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Items: 31

1.

Dense neural networks for predicting chromatin conformation.

Farré P, Heurteau A, Cuvier O, Emberly E.

BMC Bioinformatics. 2018 Oct 11;19(1):372. doi: 10.1186/s12859-018-2286-z.

2.

Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution.

Mourad R, Ginalski K, Legube G, Cuvier O.

Genome Biol. 2018 Mar 15;19(1):34. doi: 10.1186/s13059-018-1411-7.

3.

TAD-free analysis of architectural proteins and insulators.

Mourad R, Cuvier O.

Nucleic Acids Res. 2018 Mar 16;46(5):e27. doi: 10.1093/nar/gkx1246.

4.

Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach.

Mourad R, Li L, Cuvier O.

PLoS Comput Biol. 2017 May 23;13(5):e1005538. doi: 10.1371/journal.pcbi.1005538. eCollection 2017 May.

5.

Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells.

Cuvier O, Fierz B.

Nat Rev Genet. 2017 Aug;18(8):457-472. doi: 10.1038/nrg.2017.28. Epub 2017 May 22. Review.

PMID:
28529337
6.

Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation.

Mourad R, Cuvier O.

PLoS Comput Biol. 2016 May 20;12(5):e1004908. doi: 10.1371/journal.pcbi.1004908. eCollection 2016 May.

7.

Predicting the spatial organization of chromosomes using epigenetic data.

Mourad R, Cuvier O.

Genome Biol. 2015 Aug 29;16:182. doi: 10.1186/s13059-015-0752-8.

8.

Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data.

Saberi S, Farré P, Cuvier O, Emberly E.

BMC Bioinformatics. 2015 May 23;16:171. doi: 10.1186/s12859-015-0584-2.

9.

Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes.

Stadelmayer B, Micas G, Gamot A, Martin P, Malirat N, Koval S, Raffel R, Sobhian B, Severac D, Rialle S, Parrinello H, Cuvier O, Benkirane M.

Nat Commun. 2014 Nov 20;5:5531. doi: 10.1038/ncomms6531.

10.

Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.

Vogelmann J, Le Gall A, Dejardin S, Allemand F, Gamot A, Labesse G, Cuvier O, Nègre N, Cohen-Gonsaud M, Margeat E, Nöllmann M.

PLoS Genet. 2014 Aug 28;10(8):e1004544. doi: 10.1371/journal.pgen.1004544. eCollection 2014 Aug.

11.

Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes.

Lhoumaud P, Hennion M, Gamot A, Cuddapah S, Queille S, Liang J, Micas G, Morillon P, Urbach S, Bouchez O, Severac D, Emberly E, Zhao K, Cuvier O.

EMBO J. 2014 Jul 17;33(14):1599-613. doi: 10.15252/embj.201385965. Epub 2014 Jun 10.

12.

Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.

Liang J, Lacroix L, Gamot A, Cuddapah S, Queille S, Lhoumaud P, Lepetit P, Martin PG, Vogelmann J, Court F, Hennion M, Micas G, Urbach S, Bouchez O, Nöllmann M, Zhao K, Emberly E, Cuvier O.

Mol Cell. 2014 Feb 20;53(4):672-81. doi: 10.1016/j.molcel.2013.12.029. Epub 2014 Jan 30.

13.

Roles of chromatin insulator proteins in higher-order chromatin organization and transcription regulation.

Vogelmann J, Valeri A, Guillou E, Cuvier O, Nollmann M.

Nucleus. 2011 Sep-Oct;2(5):358-69. doi: 10.4161/nucl.2.5.17860. Epub 2011 Sep 1. Review.

14.

Gene dates, parties and galas. Symposium on Chromatin Dynamics and Higher Order Organization.

Chang HY, Cuvier O, Dekker J.

EMBO Rep. 2009 Jul;10(7):689-93. doi: 10.1038/embor.2009.136. Epub 2009 Jun 12. No abstract available.

15.

Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription.

Jiang N, Emberly E, Cuvier O, Hart CM.

Mol Cell Biol. 2009 Jul;29(13):3556-68. doi: 10.1128/MCB.01748-08. Epub 2009 Apr 20.

16.

BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites.

Emberly E, Blattes R, Schuettengruber B, Hennion M, Jiang N, Hart CM, Käs E, Cuvier O.

PLoS Biol. 2008 Dec 23;6(12):2896-910. doi: 10.1371/journal.pbio.0060327. Erratum in: PLoS Biol. 2009 Jun;7(6). doi: 10.1371/annotation/897f96fc-db2e-4ee5-b77b-4ad95768da47.

17.

A topoisomerase II-dependent mechanism for resetting replicons at the S-M-phase transition.

Cuvier O, Stanojcic S, Lemaitre JM, Mechali M.

Genes Dev. 2008 Apr 1;22(7):860-5. doi: 10.1101/gad.445108.

18.

Intrinsic ubiquitination activity of PCAF controls the stability of the oncoprotein Hdm2.

Linares LK, Kiernan R, Triboulet R, Chable-Bessia C, Latreille D, Cuvier O, Lacroix M, Le Cam L, Coux O, Benkirane M.

Nat Cell Biol. 2007 Mar;9(3):331-8. Epub 2007 Feb 11.

PMID:
17293853
19.

Displacement of D1, HP1 and topoisomerase II from satellite heterochromatin by a specific polyamide.

Blattes R, Monod C, Susbielle G, Cuvier O, Wu JH, Hsieh TS, Laemmli UK, Käs E.

EMBO J. 2006 Jun 7;25(11):2397-408. Epub 2006 May 4.

20.
21.

Recruitment of Drosophila Polycomb group proteins to chromatin by DSP1.

Déjardin J, Rappailles A, Cuvier O, Grimaud C, Decoville M, Locker D, Cavalli G.

Nature. 2005 Mar 24;434(7032):533-8.

PMID:
15791260
22.
23.

A hypophosphorylated form of RPA34 is a specific component of pre-replication centers.

Françon P, Lemaître JM, Dreyer C, Maiorano D, Cuvier O, Méchali M.

J Cell Sci. 2004 Oct 1;117(Pt 21):4909-20.

24.

A role of topoisomerase II in linking DNA replication to chromosome condensation.

Cuvier O, Hirano T.

J Cell Biol. 2003 Mar 3;160(5):645-55. Epub 2003 Feb 25.

25.

Modification of position-effect variegation by competition for binding to Drosophila satellites.

Monod C, Aulner N, Cuvier O, Käs E.

EMBO Rep. 2002 Aug;3(8):747-52. Epub 2002 Jul 15.

26.

Identification of a multicopy chromatin boundary element at the borders of silenced chromosomal domains.

Cuvier O, Hart CM, Käs E, Laemmli UK.

Chromosoma. 2002 Feb;110(8):519-31.

PMID:
12068969
27.

The AT-hook protein D1 is essential for Drosophila melanogaster development and is implicated in position-effect variegation.

Aulner N, Monod C, Mandicourt G, Jullien D, Cuvier O, Sall A, Janssen S, Laemmli UK, Käs E.

Mol Cell Biol. 2002 Feb;22(4):1218-32.

28.

Chromosome condensation by a human condensin complex in Xenopus egg extracts.

Kimura K, Cuvier O, Hirano T.

J Biol Chem. 2001 Feb 23;276(8):5417-20. Epub 2001 Jan 2.

29.
30.
31.

Identification of a class of chromatin boundary elements.

Cuvier O, Hart CM, Laemmli UK.

Mol Cell Biol. 1998 Dec;18(12):7478-86.

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