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Items: 1 to 50 of 58

1.

The complex of MCMV proteins and MHC class I evades NK cell control and drives the evolution of virus-specific activating Ly49 receptors.

Železnjak J, Lisnić VJ, Popović B, Lisnić B, Babić M, Halenius A, L'Hernault A, Roviš TL, Hengel H, Erhard F, Redwood AJ, Vidal SM, Dölken L, Krmpotić A, Jonjić S.

J Exp Med. 2019 May 29. pii: jem.20182213. doi: 10.1084/jem.20182213. [Epub ahead of print]

PMID:
31142589
2.

P-TEFb Activation by RBM7 Shapes a Pro-survival Transcriptional Response to Genotoxic Stress.

Bugai A, Quaresma AJC, Friedel CC, Lenasi T, Düster R, Sibley CR, Fujinaga K, Kukanja P, Hennig T, Blasius M, Geyer M, Ule J, Dölken L, Barborič M.

Mol Cell. 2019 Apr 18;74(2):254-267.e10. doi: 10.1016/j.molcel.2019.01.033. Epub 2019 Feb 26.

3.

Piscine Orthoreovirus 3 Is Not the Causative Pathogen of Proliferative Darkening Syndrome (PDS) of Brown Trout (Salmo trutta fario).

Fux R, Arndt D, Langenmayer MC, Schwaiger J, Ferling H, Fischer N, Indenbirken D, Grundhoff A, Dölken L, Adamek M, Steinhagen D, Sutter G.

Viruses. 2019 Jan 28;11(2). pii: E112. doi: 10.3390/v11020112.

4.

Dissecting newly transcribed and old RNA using GRAND-SLAM.

Jürges C, Dölken L, Erhard F.

Bioinformatics. 2018 Jul 1;34(13):i218-i226. doi: 10.1093/bioinformatics/bty256.

5.

HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes.

Hennig T, Michalski M, Rutkowski AJ, Djakovic L, Whisnant AW, Friedl MS, Jha BA, Baptista MAP, L'Hernault A, Erhard F, Dölken L, Friedel CC.

PLoS Pathog. 2018 Mar 26;14(3):e1006954. doi: 10.1371/journal.ppat.1006954. eCollection 2018 Mar.

6.

Improved Ribo-seq enables identification of cryptic translation events.

Erhard F, Halenius A, Zimmermann C, L'Hernault A, Kowalewski DJ, Weekes MP, Stevanovic S, Zimmer R, Dölken L.

Nat Methods. 2018 May;15(5):363-366. doi: 10.1038/nmeth.4631. Epub 2018 Mar 12.

7.

RNA dynamics revealed by metabolic RNA labeling and biochemical nucleoside conversions.

Baptista MAP, Dölken L.

Nat Methods. 2018 Feb 28;15(3):171-172. doi: 10.1038/nmeth.4608. No abstract available.

PMID:
29489745
8.

Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection.

Wyler E, Menegatti J, Franke V, Kocks C, Boltengagen A, Hennig T, Theil K, Rutkowski A, Ferrai C, Baer L, Kermas L, Friedel C, Rajewsky N, Akalin A, Dölken L, Grässer F, Landthaler M.

Genome Biol. 2017 Oct 31;18(1):209. doi: 10.1186/s13059-017-1329-5.

10.

An Interferon Regulated MicroRNA Provides Broad Cell-Intrinsic Antiviral Immunity through Multihit Host-Directed Targeting of the Sterol Pathway.

Robertson KA, Hsieh WY, Forster T, Blanc M, Lu H, Crick PJ, Yutuc E, Watterson S, Martin K, Griffiths SJ, Enright AJ, Yamamoto M, Pradeepa MM, Lennox KA, Behlke MA, Talbot S, Haas J, Dölken L, Griffiths WJ, Wang Y, Angulo A, Ghazal P.

PLoS Biol. 2016 Mar 3;14(3):e1002364. doi: 10.1371/journal.pbio.1002364. eCollection 2016 Mar.

11.

Effects of Prednisolone on Disease Progression in Antiretroviral-Untreated HIV Infection: A 2-Year Randomized, Double-Blind Placebo-Controlled Clinical Trial.

Kasang C, Kalluvya S, Majinge C, Kongola G, Mlewa M, Massawe I, Kabyemera R, Magambo K, Ulmer A, Klinker H, Gschmack E, Horn A, Koutsilieri E, Preiser W, Hofmann D, Hain J, Müller A, Dölken L, Weissbrich B, Rethwilm A, Stich A, Scheller C.

PLoS One. 2016 Jan 26;11(1):e0146678. doi: 10.1371/journal.pone.0146678. eCollection 2016.

12.

Small RNAs growing tall: miRNAs as drug targets in herpesvirus infections.

L'Hernault A, Dölken L.

Curr Opin Virol. 2015 Dec;15:41-7. doi: 10.1016/j.coviro.2015.07.010. Epub 2015 Aug 6. Review.

PMID:
26256575
13.

RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway.

Murakawa Y, Hinz M, Mothes J, Schuetz A, Uhl M, Wyler E, Yasuda T, Mastrobuoni G, Friedel CC, Dölken L, Kempa S, Schmidt-Supprian M, Blüthgen N, Backofen R, Heinemann U, Wolf J, Scheidereit C, Landthaler M.

Nat Commun. 2015 Jul 14;6:7367. doi: 10.1038/ncomms8367.

14.

Widespread disruption of host transcription termination in HSV-1 infection.

Rutkowski AJ, Erhard F, L'Hernault A, Bonfert T, Schilhabel M, Crump C, Rosenstiel P, Efstathiou S, Zimmer R, Friedel CC, Dölken L.

Nat Commun. 2015 May 20;6:7126. doi: 10.1038/ncomms8126.

15.

Lymph Node Macrophages Restrict Murine Cytomegalovirus Dissemination.

Farrell HE, Davis-Poynter N, Bruce K, Lawler C, Dolken L, Mach M, Stevenson PG.

J Virol. 2015 Jul;89(14):7147-58. doi: 10.1128/JVI.00480-15. Epub 2015 Apr 29.

16.

Murine cytomegalovirus virion-associated protein M45 mediates rapid NF-κB activation after infection.

Krause E, de Graaf M, Fliss PM, Dölken L, Brune W.

J Virol. 2014 Sep 1;88(17):9963-75. doi: 10.1128/JVI.00684-14. Epub 2014 Jun 18.

17.

Widespread context dependency of microRNA-mediated regulation.

Erhard F, Haas J, Lieber D, Malterer G, Jaskiewicz L, Zavolan M, Dölken L, Zimmer R.

Genome Res. 2014 Jun;24(6):906-19. doi: 10.1101/gr.166702.113. Epub 2014 Mar 25.

18.

Reversible silencing of cytomegalovirus genomes by type I interferon governs virus latency.

Dağ F, Dölken L, Holzki J, Drabig A, Weingärtner A, Schwerk J, Lienenklaus S, Conte I, Geffers R, Davenport C, Rand U, Köster M, Weiß S, Adler B, Wirth D, Messerle M, Hauser H, Cičin-Šain L.

PLoS Pathog. 2014 Feb 20;10(2):e1003962. doi: 10.1371/journal.ppat.1003962. eCollection 2014 Feb.

19.

Inactivation of intergenic enhancers by EBNA3A initiates and maintains polycomb signatures across a chromatin domain encoding CXCL10 and CXCL9.

Harth-Hertle ML, Scholz BA, Erhard F, Glaser LV, Dölken L, Zimmer R, Kempkes B.

PLoS Pathog. 2013 Sep;9(9):e1003638. doi: 10.1371/journal.ppat.1003638. Epub 2013 Sep 19.

20.

4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response.

Burger K, Mühl B, Kellner M, Rohrmoser M, Gruber-Eber A, Windhager L, Friedel CC, Dölken L, Eick D.

RNA Biol. 2013 Oct;10(10):1623-30. doi: 10.4161/rna.26214. Epub 2013 Sep 4.

21.
22.

Metabolic labeling of newly transcribed RNA for high resolution gene expression profiling of RNA synthesis, processing and decay in cell culture.

Rädle B, Rutkowski AJ, Ruzsics Z, Friedel CC, Koszinowski UH, Dölken L.

J Vis Exp. 2013 Aug 8;(78). doi: 10.3791/50195.

23.

PARma: identification of microRNA target sites in AGO-PAR-CLIP data.

Erhard F, Dölken L, Jaskiewicz L, Zimmer R.

Genome Biol. 2013 Jul 29;14(7):R79. doi: 10.1186/gb-2013-14-7-r79.

24.

Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.

Trilling M, Bellora N, Rutkowski AJ, de Graaf M, Dickinson P, Robertson K, Prazeres da Costa O, Ghazal P, Friedel CC, Albà MM, Dölken L.

Nucleic Acids Res. 2013 Sep;41(17):8107-25. doi: 10.1093/nar/gkt589. Epub 2013 Jul 5.

25.

Nontransformed, GM-CSF-dependent macrophage lines are a unique model to study tissue macrophage functions.

Fejer G, Wegner MD, Györy I, Cohen I, Engelhard P, Voronov E, Manke T, Ruzsics Z, Dölken L, Prazeres da Costa O, Branzk N, Huber M, Prasse A, Schneider R, Apte RN, Galanos C, Freudenberg MA.

Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):E2191-8. doi: 10.1073/pnas.1302877110. Epub 2013 May 24.

26.

Natural killer cells are required for extramedullary hematopoiesis following murine cytomegalovirus infection.

Jordan S, Ruzsics Z, Mitrović M, Baranek T, Arapović J, Krmpotić A, Vivier E, Dalod M, Jonjić S, Dölken L, Koszinowski UH.

Cell Host Microbe. 2013 May 15;13(5):535-545. doi: 10.1016/j.chom.2013.04.007.

27.

Genome-wide survey of interindividual differences of RNA stability in human lymphoblastoid cell lines.

Duan J, Shi J, Ge X, Dölken L, Moy W, He D, Shi S, Sanders AR, Ross J, Gejman PV.

Sci Rep. 2013;3:1318. doi: 10.1038/srep01318.

28.

CDK8 kinase phosphorylates transcription factor STAT1 to selectively regulate the interferon response.

Bancerek J, Poss ZC, Steinparzer I, Sedlyarov V, Pfaffenwimmer T, Mikulic I, Dölken L, Strobl B, Müller M, Taatjes DJ, Kovarik P.

Immunity. 2013 Feb 21;38(2):250-62. doi: 10.1016/j.immuni.2012.10.017. Epub 2013 Jan 24.

29.

RIP-chip enrichment analysis.

Erhard F, Dölken L, Zimmer R.

Bioinformatics. 2013 Jan 1;29(1):77-83. doi: 10.1093/bioinformatics/bts631. Epub 2012 Oct 26.

PMID:
23104891
30.

Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection.

Marcinowski L, Lidschreiber M, Windhager L, Rieder M, Bosse JB, Rädle B, Bonfert T, Györy I, de Graaf M, Prazeres da Costa O, Rosenstiel P, Friedel CC, Zimmer R, Ruzsics Z, Dölken L.

PLoS Pathog. 2012 Sep;8(9):e1002908. doi: 10.1371/journal.ppat.1002908. Epub 2012 Sep 6.

31.

Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.

Windhager L, Bonfert T, Burger K, Ruzsics Z, Krebs S, Kaufmann S, Malterer G, L'Hernault A, Schilhabel M, Schreiber S, Rosenstiel P, Zimmer R, Eick D, Friedel CC, Dölken L.

Genome Res. 2012 Oct;22(10):2031-42. doi: 10.1101/gr.131847.111. Epub 2012 Apr 26.

32.

Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.

Marcinowski L, Tanguy M, Krmpotic A, Rädle B, Lisnić VJ, Tuddenham L, Chane-Woon-Ming B, Ruzsics Z, Erhard F, Benkartek C, Babic M, Zimmer R, Trgovcich J, Koszinowski UH, Jonjic S, Pfeffer S, Dölken L.

PLoS Pathog. 2012 Feb;8(2):e1002510. doi: 10.1371/journal.ppat.1002510. Epub 2012 Feb 9.

33.

Shedding light on the elusive role of endothelial cells in cytomegalovirus dissemination.

Sacher T, Andrassy J, Kalnins A, Dölken L, Jordan S, Podlech J, Ruzsics Z, Jauch KW, Reddehase MJ, Koszinowski UH.

PLoS Pathog. 2011 Nov;7(11):e1002366. doi: 10.1371/journal.ppat.1002366. Epub 2011 Nov 17.

34.

Small RNA deep sequencing identifies microRNAs and other small noncoding RNAs from human herpesvirus 6B.

Tuddenham L, Jung JS, Chane-Woon-Ming B, Dölken L, Pfeffer S.

J Virol. 2012 Feb;86(3):1638-49. doi: 10.1128/JVI.05911-11. Epub 2011 Nov 23.

35.

Synthesis and decay of varicella zoster virus transcripts.

Azarkh Y, Dölken L, Nagel M, Gilden D, Cohrs RJ.

J Neurovirol. 2011 Jun;17(3):281-7. doi: 10.1007/s13365-011-0029-2. Epub 2011 Apr 12.

36.

The miRNA-targetome of KSHV and EBV in human B-cells.

Malterer G, Dölken L, Haas J.

RNA Biol. 2011 Jan-Feb;8(1):30-4. Epub 2011 Jan 1.

PMID:
21301209
37.

Human cytomegalovirus disrupts the major histocompatibility complex class I peptide-loading complex and inhibits tapasin gene transcription.

Halenius A, Hauka S, Dölken L, Stindt J, Reinhard H, Wiek C, Hanenberg H, Koszinowski UH, Momburg F, Hengel H.

J Virol. 2011 Apr;85(7):3473-85. doi: 10.1128/JVI.01923-10. Epub 2011 Jan 19.

38.

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast.

Miller C, Schwalb B, Maier K, Schulz D, Dümcke S, Zacher B, Mayer A, Sydow J, Marcinowski L, Dölken L, Martin DE, Tresch A, Cramer P.

Mol Syst Biol. 2011 Jan 4;7:458. doi: 10.1038/msb.2010.112.

39.

Cytomegalovirus microRNAs facilitate persistent virus infection in salivary glands.

Dölken L, Krmpotic A, Kothe S, Tuddenham L, Tanguy M, Marcinowski L, Ruzsics Z, Elefant N, Altuvia Y, Margalit H, Koszinowski UH, Jonjic S, Pfeffer S.

PLoS Pathog. 2010 Oct 14;6(10):e1001150. doi: 10.1371/journal.ppat.1001150.

40.

Dominant negative mutants of the murine cytomegalovirus M53 gene block nuclear egress and inhibit capsid maturation.

Popa M, Ruzsics Z, Lötzerich M, Dölken L, Buser C, Walther P, Koszinowski UH.

J Virol. 2010 Sep;84(18):9035-46. doi: 10.1128/JVI.00681-10. Epub 2010 Jul 7.

41.

The phosphoproteome of toll-like receptor-activated macrophages.

Weintz G, Olsen JV, Frühauf K, Niedzielska M, Amit I, Jantsch J, Mages J, Frech C, Dölken L, Mann M, Lang R.

Mol Syst Biol. 2010 Jun 8;6:371. doi: 10.1038/msb.2010.29.

42.

A spread-deficient cytomegalovirus for assessment of first-target cells in vaccination.

Mohr CA, Arapovic J, Mühlbach H, Panzer M, Weyn A, Dölken L, Krmpotic A, Voehringer D, Ruzsics Z, Koszinowski U, Sacher T.

J Virol. 2010 Aug;84(15):7730-42. doi: 10.1128/JVI.02696-09. Epub 2010 May 12.

43.

Systematic analysis of viral and cellular microRNA targets in cells latently infected with human gamma-herpesviruses by RISC immunoprecipitation assay.

Dölken L, Malterer G, Erhard F, Kothe S, Friedel CC, Suffert G, Marcinowski L, Motsch N, Barth S, Beitzinger M, Lieber D, Bailer SM, Hoffmann R, Ruzsics Z, Kremmer E, Pfeffer S, Zimmer R, Koszinowski UH, Grässer F, Meister G, Haas J.

Cell Host Microbe. 2010 Apr 22;7(4):324-34. doi: 10.1016/j.chom.2010.03.008.

44.

HALO--a Java framework for precise transcript half-life determination.

Friedel CC, Kaufmann S, Dölken L, Zimmer R.

Bioinformatics. 2010 May 1;26(9):1264-6. doi: 10.1093/bioinformatics/btq117. Epub 2010 Mar 17.

PMID:
20299326
45.

Post-transcriptional regulation of miR-27 in murine cytomegalovirus infection.

Buck AH, Perot J, Chisholm MA, Kumar DS, Tuddenham L, Cognat V, Marcinowski L, Dölken L, Pfeffer S.

RNA. 2010 Feb;16(2):307-15. doi: 10.1261/rna.1819210. Epub 2010 Jan 4.

46.

Metabolic tagging and purification of nascent RNA: implications for transcriptomics.

Friedel CC, Dölken L.

Mol Biosyst. 2009 Nov;5(11):1271-8. doi: 10.1039/b911233b. Epub 2009 Aug 26. Review.

PMID:
19823741
47.

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life.

Friedel CC, Dölken L, Ruzsics Z, Koszinowski UH, Zimmer R.

Nucleic Acids Res. 2009 Sep;37(17):e115. doi: 10.1093/nar/gkp542. Epub 2009 Jun 26.

48.

All for one and one for all: herpesviral microRNAs close in on their prey.

Dölken L, Jonjic S.

Cell Host Microbe. 2009 Apr 23;5(4):315-7. doi: 10.1016/j.chom.2009.03.009.

49.

Cytomegalovirus microRNAs.

Dölken L, Pfeffer S, Koszinowski UH.

Virus Genes. 2009 Jun;38(3):355-64. doi: 10.1007/s11262-009-0347-0. Epub 2009 Mar 17. Review.

PMID:
19291384
50.

Small noncoding RNA: novel targets for antiviral therapy.

Dölken L, Haas J.

Future Microbiol. 2008 Dec;3(6):585-8. doi: 10.2217/17460913.3.6.585. No abstract available.

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