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Items: 14

1.

Mapping DNA damage-dependent genetic interactions in yeast via party mating and barcode fusion genetics.

Díaz-Mejía JJ, Celaj A, Mellor JC, Coté A, Balint A, Ho B, Bansal P, Shaeri F, Gebbia M, Weile J, Verby M, Karkhanina A, Zhang Y, Wong C, Rich J, Prendergast D, Gupta G, Öztürk S, Durocher D, Brown GW, Roth FP.

Mol Syst Biol. 2018 May 28;14(5):e7985. doi: 10.15252/msb.20177985.

2.

The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence.

Hansen AM, Chaerkady R, Sharma J, Díaz-Mejía JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A.

PLoS Pathog. 2013;9(6):e1003403. doi: 10.1371/journal.ppat.1003403. Epub 2013 Jun 13.

3.

Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.

Babu M, Díaz-Mejía JJ, Vlasblom J, Gagarinova A, Phanse S, Graham C, Yousif F, Ding H, Xiong X, Nazarians-Armavil A, Alamgir M, Ali M, Pogoutse O, Pe'er A, Arnold R, Michaut M, Parkinson J, Golshani A, Whitfield C, Wodak SJ, Moreno-Hagelsieb G, Greenblatt JF, Emili A.

PLoS Genet. 2011 Nov;7(11):e1002377. doi: 10.1371/journal.pgen.1002377. Epub 2011 Nov 17.

4.

Network-based function prediction and interactomics: the case for metabolic enzymes.

Janga SC, Díaz-Mejía JJ, Moreno-Hagelsieb G.

Metab Eng. 2011 Jan;13(1):1-10. doi: 10.1016/j.ymben.2010.07.001. Epub 2010 Jul 21. Review.

PMID:
20654726
5.

Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris.

Salazar E, Díaz-Mejía JJ, Moreno-Hagelsieb G, Martínez-Batallar G, Mora Y, Mora J, Encarnación S.

Appl Environ Microbiol. 2010 Jul;76(13):4510-20. doi: 10.1128/AEM.02007-09. Epub 2010 May 7.

6.

Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes.

Babu M, Musso G, Díaz-Mejía JJ, Butland G, Greenblatt JF, Emili A.

Mol Biosyst. 2009 Dec;5(12):1439-55. doi: 10.1039/B907407d. Epub 2009 Jul 31. Review.

PMID:
19763343
7.

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.

Hu P, Janga SC, Babu M, Díaz-Mejía JJ, Butland G, Yang W, Pogoutse O, Guo X, Phanse S, Wong P, Chandran S, Christopoulos C, Nazarians-Armavil A, Nasseri NK, Musso G, Ali M, Nazemof N, Eroukova V, Golshani A, Paccanaro A, Greenblatt JF, Moreno-Hagelsieb G, Emili A.

PLoS Biol. 2009 Apr 28;7(4):e96. doi: 10.1371/journal.pbio.1000096.

8.

Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.

Díaz-Mejía JJ, Babu M, Emili A.

FEMS Microbiol Rev. 2009 Jan;33(1):66-97. doi: 10.1111/j.1574-6976.2008.00141.x. Epub 2008 Nov 27. Review.

9.

eSGA: E. coli synthetic genetic array analysis.

Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A.

Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239.

PMID:
18677321
10.

The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution.

Hernández-Montes G, Díaz-Mejía JJ, Pérez-Rueda E, Segovia L.

Genome Biol. 2008;9(6):R95. doi: 10.1186/gb-2008-9-6-r95. Epub 2008 Jun 9.

11.

An analysis of the evolutionary relationships of integron integrases, with emphasis on the prevalence of class 1 integrons in Escherichia coli isolates from clinical and environmental origins.

Díaz-Mejía JJ, Amábile-Cuevas CF, Rosas I, Souza V.

Microbiology. 2008 Jan;154(Pt 1):94-102. doi: 10.1099/mic.0.2007/008649-0.

PMID:
18174129
12.

A network perspective on the evolution of metabolism by gene duplication.

Díaz-Mejía JJ, Pérez-Rueda E, Segovia L.

Genome Biol. 2007;8(2):R26.

13.

Antibiotic resistance in oral commensal streptococci from healthy Mexicans and Cubans: resistance prevalence does not mirror antibiotic usage.

Díaz-Mejía JJ, Carbajal-Saucedo A, Amábile-Cuevas CF.

FEMS Microbiol Lett. 2002 Dec 17;217(2):173-6.

14.

Differential activities of the SoxR protein of Escherichia coli: SoxS is not required for gene activation under iron deprivation.

Fuentes AM, Díaz-Mejía JJ, Maldonado-Rodríguez R, Amábile-Cuevas CF.

FEMS Microbiol Lett. 2001 Jul 24;201(2):271-5.

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