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Items: 1 to 50 of 101

1.

Understanding trait diversity associated with crassulacean acid metabolism (CAM).

Niechayev NA, Pereira PN, Cushman JC.

Curr Opin Plant Biol. 2019 Jul 5;49:74-85. doi: 10.1016/j.pbi.2019.06.004. [Epub ahead of print] Review.

PMID:
31284077
2.

Crassulacean Acid Metabolism Abiotic Stress-Responsive Transcription Factors: a Potential Genetic Engineering Approach for Improving Crop Tolerance to Abiotic Stress.

Amin AB, Rathnayake KN, Yim WC, Garcia TM, Wone B, Cushman JC, Wone BWM.

Front Plant Sci. 2019 Feb 22;10:129. doi: 10.3389/fpls.2019.00129. eCollection 2019.

3.

Laying the Foundation for Crassulacean Acid Metabolism (CAM) Biodesign: Expression of the C4 Metabolism Cycle Genes of CAM in Arabidopsis.

Lim SD, Lee S, Choi WG, Yim WC, Cushman JC.

Front Plant Sci. 2019 Feb 11;10:101. doi: 10.3389/fpls.2019.00101. eCollection 2019.

4.

Simultaneous chloroplast, mitochondria isolation and mitochondrial protein preparation for two-dimensional electrophoresis analysis of Ice plant leaves under well watered and water-deficit stressed treatments.

Kim Hong HT, Bich Phuong TT, Thu Thuy NT, Wheatley MD, Cushman JC.

Protein Expr Purif. 2019 Mar;155:86-94. doi: 10.1016/j.pep.2018.11.010. Epub 2018 Dec 1.

PMID:
30508586
5.

Quantitative ROS bioreporters: A robust toolkit for studying biological roles of ROS in response to abiotic and biotic stresses.

Lim SD, Kim SH, Gilroy S, Cushman JC, Choi WG.

Physiol Plant. 2019 Feb;165(2):356-368. doi: 10.1111/ppl.12866. Epub 2018 Dec 6.

PMID:
30411793
6.

Identification of Genes Encoding Enzymes Catalyzing the Early Steps of Carrot Polyacetylene Biosynthesis.

Busta L, Yim WC, LaBrant EW, Wang P, Grimes L, Malyszka K, Cushman JC, Santos P, Kosma DK, Cahoon EB.

Plant Physiol. 2018 Dec;178(4):1507-1521. doi: 10.1104/pp.18.01195. Epub 2018 Oct 17.

7.

Perspectives on the basic and applied aspects of crassulacean acid metabolism (CAM) research.

Liu D, Palla KJ, Hu R, Moseley RC, Mendoza C, Chen M, Abraham PE, Labbé JL, Kalluri UC, Tschaplinski TJ, Cushman JC, Borland AM, Tuskan GA, Yang X.

Plant Sci. 2018 Sep;274:394-401. doi: 10.1016/j.plantsci.2018.06.012. Epub 2018 Jun 19. Review.

PMID:
30080627
8.

A Vitis vinifera basic helix-loop-helix transcription factor enhances plant cell size, vegetative biomass and reproductive yield.

Lim SD, Yim WC, Liu D, Hu R, Yang X, Cushman JC.

Plant Biotechnol J. 2018 Mar 9. doi: 10.1111/pbi.12898. [Epub ahead of print]

9.

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.

Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J, Heyduk K, Goodstein DM, Guo HB, Moseley RC, Fitzek E, Jawdy S, Zhang Z, Xie M, Hartwell J, Grimwood J, Abraham PE, Mewalal R, Beltrán JD, Boxall SF, Dever LV, Palla KJ, Albion R, Garcia T, Mayer JA, Don Lim S, Man Wai C, Peluso P, Van Buren R, De Paoli HC, Borland AM, Guo H, Chen JG, Muchero W, Yin Y, Jacobson DA, Tschaplinski TJ, Hettich RL, Ming R, Winter K, Leebens-Mack JH, Smith JAC, Cushman JC, Schmutz J, Tuskan GA.

Nat Commun. 2017 Dec 1;8(1):1899. doi: 10.1038/s41467-017-01491-7.

10.

An rbcL mRNA-binding protein is associated with C3 to C4 evolution and light-induced production of Rubisco in Flaveria.

Yerramsetty P, Agar EM, Yim WC, Cushman JC, Berry JO.

J Exp Bot. 2017 Jul 20;68(16):4635-4649. doi: 10.1093/jxb/erx264.

11.
12.

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple.

Wai CM, VanBuren R, Zhang J, Huang L, Miao W, Edger PP, Yim WC, Priest HD, Meyers BC, Mockler T, Smith JAC, Cushman JC, Ming R.

Plant J. 2017 Oct;92(1):19-30. doi: 10.1111/tpj.13630. Epub 2017 Aug 21.

13.

Divide and Conquer (DC) BLAST: fast and easy BLAST execution within HPC environments.

Yim WC, Cushman JC.

PeerJ. 2017 Jun 22;5:e3486. doi: 10.7717/peerj.3486. eCollection 2017.

14.

Sonic Hedgehog Signaling Regulates Myofibroblast Function during Alveolar Septum Formation in Murine Postnatal Lung.

Kugler MC, Loomis CA, Zhao Z, Cushman JC, Liu L, Munger JS.

Am J Respir Cell Mol Biol. 2017 Sep;57(3):280-293. doi: 10.1165/rcmb.2016-0268OC.

15.

Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics.

Yobi A, Schlauch KA, Tillett RL, Yim WC, Espinoza C, Wone BW, Cushman JC, Oliver MJ.

BMC Plant Biol. 2017 Mar 28;17(1):67. doi: 10.1186/s12870-017-1013-7.

16.

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave.

Abraham PE, Yin H, Borland AM, Weighill D, Lim SD, De Paoli HC, Engle N, Jones PC, Agh R, Weston DJ, Wullschleger SD, Tschaplinski T, Jacobson D, Cushman JC, Hettich RL, Tuskan GA, Yang X.

Nat Plants. 2016 Nov 21;2:16178. doi: 10.1038/nplants.2016.178.

PMID:
27869799
17.

Identification of Ice Plant (Mesembryanthemum crystallinum L.) MicroRNAs Using RNA-Seq and Their Putative Roles in High Salinity Responses in Seedlings.

Chiang CP, Yim WC, Sun YH, Ohnishi M, Mimura T, Cushman JC, Yen HE.

Front Plant Sci. 2016 Aug 9;7:1143. doi: 10.3389/fpls.2016.01143. eCollection 2016.

18.

Orchestration of carbohydrate processing for crassulacean acid metabolism.

Borland AM, Guo HB, Yang X, Cushman JC.

Curr Opin Plant Biol. 2016 Jun;31:118-24. doi: 10.1016/j.pbi.2016.04.001. Epub 2016 Apr 19. Review.

PMID:
27101569
19.

The pineapple genome and the evolution of CAM photosynthesis.

Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q.

Nat Genet. 2015 Dec;47(12):1435-42. doi: 10.1038/ng.3435. Epub 2015 Nov 2.

20.

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.

Yang X, Cushman JC, Borland AM, Edwards EJ, Wullschleger SD, Tuskan GA, Owen NA, Griffiths H, Smith JA, De Paoli HC, Weston DJ, Cottingham R, Hartwell J, Davis SC, Silvera K, Ming R, Schlauch K, Abraham P, Stewart JR, Guo HB, Albion R, Ha J, Lim SD, Wone BW, Yim WC, Garcia T, Mayer JA, Petereit J, Nair SS, Casey E, Hettich RL, Ceusters J, Ranjan P, Palla KJ, Yin H, Reyes-García C, Andrade JL, Freschi L, Beltrán JD, Dever LV, Boxall SF, Waller J, Davies J, Bupphada P, Kadu N, Winter K, Sage RF, Aguilar CN, Schmutz J, Jenkins J, Holtum JA.

New Phytol. 2015 Aug;207(3):491-504. doi: 10.1111/nph.13393. Review.

21.

Development and use of bioenergy feedstocks for semi-arid and arid lands.

Cushman JC, Davis SC, Yang X, Borland AM.

J Exp Bot. 2015 Jul;66(14):4177-93. doi: 10.1093/jxb/erv087. Epub 2015 Apr 1. Review.

PMID:
25873672
22.

Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy.

Borland AM, Wullschleger SD, Weston DJ, Hartwell J, Tuskan GA, Yang X, Cushman JC.

Plant Cell Environ. 2015 Sep;38(9):1833-49. doi: 10.1111/pce.12479. Epub 2014 Dec 15. Review.

23.

Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism.

Silvera K, Winter K, Rodriguez BL, Albion RL, Cushman JC.

J Exp Bot. 2014 Jul;65(13):3623-36. doi: 10.1093/jxb/eru234. Epub 2014 Jun 9.

24.

Interview with John C. Cushman.

Cushman JC.

Trends Plant Sci. 2014 May;19(5):274-5. doi: 10.1016/j.tplants.2014.03.003. Epub 2014 Apr 4. No abstract available.

PMID:
24704186
25.

Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities.

DePaoli HC, Borland AM, Tuskan GA, Cushman JC, Yang X.

J Exp Bot. 2014 Jul;65(13):3381-93. doi: 10.1093/jxb/eru038. Epub 2014 Feb 24. Review.

PMID:
24567493
26.

Engineering crassulacean acid metabolism to improve water-use efficiency.

Borland AM, Hartwell J, Weston DJ, Schlauch KA, Tschaplinski TJ, Tuskan GA, Yang X, Cushman JC.

Trends Plant Sci. 2014 May;19(5):327-38. doi: 10.1016/j.tplants.2014.01.006. Epub 2014 Feb 19. Review.

27.

Metabolic rates associated with membrane fatty acids in mice selected for increased maximal metabolic rate.

Wone BW, Donovan ER, Cushman JC, Hayes JP.

Comp Biochem Physiol A Mol Integr Physiol. 2013 May;165(1):70-8. doi: 10.1016/j.cbpa.2013.02.010. Epub 2013 Feb 16.

28.

Metabolomic profiling in Selaginella lepidophylla at various hydration states provides new insights into the mechanistic basis of desiccation tolerance.

Yobi A, Wone BW, Xu W, Alexander DC, Guo L, Ryals JA, Oliver MJ, Cushman JC.

Mol Plant. 2013 Mar;6(2):369-85. doi: 10.1093/mp/sss155. Epub 2012 Dec 13.

29.

Comparative metabolic profiling between desiccation-sensitive and desiccation-tolerant species of Selaginella reveals insights into the resurrection trait.

Yobi A, Wone BW, Xu W, Alexander DC, Guo L, Ryals JA, Oliver MJ, Cushman JC.

Plant J. 2012 Dec;72(6):983-99. doi: 10.1111/tpj.12008. Epub 2012 Oct 19.

30.
31.

The Vitis vinifera C-repeat binding protein 4 (VvCBF4) transcriptional factor enhances freezing tolerance in wine grape.

Tillett RL, Wheatley MD, Tattersall EA, Schlauch KA, Cramer GR, Cushman JC.

Plant Biotechnol J. 2012 Jan;10(1):105-24. doi: 10.1111/j.1467-7652.2011.00648.x. Epub 2011 Sep 13.

32.

Expressed sequence tag (EST) profiling in hyper saline shocked Dunaliella salina reveals high expression of protein synthetic apparatus components.

Alkayal F, Albion RL, Tillett RL, Hathwaik LT, Lemos MS, Cushman JC.

Plant Sci. 2010 Nov;179(5):437-49. doi: 10.1016/j.plantsci.2010.07.001. Epub 2010 Jul 14.

PMID:
21802602
33.

Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets.

Tillett RL, Ergül A, Albion RL, Schlauch KA, Cramer GR, Cushman JC.

BMC Plant Biol. 2011 May 18;11:86. doi: 10.1186/1471-2229-11-86.

34.

A sister group contrast using untargeted global metabolomic analysis delineates the biochemical regulation underlying desiccation tolerance in Sporobolus stapfianus.

Oliver MJ, Guo L, Alexander DC, Ryals JA, Wone BW, Cushman JC.

Plant Cell. 2011 Apr;23(4):1231-48. doi: 10.1105/tpc.110.082800. Epub 2011 Apr 5.

35.

Calcium-dependent protein kinases from Arabidopsis show substrate specificity differences in an analysis of 103 substrates.

Curran A, Chang IF, Chang CL, Garg S, Miguel RM, Barron YD, Li Y, Romanowsky S, Cushman JC, Gribskov M, Harmon AC, Harper JF.

Front Plant Sci. 2011 Aug 30;2:36. doi: 10.3389/fpls.2011.00036. eCollection 2011.

36.

Water deficit increases stilbene metabolism in Cabernet Sauvignon berries.

Deluc LG, Decendit A, Papastamoulis Y, Mérillon JM, Cushman JC, Cramer GR.

J Agric Food Chem. 2011 Jan 12;59(1):289-97. doi: 10.1021/jf1024888. Epub 2010 Dec 3.

37.

The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA.

Smith DR, Lee RW, Cushman JC, Magnuson JK, Tran D, Polle JE.

BMC Plant Biol. 2010 May 7;10:83. doi: 10.1186/1471-2229-10-83.

38.

Dehydration tolerance in plants.

Oliver MJ, Cushman JC, Koster KL.

Methods Mol Biol. 2010;639:3-24. doi: 10.1007/978-1-60761-702-0_1.

PMID:
20387037
39.

Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana.

Chang IF, Curran A, Woolsey R, Quilici D, Cushman JC, Mittler R, Harmon A, Harper JF.

Proteomics. 2009 Jun;9(11):2967-85. doi: 10.1002/pmic.200800445.

40.

Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay.

Deluc LG, Quilici DR, Decendit A, Grimplet J, Wheatley MD, Schlauch KA, Mérillon JM, Cushman JC, Cramer GR.

BMC Genomics. 2009 May 8;10:212. doi: 10.1186/1471-2164-10-212.

41.

Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions.

Grimplet J, Wheatley MD, Jouira HB, Deluc LG, Cramer GR, Cushman JC.

Proteomics. 2009 May;9(9):2503-28. doi: 10.1002/pmic.200800158.

42.

Crassulacean acid metabolism and epiphytism linked to adaptive radiations in the Orchidaceae.

Silvera K, Santiago LS, Cushman JC, Winter K.

Plant Physiol. 2009 Apr;149(4):1838-47. doi: 10.1104/pp.108.132555. Epub 2009 Jan 30.

43.

Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis.

Uno Y, Rodriguez Milla MA, Maher E, Cushman JC.

Mol Genet Genomics. 2009 Apr;281(4):375-90. doi: 10.1007/s00438-008-0419-1. Epub 2009 Jan 8.

PMID:
19130088
44.

Annotating genes of known and unknown function by large-scale coexpression analysis.

Horan K, Jang C, Bailey-Serres J, Mittler R, Shelton C, Harper JF, Zhu JK, Cushman JC, Gollery M, Girke T.

Plant Physiol. 2008 May;147(1):41-57. doi: 10.1104/pp.108.117366. Epub 2008 Mar 19.

45.

Charting plant interactomes: possibilities and challenges.

Morsy M, Gouthu S, Orchard S, Thorneycroft D, Harper JF, Mittler R, Cushman JC.

Trends Plant Sci. 2008 Apr;13(4):183-91. doi: 10.1016/j.tplants.2008.01.006. Epub 2008 Mar 7. Review.

PMID:
18329319
46.

Isolation and characterization of mutants of common ice plant deficient in crassulacean acid metabolism.

Cushman JC, Agarie S, Albion RL, Elliot SM, Taybi T, Borland AM.

Plant Physiol. 2008 May;147(1):228-38. doi: 10.1104/pp.108.116889. Epub 2008 Mar 7.

47.

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM).

Cushman JC, Tillett RL, Wood JA, Branco JM, Schlauch KA.

J Exp Bot. 2008;59(7):1875-94. doi: 10.1093/jxb/ern008. Epub 2008 Mar 3.

PMID:
18319238
48.

Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development.

Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR.

BMC Genomics. 2007 Nov 22;8:429.

49.

Tissue-specific mRNA expression profiling in grape berry tissues.

Grimplet J, Deluc LG, Tillett RL, Wheatley MD, Schlauch KA, Cramer GR, Cushman JC.

BMC Genomics. 2007 Jun 21;8:187.

50.

Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling compared to osmotic and salinity stress.

Tattersall EA, Grimplet J, DeLuc L, Wheatley MD, Vincent D, Osborne C, Ergül A, Lomen E, Blank RR, Schlauch KA, Cushman JC, Cramer GR.

Funct Integr Genomics. 2007 Oct;7(4):317-33. Epub 2007 Jun 20.

PMID:
17578611

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