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Items: 31

1.

Variations of circulating miRNA in paediatric patients with Heart Failure supported with Ventricular Assist Device: a pilot study.

Ragusa R, Di Molfetta A, D'Aurizio R, Del Turco S, Cabiati M, Del Ry S, Basta G, Pitto L, Amodeo A, Trivella MG, Rizzo M, Caselli C.

Sci Rep. 2020 Apr 3;10(1):5905. doi: 10.1038/s41598-020-62757-7.

2.

The miR-28-5p Targetome Discovery Identified SREBF2 as One of the Mediators of the miR-28-5p Tumor Suppressor Activity in Prostate Cancer Cells.

Fazio S, Berti G, Russo F, Evangelista M, D'Aurizio R, Mercatanti A, Pellegrini M, Rizzo M.

Cells. 2020 Feb 3;9(2). pii: E354. doi: 10.3390/cells9020354.

3.

Altered Metabolic Profile and Adipocyte Insulin Resistance Mark Severe Liver Fibrosis in Patients with Chronic Liver Disease.

Gaggini M, Carli F, Rosso C, Younes R, D'Aurizio R, Bugianesi E, Gastaldelli A.

Int J Mol Sci. 2019 Dec 16;20(24). pii: E6333. doi: 10.3390/ijms20246333.

4.

Characterization of pUL5, an HCMV protein interacting with the cellular protein IQGAP1.

Anselmi G, Giuliani M, Vezzani G, Ferranti R, Gentile M, Cortese M, Amendola D, Pacchiani N, D'Aurizio R, Bruno L, Uematsu Y, Merola M, Maione D.

Virology. 2020 Jan 15;540:57-65. doi: 10.1016/j.virol.2019.10.018. Epub 2019 Nov 3.

5.

miR-182-5p is an evolutionarily conserved Tbx5 effector that impacts cardiac development and electrical activity in zebrafish.

Guzzolino E, Pellegrino M, Ahuja N, Garrity D, D'Aurizio R, Groth M, Baumgart M, Hatcher CJ, Mercatanti A, Evangelista M, Ippolito C, Tognoni E, Fukuda R, Lionetti V, Pellegrini M, Cremisi F, Pitto L.

Cell Mol Life Sci. 2019 Nov 4. doi: 10.1007/s00018-019-03343-7. [Epub ahead of print]

PMID:
31686119
6.

RNA sequencing reveals PNN and KCNQ1OT1 as predictive biomarkers of clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy.

Mini E, Lapucci A, Perrone G, D'Aurizio R, Napoli C, Brugia M, Landini I, Tassi R, Picariello L, Simi L, Mancini I, Messerini L, Magi A, Pinzani P, Mazzei T, Tonelli F, Nobili S.

Int J Cancer. 2019 Nov 1;145(9):2580-2593. doi: 10.1002/ijc.32326. Epub 2019 Jun 3.

PMID:
30973654
7.

Systematic evaluation of the microRNAome through miR-CATCHv2.0 identifies positive and negative regulators of BRAF-X1 mRNA.

Marranci A, D'Aurizio R, Vencken S, Mero S, Guzzolino E, Rizzo M, Pitto L, Pellegrini M, Chiorino G, Greene CM, Poliseno L.

RNA Biol. 2019 Jul;16(7):865-878. doi: 10.1080/15476286.2019.1600934. Epub 2019 Apr 19.

PMID:
30929607
8.

Early modifications of circulating microRNAs levels in metastatic colorectal cancer patients treated with regorafenib.

Schirripa M, Borelli B, D'Aurizio R, Lubrano S, Cremolini C, Zucchelli G, Antoniotti C, Marmorino F, Prete AA, Murgioni S, Bergamo F, Zagonel V, Tuccoli A, Marranci A, Rizzo M, Tedeschi L, Magnoni L, Falcone A, Loupakis F, Poliseno L.

Pharmacogenomics J. 2019 Oct;19(5):455-464. doi: 10.1038/s41397-019-0075-3. Epub 2019 Jan 28.

PMID:
30686821
9.

Fetal cardiac growth is associated with in utero gut colonization.

Guzzardi MA, Ait Ali L, D'Aurizio R, Rizzo F, Saggese P, Sanguinetti E, Weisz A, Pellegrini M, Iozzo P.

Nutr Metab Cardiovasc Dis. 2019 Feb;29(2):170-176. doi: 10.1016/j.numecd.2018.10.005. Epub 2018 Oct 19.

PMID:
30579777
10.

Activation of the interferon type I response rather than autophagy contributes to myogenesis inhibition in congenital DM1 myoblasts.

Rizzo M, Beffy P, Del Carratore R, Falleni A, Pretini V, D'Aurizio R, Botta A, Evangelista M, Stoccoro A, Coppedè F, Furling D, Simili M.

Cell Death Dis. 2018 Oct 19;9(11):1071. doi: 10.1038/s41419-018-1080-1.

11.

Biological role of miR-204 and miR-211 in melanoma.

Vitiello M, D'Aurizio R, Poliseno L.

Oncoscience. 2018 Aug 22;5(7-8):248-251. doi: 10.18632/oncoscience.443. eCollection 2018 Jul.

12.

Integrative analysis of differentially expressed genes and miRNAs predicts complex T3-mediated protective circuits in a rat model of cardiac ischemia reperfusion.

Forini F, Nicolini G, Kusmic C, D'Aurizio R, Rizzo M, Baumgart M, Groth M, Doccini S, Iervasi G, Pitto L.

Sci Rep. 2018 Sep 14;8(1):13870. doi: 10.1038/s41598-018-32237-0.

13.

Using XCAVATOR and EXCAVATOR2 to Identify CNVs from WGS, WES, and TS Data.

D'Aurizio R, Semeraro R, Magi A.

Curr Protoc Hum Genet. 2018 Jul 5:e65. doi: 10.1002/cphg.65. [Epub ahead of print]

PMID:
29975818
14.

A Census of Tandemly Repeated Polymorphic Loci in Genic Regions Through the Comparative Integration of Human Genome Assemblies.

Genovese LM, Geraci F, Corrado L, Mangano E, D'Aurizio R, Bordoni R, Severgnini M, Manzini G, De Bellis G, D'Alfonso S, Pellegrini M.

Front Genet. 2018 May 2;9:155. doi: 10.3389/fgene.2018.00155. eCollection 2018.

15.

The creation and selection of mutations resistant to a gene drive over multiple generations in the malaria mosquito.

Hammond AM, Kyrou K, Bruttini M, North A, Galizi R, Karlsson X, Kranjc N, Carpi FM, D'Aurizio R, Crisanti A, Nolan T.

PLoS Genet. 2017 Oct 4;13(10):e1007039. doi: 10.1371/journal.pgen.1007039. eCollection 2017 Oct.

16.

Discovering the miR-26a-5p Targetome in Prostate Cancer Cells.

Rizzo M, Berti G, Russo F, Fazio S, Evangelista M, D'Aurizio R, Pellegrini M, Rainaldi G.

J Cancer. 2017 Aug 22;8(14):2729-2739. doi: 10.7150/jca.18396. eCollection 2017.

17.

The Prostate Cancer Cells Resistant to Docetaxel as in vitro Model for Discovering MicroRNAs Predictive of the Onset of Docetaxel Resistance.

Bascetta L, Oliviero A, D'Aurizio R, Evangelista M, Mercatanti A, Pellegrini M, Marrocolo F, Bracarda S, Rizzo M.

Int J Mol Sci. 2017 Jul 13;18(7). pii: E1512. doi: 10.3390/ijms18071512.

18.

Nanopore sequencing data analysis: state of the art, applications and challenges.

Magi A, Semeraro R, Mingrino A, Giusti B, D'Aurizio R.

Brief Bioinform. 2018 Nov 27;19(6):1256-1272. doi: 10.1093/bib/bbx062.

PMID:
28637243
19.

Context-dependent miR-204 and miR-211 affect the biological properties of amelanotic and melanotic melanoma cells.

Vitiello M, Tuccoli A, D'Aurizio R, Sarti S, Giannecchini L, Lubrano S, Marranci A, Evangelista M, Peppicelli S, Ippolito C, Barravecchia I, Guzzolino E, Montagnani V, Gowen M, Mercoledi E, Mercatanti A, Comelli L, Gurrieri S, Wu LW, Ope O, Flaherty K, Boland GM, Hammond MR, Kwong L, Chiariello M, Stecca B, Zhang G, Salvetti A, Angeloni D, Pitto L, Calorini L, Chiorino G, Pellegrini M, Herlyn M, Osman I, Poliseno L.

Oncotarget. 2017 Apr 11;8(15):25395-25417. doi: 10.18632/oncotarget.15915.

20.

In-silico prediction and deep-DNA sequencing validation indicate phase variation in 115 Neisseria meningitidis genes.

Siena E, D'Aurizio R, Riley D, Tettelin H, Guidotti S, Torricelli G, Moxon ER, Medini D.

BMC Genomics. 2016 Oct 28;17(1):843.

21.

Enhanced copy number variants detection from whole-exome sequencing data using EXCAVATOR2.

D'Aurizio R, Pippucci T, Tattini L, Giusti B, Pellegrini M, Magi A.

Nucleic Acids Res. 2016 Nov 16;44(20):e154. Epub 2016 Aug 9.

22.

Discovering miRNA Regulatory Networks in Holt-Oram Syndrome Using a Zebrafish Model.

D'Aurizio R, Russo F, Chiavacci E, Baumgart M, Groth M, D'Onofrio M, Arisi I, Rainaldi G, Pitto L, Pellegrini M.

Front Bioeng Biotechnol. 2016 Jul 14;4:60. doi: 10.3389/fbioe.2016.00060. eCollection 2016.

23.

Epilepsy with auditory features: A heterogeneous clinico-molecular disease.

Pippucci T, Licchetta L, Baldassari S, Palombo F, Menghi V, D'Aurizio R, Leta C, Stipa C, Boero G, d'Orsi G, Magi A, Scheffer I, Seri M, Tinuper P, Bisulli F.

Neurol Genet. 2015 May 14;1(1):e5. doi: 10.1212/NXG.0000000000000005. eCollection 2015 Jun.

24.

MicroRNA 19a replacement partially rescues fin and cardiac defects in zebrafish model of Holt Oram syndrome.

Chiavacci E, D'Aurizio R, Guzzolino E, Russo F, Baumgart M, Groth M, Mariani L, D'Onofrio M, Arisi I, Pellegrini M, Cellerino A, Cremisi F, Pitto L.

Sci Rep. 2015 Dec 14;5:18240. doi: 10.1038/srep18240.

25.

Detection of Genomic Structural Variants from Next-Generation Sequencing Data.

Tattini L, D'Aurizio R, Magi A.

Front Bioeng Biotechnol. 2015 Jun 25;3:92. doi: 10.3389/fbioe.2015.00092. eCollection 2015. Review.

26.

Characterization and identification of hidden rare variants in the human genome.

Magi A, D'Aurizio R, Palombo F, Cifola I, Tattini L, Semeraro R, Pippucci T, Giusti B, Romeo G, Abbate R, Gensini GF.

BMC Genomics. 2015 Apr 24;16:340. doi: 10.1186/s12864-015-1481-9.

27.

Differential regulation of microRNAs in end-stage failing hearts is associated with left ventricular assist device unloading.

Barsanti C, Trivella MG, D'Aurizio R, El Baroudi M, Baumgart M, Groth M, Caruso R, Verde A, Botta L, Cozzi L, Pitto L.

Biomed Res Int. 2015;2015:592512. doi: 10.1155/2015/592512. Epub 2015 Feb 1.

28.

EXCAVATOR: detecting copy number variants from whole-exome sequencing data.

Magi A, Tattini L, Cifola I, D'Aurizio R, Benelli M, Mangano E, Battaglia C, Bonora E, Kurg A, Seri M, Magini P, Giusti B, Romeo G, Pippucci T, De Bellis G, Abbate R, Gensini GF.

Genome Biol. 2013;14(10):R120.

29.

Recombinant human cytomegalovirus (HCMV) RL13 binds human immunoglobulin G Fc.

Cortese M, Calò S, D'Aurizio R, Lilja A, Pacchiani N, Merola M.

PLoS One. 2012;7(11):e50166. doi: 10.1371/journal.pone.0050166. Epub 2012 Nov 30.

30.

Surfome analysis as a fast track to vaccine discovery: identification of a novel protective antigen for Group B Streptococcus hypervirulent strain COH1.

Doro F, Liberatori S, Rodríguez-Ortega MJ, Rinaudo CD, Rosini R, Mora M, Scarselli M, Altindis E, D'Aurizio R, Stella M, Margarit I, Maione D, Telford JL, Norais N, Grandi G.

Mol Cell Proteomics. 2009 Jul;8(7):1728-37. doi: 10.1074/mcp.M800486-MCP200. Epub 2009 Apr 28.

31.

Role of antral follicle development and cumulus cells on in vitro fertilization of mouse oocytes.

Cecconi S, D'Aurizio R, Colonna R.

J Reprod Fertil. 1996 Jul;107(2):207-14.

PMID:
8882286

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