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Chemiosmotic Energy Conservation in Dinoroseobacter shibae: Proton Translocation Driven by Aerobic Respiration, Denitrification, and Photosynthetic Light Reaction.

Kirchhoff C, Ebert M, Jahn D, Cypionka H.

Front Microbiol. 2018 May 9;9:903. doi: 10.3389/fmicb.2018.00903. eCollection 2018.


A Crispy Diet: Grazers of Achromatium oxaliferum in Lake Stechlin Sediments.

Schorn S, Cypionka H.

Microb Ecol. 2018 Oct;76(3):584-587. doi: 10.1007/s00248-018-1158-4. Epub 2018 Feb 28.


Labilibaculum manganireducens gen. nov., sp. nov. and Labilibaculum filiforme sp. nov., Novel Bacteroidetes Isolated from Subsurface Sediments of the Baltic Sea.

Vandieken V, Marshall IPG, Niemann H, Engelen B, Cypionka H.

Front Microbiol. 2018 Jan 5;8:2614. doi: 10.3389/fmicb.2017.02614. eCollection 2017.


Propidium ion enters viable cells with high membrane potential during live-dead staining.

Kirchhoff C, Cypionka H.

J Microbiol Methods. 2017 Nov;142:79-82. doi: 10.1016/j.mimet.2017.09.011. Epub 2017 Sep 18.


Community-like genome in single cells of the sulfur bacterium Achromatium oxaliferum.

Ionescu D, Bizic-Ionescu M, De Maio N, Cypionka H, Grossart HP.

Nat Commun. 2017 Sep 6;8(1):455. doi: 10.1038/s41467-017-00342-9.


Marinisporobacter balticus gen. nov., sp. nov., Desulfosporosinus nitroreducens sp. nov. and Desulfosporosinus fructosivorans sp. nov., new spore-forming bacteria isolated from subsurface sediments of the Baltic Sea.

Vandieken V, Niemann H, Engelen B, Cypionka H.

Int J Syst Evol Microbiol. 2017 Jun;67(6):1887-1893. doi: 10.1099/ijsem.0.001883. Epub 2017 Jun 20.


Draft Genome Sequence of Pseudoruegeria sp. SK021, a Representative of the Marine Roseobacter Group, Isolated from North Sea Sediment.

Pohlner M, Marshall I, Schreiber L, Cypionka H, Engelen B.

Genome Announc. 2017 Jun 15;5(24). pii: e00541-17. doi: 10.1128/genomeA.00541-17.


Boosted Membrane Potential as Bioenergetic Response to Anoxia in Dinoroseobacter shibae.

Kirchhoff C, Cypionka H.

Front Microbiol. 2017 Apr 20;8:695. doi: 10.3389/fmicb.2017.00695. eCollection 2017.


Modelling anaerobic digestion in a biogas reactor: ADM1 model development with lactate as an intermediate (Part I).

Satpathy P, Biernacki P, Uhlenhut F, Cypionka H, Steinigeweg S.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2016 Dec 5;51(14):1216-1225. Epub 2016 Aug 15.


Modelling anaerobic digestion in an industrial biogas digester: Application of lactate-including ADM1 model (Part II).

Satpathy P, Biernacki P, Cypionka H, Steinigeweg S.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2016 Dec 5;51(14):1226-1232. Epub 2016 Aug 15.


Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment.

Kanukollu S, Voget S, Pohlner M, Vandieken V, Petersen J, Kyrpides NC, Woyke T, Shapiro N, Göker M, Klenk HP, Cypionka H, Engelen B.

Stand Genomic Sci. 2016 Mar 12;11:25. doi: 10.1186/s40793-016-0143-0. eCollection 2016.


Distinct compositions of free-living, particle-associated and benthic communities of the Roseobacter group in the North Sea.

Kanukollu S, Wemheuer B, Herber J, Billerbeck S, Lucas J, Daniel R, Simon M, Cypionka H, Engelen B.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv145. doi: 10.1093/femsec/fiv145. Epub 2015 Nov 24.


Different substrates and starter inocula govern microbial community structures in biogas reactors.

Satpathy P, Steinigeweg S, Cypionka H, Engelen B.

Environ Technol. 2016;37(11):1441-50. doi: 10.1080/09593330.2015.1118559. Epub 2015 Dec 17.


Temperature and pressure adaptation of a sulfate reducer from the deep subsurface.

Fichtel K, Logemann J, Fichtel J, Rullkötter J, Cypionka H, Engelen B.

Front Microbiol. 2015 Oct 6;6:1078. doi: 10.3389/fmicb.2015.01078. eCollection 2015.


Oxidative stress and starvation in Dinoroseobacter shibae: the role of extrachromosomal elements.

Soora M, Tomasch J, Wang H, Michael V, Petersen J, Engelen B, Wagner-Döbler I, Cypionka H.

Front Microbiol. 2015 Mar 25;6:233. doi: 10.3389/fmicb.2015.00233. eCollection 2015.


High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments.

Engelhardt T, Kallmeyer J, Cypionka H, Engelen B.

ISME J. 2014 Jul;8(7):1503-9. doi: 10.1038/ismej.2013.245. Epub 2014 Jan 16.


Light enhances survival of Dinoroseobacter shibae during long-term starvation.

Soora M, Cypionka H.

PLoS One. 2013 Dec 30;8(12):e83960. doi: 10.1371/journal.pone.0083960. eCollection 2013.


Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein.

Riedel T, Gómez-Consarnau L, Tomasch J, Martin M, Jarek M, González JM, Spring S, Rohlfs M, Brinkhoff T, Cypionka H, Göker M, Fiebig A, Klein J, Goesmann A, Fuhrman JA, Wagner-Döbler I.

PLoS One. 2013;8(3):e57487. doi: 10.1371/journal.pone.0057487. Epub 2013 Mar 4.


Desulfofrigus sp. prevails in sulfate-reducing dilution cultures from sediments of the Benguela upwelling area.

Kraft B, Engelen B, Goldhammer T, Lin YS, Cypionka H, Könneke M.

FEMS Microbiol Ecol. 2013 Apr;84(1):86-97. doi: 10.1111/1574-6941.12039. Epub 2012 Dec 4.


Biogeography of Rhizobium radiobacter and distribution of associated temperate phages in deep subseafloor sediments.

Engelhardt T, Sahlberg M, Cypionka H, Engelen B.

ISME J. 2013 Jan;7(1):199-209. doi: 10.1038/ismej.2012.92. Epub 2012 Aug 2.


Isolation of sulfate-reducing bacteria from sediments above the deep-subseafloor aquifer.

Fichtel K, Mathes F, Könneke M, Cypionka H, Engelen B.

Front Microbiol. 2012 Feb 20;3:65. doi: 10.3389/fmicb.2012.00065. eCollection 2012.


Identifying fermenting bacteria in anoxic tidal-flat sediments by a combination of microcalorimetry and ribosome-based stable-isotope probing.

Graue J, Kleindienst S, Lueders T, Cypionka H, Engelen B.

FEMS Microbiol Ecol. 2012 Jul;81(1):78-87. doi: 10.1111/j.1574-6941.2011.01282.x. Epub 2012 Jan 9.


Degradation of cyanobacterial biomass in anoxic tidal-flat sediments: a microcosm study of metabolic processes and community changes.

Graue J, Engelen B, Cypionka H.

ISME J. 2012 Mar;6(3):660-9. doi: 10.1038/ismej.2011.120. Epub 2011 Sep 15.


Induction of prophages from deep-subseafloor bacteria.

Engelhardt T, Sahlberg M, Cypionka H, Engelen B.

Environ Microbiol Rep. 2011 Aug;3(4):459-65. doi: 10.1111/j.1758-2229.2010.00232.x. Epub 2011 Jan 17.


Influence of light and anoxia on chemiosmotic energy conservation in Dinoroseobacter shibae.

Holert J, Hahnke S, Cypionka H.

Environ Microbiol Rep. 2011 Feb;3(1):136-141.


Acetogens and acetoclastic methanosarcinales govern methane formation in abandoned coal mines.

Beckmann S, Lueders T, Krüger M, von Netzer F, Engelen B, Cypionka H.

Appl Environ Microbiol. 2011 Jun;77(11):3749-56. doi: 10.1128/AEM.02818-10. Epub 2011 Apr 1.


Constitutive expression of the proteorhodopsin gene by a flavobacterium strain representative of the proteorhodopsin-producing microbial community in the North Sea.

Riedel T, Tomasch J, Buchholz I, Jacobs J, Kollenberg M, Gerdts G, Wichels A, Brinkhoff T, Cypionka H, Wagner-Döbler I.

Appl Environ Microbiol. 2010 May;76(10):3187-97. doi: 10.1128/AEM.02971-09. Epub 2010 Mar 19.


Tateyamaria pelophila sp. nov., a facultatively anaerobic alphaproteobacterium isolated from tidal-flat sediment, and emended descriptions of the genus Tateyamaria and of Tateyamaria omphalii.

Sass H, Köpke B, Rütters H, Feuerlein T, Dröge S, Cypionka H, Engelen B.

Int J Syst Evol Microbiol. 2010 Aug;60(Pt 8):1770-7. doi: 10.1099/ijs.0.013524-0. Epub 2009 Sep 11.


The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

Wagner-Döbler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M.

ISME J. 2010 Jan;4(1):61-77. doi: 10.1038/ismej.2009.94. Epub 2009 Sep 10.


Desulfopila inferna sp. nov., a sulfate-reducing bacterium isolated from the subsurface of a tidal sand-flat.

Gittel A, Seidel M, Kuever J, Galushko AS, Cypionka H, Könneke M.

Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1626-30. doi: 10.1099/ijs.0.015644-0. Epub 2009 Aug 28.


Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis.

Gittel A, Mussmann M, Sass H, Cypionka H, Könneke M.

Environ Microbiol. 2008 Oct;10(10):2645-58. doi: 10.1111/j.1462-2920.2008.01686.x. Epub 2008 Jul 8.


Two distinct Photobacterium populations thrive in ancient Mediterranean sapropels.

Süss J, Herrmann K, Seidel M, Cypionka H, Engelen B, Sass H.

Microb Ecol. 2008 Apr;55(3):371-83. Epub 2007 Sep 16.


Methane and sulfate profiles within the subsurface of a tidal flat are reflected by the distribution of sulfate-reducing bacteria and methanogenic archaea.

Wilms R, Sass H, Köpke B, Cypionka H, Engelen B.

FEMS Microbiol Ecol. 2007 Mar;59(3):611-21. Epub 2006 Oct 24.


Widespread distribution and high abundance of Rhizobium radiobacter within Mediterranean subsurface sediments.

Süss J, Schubert K, Sass H, Cypionka H, Overmann J, Engelen B.

Environ Microbiol. 2006 Oct;8(10):1753-63.


Specific bacterial, archaeal, and eukaryotic communities in tidal-flat sediments along a vertical profile of several meters.

Wilms R, Sass H, Köpke B, Köster J, Cypionka H, Engelen B.

Appl Environ Microbiol. 2006 Apr;72(4):2756-64.


Deep biosphere-related bacteria within the subsurface of tidal flat sediments.

Wilms R, Köpke B, Sass H, Chang TS, Cypionka H, Engelen B.

Environ Microbiol. 2006 Apr;8(4):709-19.


Microbial diversity in coastal subsurface sediments: a cultivation approach using various electron acceptors and substrate gradients.

Köpke B, Wilms R, Engelen B, Cypionka H, Sass H.

Appl Environ Microbiol. 2005 Dec;71(12):7819-30.


Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods.

Süss J, Engelen B, Cypionka H, Sass H.

FEMS Microbiol Ecol. 2004 Dec 27;51(1):109-21.


Crystal ball. The physiological challenge.

Cypionka H.

Environ Microbiol. 2005 Apr;7(4):472. No abstract available.


Distributions of microbial activities in deep subseafloor sediments.

D'Hondt S, Jørgensen BB, Miller DJ, Batzke A, Blake R, Cragg BA, Cypionka H, Dickens GR, Ferdelman T, Hinrichs KU, Holm NG, Mitterer R, Spivack A, Wang G, Bekins B, Engelen B, Ford K, Gettemy G, Rutherford SD, Sass H, Skilbeck CG, Aiello IW, Guèrin G, House CH, Inagaki F, Meister P, Naehr T, Niitsuma S, Parkes RJ, Schippers A, Smith DC, Teske A, Wiegel J, Padilla CN, Acosta JL.

Science. 2004 Dec 24;306(5705):2216-21.


Desulfosporomusa polytropa gen. nov., sp. nov., a novel sulfate-reducing bacterium from sediments of an oligotrophic lake.

Sass H, Overmann J, Rütters H, Babenzien HD, Cypionka H.

Arch Microbiol. 2004 Oct;182(2-3):204-11. Epub 2004 Aug 31.


Distribution of Nevskia ramosa and other rosette-forming neustonic bacteria.

Pladdies T, Babenzien HD, Cypionka H.

Microb Ecol. 2004 Apr;47(3):218-23. Epub 2004 Apr 2.


Aeromicrobium marinum sp. nov., an abundant pelagic bacterium isolated from the German Wadden Sea.

Bruns A, Philipp H, Cypionka H, Brinkhoff T.

Int J Syst Evol Microbiol. 2003 Nov;53(Pt 6):1917-23.


Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplankton.

Bruns A, Nübel U, Cypionka H, Overmann J.

Appl Environ Microbiol. 2003 Apr;69(4):1980-9.


Ongoing modification of Mediterranean Pleistocene sapropels mediated by prokaryotes.

Coolen MJ, Cypionka H, Sass AM, Sass H, Overmann J.

Science. 2002 Jun 28;296(5577):2407-10.


Desulfobulbus mediterraneus sp. nov., a sulfate-reducing bacterium growing on mono- and disaccharides.

Sass A, Rütters H, Cypionka H, Sass H.

Arch Microbiol. 2002 Jun;177(6):468-74. Epub 2002 Apr 3.


Growth and chemosensory behavior of sulfate-reducing bacteria in oxygen-sulfide gradients.

Sass AM, Eschemann A, Kühl M, Thar R, Sass H, Cypionka H.

FEMS Microbiol Ecol. 2002 Apr 1;40(1):47-54. doi: 10.1111/j.1574-6941.2002.tb00935.x.

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