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Items: 1 to 50 of 61

1.

Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning.

Najafi F, Elsayed GF, Cao R, Pnevmatikakis E, Latham PE, Cunningham JP, Churchland AK.

Neuron. 2020 Jan 8;105(1):165-179.e8. doi: 10.1016/j.neuron.2019.09.045. Epub 2019 Nov 18.

PMID:
31753580
2.

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance.

Piper AM, Batovska J, Cogan NOI, Weiss J, Cunningham JP, Rodoni BC, Blacket MJ.

Gigascience. 2019 Aug 1;8(8). pii: giz092. doi: 10.1093/gigascience/giz092.

3.

Towards the neural population doctrine.

Saxena S, Cunningham JP.

Curr Opin Neurobiol. 2019 Apr;55:103-111. doi: 10.1016/j.conb.2019.02.002. Epub 2019 Mar 13. Review.

PMID:
30877963
4.

Behavioral and Physiological Evidence for Palp Detection of the Male-Specific Attractant Cuelure in the Queensland Fruit Fly (Bactrocera tryoni).

Verschut TA, Farnier K, Cunningham JP, Carlsson MA.

Front Physiol. 2018 Jul 26;9:990. doi: 10.3389/fphys.2018.00990. eCollection 2018.

5.

Conservation of preparatory neural events in monkey motor cortex regardless of how movement is initiated.

Lara AH, Elsayed GF, Zimnik AJ, Cunningham JP, Churchland MM.

Elife. 2018 Aug 22;7. pii: e31826. doi: 10.7554/eLife.31826.

6.

Different population dynamics in the supplementary motor area and motor cortex during reaching.

Lara AH, Cunningham JP, Churchland MM.

Nat Commun. 2018 Jul 16;9(1):2754. doi: 10.1038/s41467-018-05146-z.

7.

Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience.

Paninski L, Cunningham JP.

Curr Opin Neurobiol. 2018 Jun;50:232-241. doi: 10.1016/j.conb.2018.04.007. Review.

PMID:
29738986
8.

From laboratory to the field: consistent effects of experience on host location by the fruit fly parasitoid Diachasmimorpha kraussii (Hymenoptera: Braconidae).

Masry A, Cunningham JP, Clarke AR.

Insect Sci. 2019 Oct;26(5):863-872. doi: 10.1111/1744-7917.12587. Epub 2018 Apr 17.

PMID:
29505704
9.
10.

Motor Cortex Embeds Muscle-like Commands in an Untangled Population Response.

Russo AA, Bittner SR, Perkins SM, Seely JS, London BM, Lara AH, Miri A, Marshall NJ, Kohn A, Jessell TM, Abbott LF, Cunningham JP, Churchland MM.

Neuron. 2018 Feb 21;97(4):953-966.e8. doi: 10.1016/j.neuron.2018.01.004. Epub 2018 Feb 1.

11.

Two Gut-Associated Yeasts in a Tephritid Fruit Fly have Contrasting Effects on Adult Attraction and Larval Survival.

Piper AM, Farnier K, Linder T, Speight R, Cunningham JP.

J Chem Ecol. 2017 Sep;43(9):891-901. doi: 10.1007/s10886-017-0877-1. Epub 2017 Aug 23.

PMID:
28836040
12.

Structure in neural population recordings: an expected byproduct of simpler phenomena?

Elsayed GF, Cunningham JP.

Nat Neurosci. 2017 Sep;20(9):1310-1318. doi: 10.1038/nn.4617. Epub 2017 Aug 7.

13.

Behaviorally Selective Engagement of Short-Latency Effector Pathways by Motor Cortex.

Miri A, Warriner CL, Seely JS, Elsayed GF, Cunningham JP, Churchland MM, Jessell TM.

Neuron. 2017 Aug 2;95(3):683-696.e11. doi: 10.1016/j.neuron.2017.06.042. Epub 2017 Jul 20.

14.

Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1.

Seely JS, Kaufman MT, Ryu SI, Shenoy KV, Cunningham JP, Churchland MM.

PLoS Comput Biol. 2016 Nov 4;12(11):e1005164. doi: 10.1371/journal.pcbi.1005164. eCollection 2016 Nov.

15.

Reorganization between preparatory and movement population responses in motor cortex.

Elsayed GF, Lara AH, Kaufman MT, Churchland MM, Cunningham JP.

Nat Commun. 2016 Oct 27;7:13239. doi: 10.1038/ncomms13239.

16.

An improved culturing method for opiine fruit fly parasitoids and its application to parasitoid monitoring in the field.

Masry A, Furlong MJ, Clarke AR, Cunningham JP.

Insect Sci. 2018 Feb;25(1):99-108. doi: 10.1111/1744-7917.12403. Epub 2016 Nov 24.

PMID:
27650570
17.

Do Fruit Ripening Volatiles Enable Resource Specialism in Polyphagous Fruit Flies?

Cunningham JP, Carlsson MA, Villa TF, Dekker T, Clarke AR.

J Chem Ecol. 2016 Sep;42(9):931-940. Epub 2016 Sep 1.

PMID:
27586434
18.

Neuroprosthetic Decoder Training as Imitation Learning.

Merel J, Carlson D, Paninski L, Cunningham JP.

PLoS Comput Biol. 2016 May 18;12(5):e1004948. doi: 10.1371/journal.pcbi.1004948. eCollection 2016 May.

19.

Scaling Multidimensional Inference for Structured Gaussian Processes.

Gilboa E, Saatçi Y, Cunningham JP.

IEEE Trans Pattern Anal Mach Intell. 2015 Feb;37(2):424-36. doi: 10.1109/TPAMI.2013.192.

PMID:
26353252
20.

Single-trial dynamics of motor cortex and their applications to brain-machine interfaces.

Kao JC, Nuyujukian P, Ryu SI, Churchland MM, Cunningham JP, Shenoy KV.

Nat Commun. 2015 Jul 29;6:7759. doi: 10.1038/ncomms8759.

21.

Encoder-decoder optimization for brain-computer interfaces.

Merel J, Pianto DM, Cunningham JP, Paninski L.

PLoS Comput Biol. 2015 Jun 1;11(6):e1004288. doi: 10.1371/journal.pcbi.1004288. eCollection 2015 Jun.

22.

A Dynamical Basis Set for Generating Reaches.

Churchland MM, Cunningham JP.

Cold Spring Harb Symp Quant Biol. 2014;79:67-80. doi: 10.1101/sqb.2014.79.024703. Epub 2015 Apr 7. Review.

PMID:
25851506
23.

Bees at war: interspecific battles and nest usurpation in stingless bees.

Cunningham JP, Hereward JP, Heard TA, De Barro PJ, West SA.

Am Nat. 2014 Dec;184(6):777-86. doi: 10.1086/678399. Epub 2014 Oct 16.

PMID:
25438177
24.

Is routine chest radiograph necessary after chest tube removal?

Cunningham JP, Knott EM, Gasior AC, Juang D, Snyder CL, St Peter SD, Ostlie DJ.

J Pediatr Surg. 2014 Oct;49(10):1493-5. doi: 10.1016/j.jpedsurg.2014.01.004. Epub 2014 Jan 28.

PMID:
25280653
25.

Analyzing neural data at huge scale.

Cunningham JP.

Nat Methods. 2014 Sep;11(9):911-2. doi: 10.1038/nmeth.3071.

PMID:
25166871
26.

Dimensionality reduction for large-scale neural recordings.

Cunningham JP, Yu BM.

Nat Neurosci. 2014 Nov;17(11):1500-9. doi: 10.1038/nn.3776. Epub 2014 Aug 24. Review.

27.

Understanding heliothine (Lepidoptera: Heliothinae) pests: what is a host plant?

Cunningham JP, Zalucki MP.

J Econ Entomol. 2014 Jun;107(3):881-96. Review.

PMID:
25026644
28.

Image interpolation and denoising for division of focal plane sensors using Gaussian processes.

Gilboa E, Cunningham JP, Nehorai A, Gruev V.

Opt Express. 2014 Jun 16;22(12):15277-91. doi: 10.1364/OE.22.015277.

PMID:
24977618
29.

A Novel Method for Curvefitting the Stretched Exponential Function to Experimental Data.

June RK, Cunningham JP, Fyhrie DP.

Biomed Eng Res. 2013 Dec 1;2(4):153-158.

30.

A brain machine interface control algorithm designed from a feedback control perspective.

Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Yu BM, Fan JM, Ryu SI, Shenoy KV.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:1318-22. doi: 10.1109/EMBC.2012.6346180.

PMID:
23366141
31.

A high-performance neural prosthesis enabled by control algorithm design.

Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Yu BM, Fan JM, Churchland MM, Kaufman MT, Kao JC, Ryu SI, Shenoy KV.

Nat Neurosci. 2012 Dec;15(12):1752-7. doi: 10.1038/nn.3265. Epub 2012 Nov 18.

32.

Neural population dynamics during reaching.

Churchland MM, Cunningham JP, Kaufman MT, Foster JD, Nuyujukian P, Ryu SI, Shenoy KV.

Nature. 2012 Jul 5;487(7405):51-6. doi: 10.1038/nature11129.

33.

Surgical management of gallstone pancreatitis in children.

Knott EM, Gasior AC, Bikhchandani J, Cunningham JP, St Peter SD.

J Laparoendosc Adv Surg Tech A. 2012 Jun;22(5):501-4. doi: 10.1089/lap.2011.0514. Epub 2012 Apr 27.

PMID:
22540526
34.

No evidence for change in oviposition behaviour of Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae) after widespread adoption of transgenic insecticidal cotton.

Zalucki MP, Cunningham JP, Downes S, Ward P, Lange C, Meissle M, Schellhorn NA, Zalucki JM.

Bull Entomol Res. 2012 Aug;102(4):468-76. doi: 10.1017/S0007485311000848. Epub 2012 Feb 7.

PMID:
22314028
35.

Can mechanism help explain insect host choice?

Cunningham JP.

J Evol Biol. 2012 Feb;25(2):244-51. doi: 10.1111/j.1420-9101.2011.02435.x. Epub 2012 Jan 6. Review.

36.

An L₁-regularized logistic model for detecting short-term neuronal interactions.

Zhao M, Batista A, Cunningham JP, Chestek C, Rivera-Alvidrez Z, Kalmar R, Ryu S, Shenoy K, Iyengar S.

J Comput Neurosci. 2012 Jun;32(3):479-97. doi: 10.1007/s10827-011-0365-5. Epub 2011 Oct 22.

PMID:
22038503
37.

Increased plant volatile production affects oviposition, but not larval development, in the moth Helicoverpa armigera.

McCallum EJ, Cunningham JP, Lücker J, Zalucki MP, De Voss JJ, Botella JR.

J Exp Biol. 2011 Nov 1;214(Pt 21):3672-7. doi: 10.1242/jeb.059923.

38.

Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex.

Chestek CA, Gilja V, Nuyujukian P, Foster JD, Fan JM, Kaufman MT, Churchland MM, Rivera-Alvidrez Z, Cunningham JP, Ryu SI, Shenoy KV.

J Neural Eng. 2011 Aug;8(4):045005. doi: 10.1088/1741-2560/8/4/045005. Epub 2011 Jul 20.

39.

Cortical preparatory activity: representation of movement or first cog in a dynamical machine?

Churchland MM, Cunningham JP, Kaufman MT, Ryu SI, Shenoy KV.

Neuron. 2010 Nov 4;68(3):387-400. doi: 10.1016/j.neuron.2010.09.015.

40.

A closed-loop human simulator for investigating the role of feedback control in brain-machine interfaces.

Cunningham JP, Nuyujukian P, Gilja V, Chestek CA, Ryu SI, Shenoy KV.

J Neurophysiol. 2011 Apr;105(4):1932-49. doi: 10.1152/jn.00503.2010. Epub 2010 Oct 13.

41.

Stimulus onset quenches neural variability: a widespread cortical phenomenon.

Churchland MM, Yu BM, Cunningham JP, Sugrue LP, Cohen MR, Corrado GS, Newsome WT, Clark AM, Hosseini P, Scott BB, Bradley DC, Smith MA, Kohn A, Movshon JA, Armstrong KM, Moore T, Chang SW, Snyder LH, Lisberger SG, Priebe NJ, Finn IM, Ferster D, Ryu SI, Santhanam G, Sahani M, Shenoy KV.

Nat Neurosci. 2010 Mar;13(3):369-78. doi: 10.1038/nn.2501. Epub 2010 Feb 21.

42.

Neural prosthetic systems: current problems and future directions.

Chestek CA, Cunningham JP, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:3369-75. doi: 10.1109/IEMBS.2009.5332822.

PMID:
19963796
43.

Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity.

Yu BM, Cunningham JP, Santhanam G, Ryu SI, Shenoy KV, Sahani M.

J Neurophysiol. 2009 Jul;102(1):614-35. doi: 10.1152/jn.90941.2008. Epub 2009 Apr 8. Erratum in: J Neurophysiol. 2009 Sep;102(3):2008.

44.

Methods for estimating neural firing rates, and their application to brain-machine interfaces.

Cunningham JP, Gilja V, Ryu SI, Shenoy KV.

Neural Netw. 2009 Nov;22(9):1235-46. doi: 10.1016/j.neunet.2009.02.004. Epub 2009 Mar 13. Review.

45.

Influence of heart rate on the BOLD signal: the cardiac response function.

Chang C, Cunningham JP, Glover GH.

Neuroimage. 2009 Feb 1;44(3):857-69. doi: 10.1016/j.neuroimage.2008.09.029. Epub 2008 Oct 7.

46.

Toward optimal target placement for neural prosthetic devices.

Cunningham JP, Yu BM, Gilja V, Ryu SI, Shenoy KV.

J Neurophysiol. 2008 Dec;100(6):3445-57. doi: 10.1152/jn.90833.2008. Epub 2008 Oct 1.

47.

Wolbachia infection alters olfactory-cued locomotion in Drosophila spp.

Peng Y, Nielsen JE, Cunningham JP, McGraw EA.

Appl Environ Microbiol. 2008 Jul;74(13):3943-8. doi: 10.1128/AEM.02607-07. Epub 2008 May 2.

48.

How host plant variability influences the advantages to learning: a theoretical model for oviposition behaviour in Lepidoptera.

Cunningham JP, West SA.

J Theor Biol. 2008 Apr 7;251(3):404-10. doi: 10.1016/j.jtbi.2007.11.009. Epub 2007 Nov 17.

PMID:
18221945
49.

Increasing the performance of cortically-controlled prostheses.

Shenoy KV, Santhanam G, Ryu SI, Afshar A, Yu BM, Gilja V, Linderman MD, Kalmar RS, Cunningham JP, Kemere CT, Batista AP, Churchland MM, Meng TH.

Conf Proc IEEE Eng Med Biol Soc. 2006;Suppl:6652-6. Review.

PMID:
17959477
50.

Optimal target placement for neural communication prostheses.

Cunningham JP, Yu BM, Shenoy KV.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:2912-5.

PMID:
17945745

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