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Items: 1 to 50 of 107

1.

μCT trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives.

Hughes N, Oliveira HR, Fradgley N, Corke FMK, Cockram J, Doonan JH, Nibau C.

Plant J. 2019 Jul;99(1):98-111. doi: 10.1111/tpj.14312. Epub 2019 Apr 10.

2.

Root imaging showing comparisons in root distribution and ontogeny in novel Festulolium populations and closely related perennial ryegrass varieties.

Humphreys MW, Doonan JH, Boyle R, Rodriguez AC, Marley CL, Williams K, Farrell MS, Brook J, Gasior D, Loka D, Collins RP, Marshall AH, Allen DK, Yadav RS, Dungait JAJ, Murray P, Harper JA.

Food Energy Secur. 2018 Nov;7(4):e00145. doi: 10.1002/fes3.145. Epub 2018 Oct 2.

3.

Cell Wall Epitopes and Endoploidy as Reporters of Embryogenic Potential in Brachypodium Distachyon Callus Culture.

Betekhtin A, Rojek M, Nowak K, Pinski A, Milewska-Hendel A, Kurczynska E, Doonan JH, Hasterok R.

Int J Mol Sci. 2018 Nov 29;19(12). pii: E3811. doi: 10.3390/ijms19123811.

4.

Combining high-throughput micro-CT-RGB phenotyping and genome-wide association study to dissect the genetic architecture of tiller growth in rice.

Wu D, Guo Z, Ye J, Feng H, Liu J, Chen G, Zheng J, Yan D, Yang X, Xiong X, Liu Q, Niu Z, Gay AP, Doonan JH, Xiong L, Yang W.

J Exp Bot. 2019 Jan 7;70(2):545-561. doi: 10.1093/jxb/ery373.

5.

Functional Mapping of Quantitative Trait Loci (QTLs) Associated With Plant Performance in a Wheat MAGIC Mapping Population.

Camargo AV, Mackay I, Mott R, Han J, Doonan JH, Askew K, Corke F, Williams K, Bentley AR.

Front Plant Sci. 2018 Jul 9;9:887. doi: 10.3389/fpls.2018.00887. eCollection 2018.

6.

Editorial: Phenomics.

Egea-Cortines M, Doonan JH.

Front Plant Sci. 2018 May 23;9:678. doi: 10.3389/fpls.2018.00678. eCollection 2018. No abstract available.

7.

The histone acetyltransferase GCN5 and the transcriptional coactivator ADA2b affect leaf development and trichome morphogenesis in Arabidopsis.

Kotak J, Saisana M, Gegas V, Pechlivani N, Kaldis A, Papoutsoglou P, Makris A, Burns J, Kendig AL, Sheikh M, Kuschner CE, Whitney G, Caiola H, Doonan JH, Vlachonasios KE, McCain ER, Hark AT.

Planta. 2018 Sep;248(3):613-628. doi: 10.1007/s00425-018-2923-9. Epub 2018 May 30.

PMID:
29846775
8.

Novel Digital Features Discriminate Between Drought Resistant and Drought Sensitive Rice Under Controlled and Field Conditions.

Duan L, Han J, Guo Z, Tu H, Yang P, Zhang D, Fan Y, Chen G, Xiong L, Dai M, Williams K, Corke F, Doonan JH, Yang W.

Front Plant Sci. 2018 Apr 17;9:492. doi: 10.3389/fpls.2018.00492. eCollection 2018.

9.

The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A.

Cavallari N, Nibau C, Fuchs A, Dadarou D, Barta A, Doonan JH.

Plant J. 2018 Jun;94(6):1010-1022. doi: 10.1111/tpj.13914. Epub 2018 May 10.

10.

Editorial: Plant Phenotyping and Phenomics for Plant Breeding.

Lobos GA, Camargo AV, Del Pozo A, Araus JL, Ortiz R, Doonan JH.

Front Plant Sci. 2017 Dec 22;8:2181. doi: 10.3389/fpls.2017.02181. eCollection 2017. No abstract available.

11.

The Mitotic Function of Augmin Is Dependent on Its Microtubule-Associated Protein Subunit EDE1 in Arabidopsis thaliana.

Lee YJ, Hiwatashi Y, Hotta T, Xie T, Doonan JH, Liu B.

Curr Biol. 2017 Dec 18;27(24):3891-3897.e4. doi: 10.1016/j.cub.2017.11.030. Epub 2017 Dec 7.

12.

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.

Cooper L, Meier A, Laporte MA, Elser JL, Mungall C, Sinn BT, Cavaliere D, Carbon S, Dunn NA, Smith B, Qu B, Preece J, Zhang E, Todorovic S, Gkoutos G, Doonan JH, Stevenson DW, Arnaud E, Jaiswal P.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1168-D1180. doi: 10.1093/nar/gkx1152.

13.

Non-destructive, high-content analysis of wheat grain traits using X-ray micro computed tomography.

Hughes N, Askew K, Scotson CP, Williams K, Sauze C, Corke F, Doonan JH, Nibau C.

Plant Methods. 2017 Nov 1;13:76. doi: 10.1186/s13007-017-0229-8. eCollection 2017.

14.

Linking Dynamic Phenotyping with Metabolite Analysis to Study Natural Variation in Drought Responses of Brachypodium distachyon.

Fisher LH, Han J, Corke FM, Akinyemi A, Didion T, Nielsen KK, Doonan JH, Mur LA, Bosch M.

Front Plant Sci. 2016 Nov 29;7:1751. eCollection 2016.

15.

Determining Phenological Patterns Associated with the Onset of Senescence in a Wheat MAGIC Mapping Population.

Camargo AV, Mott R, Gardner KA, Mackay IJ, Corke F, Doonan JH, Kim JT, Bentley AR.

Front Plant Sci. 2016 Oct 24;7:1540. eCollection 2016.

16.

Natural Variation in Brachypodium Links Vernalization and Flowering Time Loci as Major Flowering Determinants.

Bettgenhaeuser J, Corke FM, Opanowicz M, Green P, Hernández-Pinzón I, Doonan JH, Moscou MJ.

Plant Physiol. 2017 Jan;173(1):256-268. doi: 10.1104/pp.16.00813. Epub 2016 Sep 20.

17.

eIF4A RNA Helicase Associates with Cyclin-Dependent Protein Kinase A in Proliferating Cells and Is Modulated by Phosphorylation.

Bush MS, Pierrat O, Nibau C, Mikitova V, Zheng T, Corke FM, Vlachonasios K, Mayberry LK, Browning KS, Doonan JH.

Plant Physiol. 2016 Sep;172(1):128-40. doi: 10.1104/pp.16.00435. Epub 2016 Jul 7.

18.

The RNA helicase, eIF4A-1, is required for ovule development and cell size homeostasis in Arabidopsis.

Bush MS, Crowe N, Zheng T, Doonan JH.

Plant J. 2015 Dec;84(5):989-1004. doi: 10.1111/tpj.13062.

19.

Transcriptional repression by MYB3R proteins regulates plant organ growth.

Kobayashi K, Suzuki T, Iwata E, Nakamichi N, Suzuki T, Chen P, Ohtani M, Ishida T, Hosoya H, Müller S, Leviczky T, Pettkó-Szandtner A, Darula Z, Iwamoto A, Nomoto M, Tada Y, Higashiyama T, Demura T, Doonan JH, Hauser MT, Sugimoto K, Umeda M, Magyar Z, Bögre L, Ito M.

EMBO J. 2015 Aug 4;34(15):1992-2007. doi: 10.15252/embj.201490899. Epub 2015 Jun 11.

20.

Arabidopsis KCBP interacts with AIR9 but stays in the cortical division zone throughout mitosis via its MyTH4-FERM domain.

Buschmann H, Dols J, Kopischke S, Peña EJ, Andrade-Navarro MA, Heinlein M, Szymanski DB, Zachgo S, Doonan JH, Lloyd CW.

J Cell Sci. 2015 Jun 1;128(11):2033-46. doi: 10.1242/jcs.156570. Epub 2015 Apr 23.

21.

Objective definition of rosette shape variation using a combined computer vision and data mining approach.

Camargo A, Papadopoulou D, Spyropoulou Z, Vlachonasios K, Doonan JH, Gay AP.

PLoS One. 2014 May 7;9(5):e96889. doi: 10.1371/journal.pone.0096889. eCollection 2014.

22.

Kinesins have a dual function in organizing microtubules during both tip growth and cytokinesis in Physcomitrella patens.

Hiwatashi Y, Sato Y, Doonan JH.

Plant Cell. 2014 Mar;26(3):1256-66. doi: 10.1105/tpc.113.121723. Epub 2014 Mar 18.

23.

Endopolyploidy as a potential alternative adaptive strategy for Arabidopsis leaf size variation in response to UV-B.

Gegas VC, Wargent JJ, Pesquet E, Granqvist E, Paul ND, Doonan JH.

J Exp Bot. 2014 Jun;65(10):2757-66. doi: 10.1093/jxb/ert473. Epub 2014 Jan 27. Review.

24.

CDKG1 protein kinase is essential for synapsis and male meiosis at high ambient temperature in Arabidopsis thaliana.

Zheng T, Nibau C, Phillips DW, Jenkins G, Armstrong SJ, Doonan JH.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2182-7. doi: 10.1073/pnas.1318460111. Epub 2014 Jan 27.

25.

Gene dosage effect of WEE1 on growth and morphogenesis from arabidopsis hypocotyl explants.

Spadafora N, Perrotta L, Nieuwland J, Albani D, Bitonti MB, Herbert RJ, Doonan JH, Marchbank AM, Siciliano I, Lentz Grønlund A, Francis D, Rogers HJ.

Ann Bot. 2012 Dec;110(8):1631-9. doi: 10.1093/aob/mcs223. Epub 2012 Oct 11.

26.

T-DNA mutagenesis in Brachypodium distachyon.

Thole V, Peraldi A, Worland B, Nicholson P, Doonan JH, Vain P.

J Exp Bot. 2012 Jan;63(2):567-76. doi: 10.1093/jxb/err333. Epub 2011 Nov 16. Review.

PMID:
22090444
27.

The auxin signalling network translates dynamic input into robust patterning at the shoot apex.

Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D, Guédon Y, Armitage L, Picard F, Guyomarc'h S, Cellier C, Parry G, Koumproglou R, Doonan JH, Estelle M, Godin C, Kepinski S, Bennett M, De Veylder L, Traas J.

Mol Syst Biol. 2011 Jul 5;7:508. doi: 10.1038/msb.2011.39.

28.

Interaction of a 14-3-3 protein with the plant microtubule-associated protein EDE1.

Pignocchi C, Doonan JH.

Ann Bot. 2011 May;107(7):1103-9. doi: 10.1093/aob/mcr050.

29.

Cyclin dependent protein kinases and stress responses in plants.

Kitsios G, Doonan JH.

Plant Signal Behav. 2011 Feb;6(2):204-9. Epub 2011 Feb 1. Review.

30.

A T-DNA mutation in the RNA helicase eIF4A confers a dose-dependent dwarfing phenotype in Brachypodium distachyon.

Vain P, Thole V, Worland B, Opanowicz M, Bush MS, Doonan JH.

Plant J. 2011 Jun;66(6):929-40. doi: 10.1111/j.1365-313X.2011.04555.x. Epub 2011 Apr 4.

31.

Cytoskeletal dynamics in interphase, mitosis and cytokinesis analysed through Agrobacterium-mediated transient transformation of tobacco BY-2 cells.

Buschmann H, Green P, Sambade A, Doonan JH, Lloyd CW.

New Phytol. 2011 Apr;190(1):258-67. doi: 10.1111/j.1469-8137.2010.03587.x. Epub 2010 Dec 23.

32.

Endosperm development in Brachypodium distachyon.

Opanowicz M, Hands P, Betts D, Parker ML, Toole GA, Mills EN, Doonan JH, Drea S.

J Exp Bot. 2011 Jan;62(2):735-48. doi: 10.1093/jxb/erq309. Epub 2010 Nov 11.

33.

Plant organelle proteomics: collaborating for optimal cell function.

Agrawal GK, Bourguignon J, Rolland N, Ephritikhine G, Ferro M, Jaquinod M, Alexiou KG, Chardot T, Chakraborty N, Jolivet P, Doonan JH, Rakwal R.

Mass Spectrom Rev. 2011 Sep-Oct;30(5):772-853. doi: 10.1002/mas.20301. Epub 2010 Oct 29. Review.

PMID:
21038434
34.

Walls around tumours - why plants do not develop cancer.

Doonan JH, Sablowski R.

Nat Rev Cancer. 2010 Nov;10(11):794-802. doi: 10.1038/nrc2942. Epub 2010 Oct 22. Review.

PMID:
20966923
35.

Cyclin-dependent kinase activity maintains the shoot apical meristem cells in an undifferentiated state.

Gaamouche T, Manes CL, Kwiatkowska D, Berckmans B, Koumproglou R, Maes S, Beeckman T, Vernoux T, Doonan JH, Traas J, Inzé D, De Veylder L.

Plant J. 2010 Oct;64(1):26-37. doi: 10.1111/j.1365-313X.2010.04317.x.

36.

Arabidopsis T-DNA insertional lines for CDC25 are hypersensitive to hydroxyurea but not to zeocin or salt stress.

Spadafora ND, Doonan JH, Herbert RJ, Bitonti MB, Wallace E, Rogers HJ, Francis D.

Ann Bot. 2011 May;107(7):1183-92. doi: 10.1093/aob/mcq142. Epub 2010 Jul 20.

37.

A genetic framework for grain size and shape variation in wheat.

Gegas VC, Nazari A, Griffiths S, Simmonds J, Fish L, Orford S, Sayers L, Doonan JH, Snape JW.

Plant Cell. 2010 Apr;22(4):1046-56. doi: 10.1105/tpc.110.074153. Epub 2010 Apr 2.

38.

The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci.

Havecker ER, Wallbridge LM, Hardcastle TJ, Bush MS, Kelly KA, Dunn RM, Schwach F, Doonan JH, Baulcombe DC.

Plant Cell. 2010 Feb;22(2):321-34. doi: 10.1105/tpc.109.072199. Epub 2010 Feb 19.

39.

Polyploidy-associated genomic instability in Arabidopsis thaliana.

Wang Y, Jha AK, Chen R, Doonan JH, Yang M.

Genesis. 2010 Apr;48(4):254-63. doi: 10.1002/dvg.20610.

PMID:
20143347
40.

AtTRB1, a telomeric DNA-binding protein from Arabidopsis, is concentrated in the nucleolus and shows highly dynamic association with chromatin.

Dvorácková M, Rossignol P, Shaw PJ, Koroleva OA, Doonan JH, Fajkus J.

Plant J. 2010 Feb;61(4):637-49. doi: 10.1111/j.1365-313X.2009.04094.x. Epub 2009 Nov 27.

41.

Selective recruitment of proteins to 5' cap complexes during the growth cycle in Arabidopsis.

Bush MS, Hutchins AP, Jones AM, Naldrett MJ, Jarmolowski A, Lloyd CW, Doonan JH.

Plant J. 2009 Aug;59(3):400-12. doi: 10.1111/j.1365-313X.2009.03882.x. Epub 2009 Mar 30.

42.

UVR8 in Arabidopsis thaliana regulates multiple aspects of cellular differentiation during leaf development in response to ultraviolet B radiation.

Wargent JJ, Gegas VC, Jenkins GI, Doonan JH, Paul ND.

New Phytol. 2009;183(2):315-26. doi: 10.1111/j.1469-8137.2009.02855.x. Epub 2009 Apr 27.

43.

In situ analysis of gene expression in plants.

Drea S, Derbyshire P, Koumproglou R, Dolan L, Doonan JH, Shaw P.

Methods Mol Biol. 2009;513:229-42. doi: 10.1007/978-1-59745-427-8_12.

PMID:
19347657
44.

ENDOSPERM DEFECTIVE1 Is a Novel Microtubule-Associated Protein Essential for Seed Development in Arabidopsis.

Pignocchi C, Minns GE, Nesi N, Koumproglou R, Kitsios G, Benning C, Lloyd CW, Doonan JH, Hills MJ.

Plant Cell. 2009 Jan;21(1):90-105. doi: 10.1105/tpc.108.061812. Epub 2009 Jan 16.

45.

Functional evolution of cyclin-dependent kinases.

Doonan JH, Kitsios G.

Mol Biotechnol. 2009 May;42(1):14-29. doi: 10.1007/s12033-008-9126-8. Epub 2009 Jan 15. Review.

PMID:
19145493
46.

Arabidopsis reactome: a foundation knowledgebase for plant systems biology.

Tsesmetzis N, Couchman M, Higgins J, Smith A, Doonan JH, Seifert GJ, Schmidt EE, Vastrik I, Birney E, Wu G, D'Eustachio P, Stein LD, Morris RJ, Bevan MW, Walsh SV.

Plant Cell. 2008 Jun;20(6):1426-36. doi: 10.1105/tpc.108.057976. Epub 2008 Jun 30. No abstract available.

47.

Brachypodium distachyon: making hay with a wild grass.

Opanowicz M, Vain P, Draper J, Parker D, Doonan JH.

Trends Plant Sci. 2008 Apr;13(4):172-7. doi: 10.1016/j.tplants.2008.01.007. Epub 2008 Mar 17. Review. Erratum in: Trends Plant Sci. 2014 Mar;19(3):193.

PMID:
18343709
48.

Proximal-distal patterns of transcription factor gene expression during Arabidopsis root development.

Derbyshire P, Drea S, Shaw PJ, Doonan JH, Dolan L.

J Exp Bot. 2008;59(2):235-45. doi: 10.1093/jxb/erm301. Epub 2008 Feb 7.

PMID:
18263631
49.

A cyclin-dependent protein kinase, CDKC2, colocalizes with and modulates the distribution of spliceosomal components in Arabidopsis.

Kitsios G, Alexiou KG, Bush M, Shaw P, Doonan JH.

Plant J. 2008 Apr;54(2):220-35. doi: 10.1111/j.1365-313X.2008.03414.x. Epub 2008 Jan 16.

50.

Control of protein translation by phosphorylation of the mRNA 5'-cap-binding complex.

Pierrat OA, Mikitova V, Bush MS, Browning KS, Doonan JH.

Biochem Soc Trans. 2007 Dec;35(Pt 6):1634-7. Review.

PMID:
18031281

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