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Items: 25


Applying optimal control theory to complex epidemiological models to inform real-world disease management.

Bussell EH, Dangerfield CE, Gilligan CA, Cunniffe NJ.

Philos Trans R Soc Lond B Biol Sci. 2019 Jul 8;374(1776):20180284. doi: 10.1098/rstb.2018.0284.


Pathogenic modification of plants enhances long-distance dispersal of nonpersistently transmitted viruses to new hosts.

Donnelly R, Cunniffe NJ, Carr JP, Gilligan CA.

Ecology. 2019 Jul;100(7):e02725. doi: 10.1002/ecy.2725. Epub 2019 May 21.


Viral Manipulation of Plant Stress Responses and Host Interactions With Insects.

Carr JP, Donnelly R, Tungadi T, Murphy AM, Jiang S, Bravo-Cazar A, Yoon JY, Cunniffe NJ, Glover BJ, Gilligan CA.

Adv Virus Res. 2018;102:177-197. doi: 10.1016/bs.aivir.2018.06.004. Epub 2018 Jul 25. Review.


Control fast or control smart: When should invading pathogens be controlled?

Thompson RN, Gilligan CA, Cunniffe NJ.

PLoS Comput Biol. 2018 Feb 16;14(2):e1006014. doi: 10.1371/journal.pcbi.1006014. eCollection 2018 Feb.


Using Epidemiological Principles to Explain Fungicide Resistance Management Tactics: Why do Mixtures Outperform Alternations?

Elderfield JAD, Lopez-Ruiz FJ, van den Bosch F, Cunniffe NJ.

Phytopathology. 2018 Jul;108(7):803-817. doi: 10.1094/PHYTO-08-17-0277-R. Epub 2018 May 22.


Evidence-based controls for epidemics using spatio-temporal stochastic models in a Bayesian framework.

Adrakey HK, Streftaris G, Cunniffe NJ, Gottwald TR, Gilligan CA, Gibson GJ.

J R Soc Interface. 2017 Nov;14(136). pii: 20170386. doi: 10.1098/rsif.2017.0386.


Pyrenoid loss in Chlamydomonas reinhardtii causes limitations in CO2 supply, but not thylakoid operating efficiency.

Caspari OD, Meyer MT, Tolleter D, Wittkopp TM, Cunniffe NJ, Lawson T, Grossman AR, Griffiths H.

J Exp Bot. 2017 Jun 1;68(14):3903-3913. doi: 10.1093/jxb/erx197.


Modeling Virus Coinfection to Inform Management of Maize Lethal Necrosis in Kenya.

Hilker FM, Allen LJS, Bokil VA, Briggs CJ, Feng Z, Garrett KA, Gross LJ, Hamelin FM, Jeger MJ, Manore CA, Power AG, Redinbaugh MG, Rúa MA, Cunniffe NJ.

Phytopathology. 2017 Oct;107(10):1095-1108. doi: 10.1094/PHYTO-03-17-0080-FI. Epub 2017 Aug 1.


Cucumber mosaic virus and its 2b protein alter emission of host volatile organic compounds but not aphid vector settling in tobacco.

Tungadi T, Groen SC, Murphy AM, Pate AE, Iqbal J, Bruce TJA, Cunniffe NJ, Carr JP.

Virol J. 2017 May 3;14(1):91. doi: 10.1186/s12985-017-0754-0.


Risk-based management of invading plant disease.

Hyatt-Twynam SR, Parnell S, Stutt RO, Gottwald TR, Gilligan CA, Cunniffe NJ.

New Phytol. 2017 May;214(3):1317-1329. doi: 10.1111/nph.14488. Epub 2017 Mar 28.


Regional Growth Rate Differences Specified by Apical Notch Activities Regulate Liverwort Thallus Shape.

Solly JE, Cunniffe NJ, Harrison CJ.

Curr Biol. 2017 Jan 9;27(1):16-26. doi: 10.1016/j.cub.2016.10.056. Epub 2016 Dec 8.


Virus Infection of Plants Alters Pollinator Preference: A Payback for Susceptible Hosts?

Groen SC, Jiang S, Murphy AM, Cunniffe NJ, Westwood JH, Davey MP, Bruce TJ, Caulfield JC, Furzer OJ, Reed A, Robinson SI, Miller E, Davis CN, Pickett JA, Whitney HM, Glover BJ, Carr JP.

PLoS Pathog. 2016 Aug 11;12(8):e1005790. doi: 10.1371/journal.ppat.1005790. eCollection 2016 Aug. Erratum in: PLoS Pathog. 2016 Sep;12(9):e1005906.


Modeling when, where, and how to manage a forest epidemic, motivated by sudden oak death in California.

Cunniffe NJ, Cobb RC, Meentemeyer RK, Rizzo DM, Gilligan CA.

Proc Natl Acad Sci U S A. 2016 May 17;113(20):5640-5. doi: 10.1073/pnas.1602153113. Epub 2016 May 2.


Detecting Presymptomatic Infection Is Necessary to Forecast Major Epidemics in the Earliest Stages of Infectious Disease Outbreaks.

Thompson RN, Gilligan CA, Cunniffe NJ.

PLoS Comput Biol. 2016 Apr 5;12(4):e1004836. doi: 10.1371/journal.pcbi.1004836. eCollection 2016 Apr.


Management of invading pathogens should be informed by epidemiology rather than administrative boundaries.

Thompson RN, Cobb RC, Gilligan CA, Cunniffe NJ.

Ecol Modell. 2016 Mar 24;324:28-32.


Early detection surveillance for an emerging plant pathogen: a rule of thumb to predict prevalence at first discovery.

Parnell S, Gottwald TR, Cunniffe NJ, Alonso Chavez V, van den Bosch F.

Proc Biol Sci. 2015 Sep 7;282(1814). pii: 20151478. doi: 10.1098/rspb.2015.1478.


Optimising and communicating options for the control of invasive plant disease when there is epidemiological uncertainty.

Cunniffe NJ, Stutt RO, DeSimone RE, Gottwald TR, Gilligan CA.

PLoS Comput Biol. 2015 Apr 13;11(4):e1004211. doi: 10.1371/journal.pcbi.1004211. eCollection 2015 Apr.


Thirteen challenges in modelling plant diseases.

Cunniffe NJ, Koskella B, Metcalf CJ, Parnell S, Gottwald TR, Gilligan CA.

Epidemics. 2015 Mar;10:6-10. doi: 10.1016/j.epidem.2014.06.002. Epub 2014 Jul 1.


Cost-effective control of plant disease when epidemiological knowledge is incomplete: modelling Bahia bark scaling of citrus.

Cunniffe NJ, Laranjeira FF, Neri FM, DeSimone RE, Gilligan CA.

PLoS Comput Biol. 2014 Aug 7;10(8):e1003753. doi: 10.1371/journal.pcbi.1003753. eCollection 2014 Aug.


Time-dependent infectivity and flexible latent and infectious periods in compartmental models of plant disease.

Cunniffe NJ, Stutt RO, van den Bosch F, Gilligan CA.

Phytopathology. 2012 Apr;102(4):365-80. doi: 10.1094/PHYTO-12-10-0338.


Spatial sampling to detect an invasive pathogen outside of an eradication zone.

Demon I, Cunniffe NJ, Marchant BP, Gilligan CA, van den Bosch F.

Phytopathology. 2011 Jun;101(6):725-31. doi: 10.1094/PHYTO-05-09-0120.


A theoretical framework for biological control of soil-borne plant pathogens: Identifying effective strategies.

Cunniffe NJ, Gilligan CA.

J Theor Biol. 2011 Jun 7;278(1):32-43. doi: 10.1016/j.jtbi.2011.02.023. Epub 2011 Mar 5.


Predicting the economic costs and property value losses attributed to sudden oak death damage in California (2010-2020).

Kovacs K, Václavík T, Haight RG, Pang A, Cunniffe NJ, Gilligan CA, Meentemeyer RK.

J Environ Manage. 2011 Apr;92(4):1292-302. doi: 10.1016/j.jenvman.2010.12.018. Epub 2011 Jan 9.


The effect of landscape pattern on the optimal eradication zone of an invading epidemic.

Parnell S, Gottwald TR, Gilligan CA, Cunniffe NJ, van den Bosch F.

Phytopathology. 2010 Jul;100(7):638-44. doi: 10.1094/PHYTO-100-7-0638.


Invasion, persistence and control in epidemic models for plant pathogens: the effect of host demography.

Cunniffe NJ, Gilligan CA.

J R Soc Interface. 2010 Mar 6;7(44):439-51. doi: 10.1098/rsif.2009.0226. Epub 2009 Jul 22.

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