S, Yanow SK.

Infect Genet Evol. 2017 Nov;55:175-185. doi: 10.1016/j.meegid.2017.09.003. Epub 2017 Sep 8.

PMID:
28893687
19.

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.

Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, Kolisko M, Rachubinski RA, Schlacht A, Soanes DM, Tsaousis AD, Archibald JM, Ball SG, Dacks JB, Clark CG, van der Giezen M, Roger AJ.

PLoS Biol. 2017 Sep 11;15(9):e2003769. doi: 10.1371/journal.pbio.2003769. eCollection 2017 Sep.

20.

Outerwear through the ages: evolutionary cell biology of vesicle coats.

Dacks JB, Robinson MS.

Curr Opin Cell Biol. 2017 Aug;47:108-116. doi: 10.1016/j.ceb.2017.04.001. Epub 2017 Jun 13. Review.

PMID:
28622586
21.

Evolution of the endomembrane systems of trypanosomatids - conservation and specialisation.

Venkatesh D, Boehm C, Barlow LD, Nankissoor NN, O'Reilly A, Kelly S, Dacks JB, Field MC.

J Cell Sci. 2017 Apr 15;130(8):1421-1434. doi: 10.1242/jcs.197640. Epub 2017 Apr 6.

22.

Progressive and Biased Divergent Evolution Underpins the Origin and Diversification of Peridinin Dinoflagellate Plastids.

Dorrell RG, Klinger CM, Newby RJ, Butterfield ER, Richardson E, Dacks JB, Howe CJ, Nisbet ER, Bowler C.

Mol Biol Evol. 2017 Feb 1;34(2):361-379. doi: 10.1093/molbev/msw235.

PMID:
27816910
23.

An evolutionary balance: conservation vs innovation in ciliate membrane trafficking.

Guerrier S, Plattner H, Richardson E, Dacks JB, Turkewitz AP.

Traffic. 2017 Jan;18(1):18-28. doi: 10.1111/tra.12450. Epub 2016 Oct 27. Review.

24.

Next-Generation Sequencing Assessment of Eukaryotic Diversity in Oil Sands Tailings Ponds Sediments and Surface Water.

Aguilar M, Richardson E, Tan B, Walker G, Dunfield PF, Bass D, Nesbø C, Foght J, Dacks JB.

J Eukaryot Microbiol. 2016 Nov;63(6):732-743. doi: 10.1111/jeu.12320. Epub 2016 May 2.

PMID:
27062087
25.

The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together.

Dacks JB, Field MC, Buick R, Eme L, Gribaldo S, Roger AJ, Brochier-Armanet C, Devos DP.

J Cell Sci. 2016 Oct 15;129(20):3695-3703. Epub 2016 Sep 26. Review.

26.

Resolving the homology-function relationship through comparative genomics of membrane-trafficking machinery and parasite cell biology.

Klinger CM, Ramirez-Macias I, Herman EK, Turkewitz AP, Field MC, Dacks JB.

Mol Biochem Parasitol. 2016 Sep - Oct;209(1-2):88-103. doi: 10.1016/j.molbiopara.2016.07.003. Epub 2016 Jul 19. Review.

27.

A Eukaryote without a Mitochondrial Organelle.

Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Vlček Č, Hampl V.

Curr Biol. 2016 May 23;26(10):1274-84. doi: 10.1016/j.cub.2016.03.053. Epub 2016 May 12.

28.

Exclusive expression of the Rab11 effector SH3TC2 in Schwann cells links integrin-α6 and myelin maintenance to Charcot-Marie-Tooth disease type 4C.

Vijay S, Chiu M, Dacks JB, Roberts RC.

Biochim Biophys Acta. 2016 Jul;1862(7):1279-90. doi: 10.1016/j.bbadis.2016.04.003. Epub 2016 Apr 9.

29.

The evolution of MICOS: Ancestral and derived functions and interactions.

Muñoz-Gómez SA, Slamovits CH, Dacks JB, Wideman JG.

Commun Integr Biol. 2015 Oct 12;8(6):e1094593. doi: 10.1080/19420889.2015.1094593. eCollection 2015 Nov-Dec.

30.

Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks.

Klinger CM, Spang A, Dacks JB, Ettema TJ.

Mol Biol Evol. 2016 Jun;33(6):1528-41. doi: 10.1093/molbev/msw034. Epub 2016 Feb 17.

PMID:
26893300
31.

Kinetoplastid Phylogenomics Reveals the Evolutionary Innovations Associated with the Origins of Parasitism.

Jackson AP, Otto TD, Aslett M, Armstrong SD, Bringaud F, Schlacht A, Hartley C, Sanders M, Wastling JM, Dacks JB, Acosta-Serrano A, Field MC, Ginger ML, Berriman M.

Curr Biol. 2016 Jan 25;26(2):161-172. doi: 10.1016/j.cub.2015.11.055. Epub 2015 Dec 24. Review.

32.

Evolutionary cell biology: functional insight from "endless forms most beautiful".

Richardson E, Zerr K, Tsaousis A, Dorrell RG, Dacks JB.

Mol Biol Cell. 2015 Dec 15;26(25):4532-8. doi: 10.1091/mbc.E14-10-1433.

33.

Losses, Expansions, and Novel Subunit Discovery of Adaptor Protein Complexes in Haptophyte Algae.

Lee LJ, Klute MJ, Herman EK, Read B, Dacks JB.

Protist. 2015 Nov;166(5):585-97. doi: 10.1016/j.protis.2015.07.004. Epub 2015 Aug 6.

PMID:
26519625
34.

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda-Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron-Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A.

Elife. 2015 Jul 15;4:e06974. doi: 10.7554/eLife.06974.

35.

Ancient homology of the mitochondrial contact site and cristae organizing system points to an endosymbiotic origin of mitochondrial cristae.

Muñoz-Gómez SA, Slamovits CH, Dacks JB, Baier KA, Spencer KD, Wideman JG.

Curr Biol. 2015 Jun 1;25(11):1489-95. doi: 10.1016/j.cub.2015.04.006. Epub 2015 May 21.

36.

Interaction with the effector dynamin-related protein 1 (Drp1) is an ancient function of Rab32 subfamily proteins.

Ortiz-Sandoval CG, Hughes SC, Dacks JB, Simmen T.

Cell Logist. 2014 Oct 2;4(4):e986399. eCollection 2014 Oct-Dec.

37.

Unexpected ancient paralogs and an evolutionary model for the COPII coat complex.

Schlacht A, Dacks JB.

Genome Biol Evol. 2015 Mar 5;7(4):1098-109. doi: 10.1093/gbe/evv045.

38.

An ancestral role in peroxisome assembly is retained by the divisional peroxin Pex11 in the yeast Yarrowia lipolytica.

Chang J, Klute MJ, Tower RJ, Mast FD, Dacks JB, Rachubinski RA.

J Cell Sci. 2015 Apr 1;128(7):1327-40. doi: 10.1242/jcs.157743. Epub 2015 Feb 6.

39.

A role for the ancient SNARE syntaxin 17 in regulating mitochondrial division.

Arasaki K, Shimizu H, Mogari H, Nishida N, Hirota N, Furuno A, Kudo Y, Baba M, Baba N, Cheng J, Fujimoto T, Ishihara N, Ortiz-Sandoval C, Barlow LD, Raturi A, Dohmae N, Wakana Y, Inoue H, Tani K, Dacks JB, Simmen T, Tagaya M.

Dev Cell. 2015 Feb 9;32(3):304-17. doi: 10.1016/j.devcel.2014.12.011. Epub 2015 Jan 22.

40.

A role for adaptor protein complex 1 in protein targeting to rhoptry organelles in Plasmodium falciparum.

Kaderi Kibria KM, Rawat K, Klinger CM, Datta G, Panchal M, Singh S, Iyer GR, Kaur I, Sharma V, Dacks JB, Mohmmed A, Malhotra P.

Biochim Biophys Acta. 2015 Mar;1853(3):699-710. doi: 10.1016/j.bbamcr.2014.12.030. Epub 2015 Jan 5.

41.

Phylogenetic analysis of glycerol 3-phosphate acyltransferases in opisthokonts reveals unexpected ancestral complexity and novel modern biosynthetic components.

Smart HC, Mast FD, Chilije MF, Tavassoli M, Dacks JB, Zaremberg V.

PLoS One. 2014 Oct 23;9(10):e110684. doi: 10.1371/journal.pone.0110684. eCollection 2014.

42.

Missing pieces of an ancient puzzle: evolution of the eukaryotic membrane-trafficking system.

Schlacht A, Herman EK, Klute MJ, Field MC, Dacks JB.

Cold Spring Harb Perspect Biol. 2014 Oct 1;6(10):a016048. doi: 10.1101/cshperspect.a016048. Review.

43.

Complex patterns of gene fission in the eukaryotic folate biosynthesis pathway.

Maguire F, Henriquez FL, Leonard G, Dacks JB, Brown MW, Richards TA.

Genome Biol Evol. 2014 Sep 23;6(10):2709-20. doi: 10.1093/gbe/evu213.

44.

Characterization of TSET, an ancient and widespread membrane trafficking complex.

Hirst J, Schlacht A, Norcott JP, Traynor D, Bloomfield G, Antrobus R, Kay RR, Dacks JB, Robinson MS.

Elife. 2014 May 27;3:e02866. doi: 10.7554/eLife.02866.

45.

From all to (nearly) none: Tracing adaptin evolution in Fungi.

Barlow LD, Dacks JB, Wideman JG.

Cell Logist. 2014 Jan 1;4(1):e28114. Epub 2014 Feb 21.

46.

Evolutionary mechanisms for establishing eukaryotic cellular complexity.

Mast FD, Barlow LD, Rachubinski RA, Dacks JB.

Trends Cell Biol. 2014 Jul;24(7):435-42. doi: 10.1016/j.tcb.2014.02.003. Epub 2014 Mar 19. Review.

PMID:
24656655
47.

The cell biology of the endocytic system from an evolutionary perspective.

Wideman JG, Leung KF, Field MC, Dacks JB.

Cold Spring Harb Perspect Biol. 2014 Apr 1;6(4):a016998. doi: 10.1101/cshperspect.a016998. Review.

48.

A comparative analysis of trypanosomatid SNARE proteins.

Murungi E, Barlow LD, Venkatesh D, Adung'a VO, Dacks JB, Field MC, Christoffels A.

Parasitol Int. 2014 Apr;63(2):341-8. doi: 10.1016/j.parint.2013.11.002. Epub 2013 Nov 22.

49.

Longin and GAF domains: structural evolution and adaptation to the subcellular trafficking machinery.

De Franceschi N, Wild K, Schlacht A, Dacks JB, Sinning I, Filippini F.

Traffic. 2014 Jan;15(1):104-21. doi: 10.1111/tra.12124. Epub 2013 Nov 11.

50.

Comparative genomic analysis of multi-subunit tethering complexes demonstrates an ancient pan-eukaryotic complement and sculpting in Apicomplexa.

Klinger CM, Klute MJ, Dacks JB.

PLoS One. 2013 Sep 27;8(9):e76278. doi: 10.1371/journal.pone.0076278. eCollection 2013.

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