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Items: 1 to 50 of 150

1.

Pre-existing chikungunya virus neutralizing antibodies correlate with risk of symptomatic infection and subclinical seroconversion in a Philippine cohort.

Yoon IK, Srikiatkhachorn A, Alera MT, Fernandez S, Cummings DAT, Salje H.

Int J Infect Dis. 2020 Apr 1. pii: S1201-9712(20)30206-X. doi: 10.1016/j.ijid.2020.03.073. [Epub ahead of print]

PMID:
32247051
2.

Mapping global variation in dengue transmission intensity.

Cattarino L, Rodriguez-Barraquer I, Imai N, Cummings DAT, Ferguson NM.

Sci Transl Med. 2020 Jan 29;12(528). pii: eaax4144. doi: 10.1126/scitranslmed.aax4144.

PMID:
31996463
3.

An Innovative Prospective Hybrid Cohort-Cluster Study Design To Characterize Dengue Virus Transmission In Multigenerational Households In Kamphaeng Phet, Thailand.

Anderson KB, Buddhari D, Srikiatkhachorn A, Ponlawat A, Gromowski GD, Iamsirithaworn S, Weg AL, Ellison DW, Macareo L, Cummings DAT, Yoon IK, Nisalak A, Thomas SJ, Fernandez S, Jarman RG, Rothman AL, Endy TP.

Am J Epidemiol. 2020 Jan 23. pii: kwaa008. doi: 10.1093/aje/kwaa008. [Epub ahead of print]

PMID:
31971570
4.

Impacts of Zika emergence in Latin America on endemic dengue transmission.

Borchering RK, Huang AT, Mier-Y-Teran-Romero L, Rojas DP, Rodriguez-Barraquer I, Katzelnick LC, Martinez SD, King GD, Cinkovich SC, Lessler J, Cummings DAT.

Nat Commun. 2019 Dec 16;10(1):5730. doi: 10.1038/s41467-019-13628-x.

5.

An open challenge to advance probabilistic forecasting for dengue epidemics.

Johansson MA, Apfeldorf KM, Dobson S, Devita J, Buczak AL, Baugher B, Moniz LJ, Bagley T, Babin SM, Guven E, Yamana TK, Shaman J, Moschou T, Lothian N, Lane A, Osborne G, Jiang G, Brooks LC, Farrow DC, Hyun S, Tibshirani RJ, Rosenfeld R, Lessler J, Reich NG, Cummings DAT, Lauer SA, Moore SM, Clapham HE, Lowe R, Bailey TC, García-Díez M, Carvalho MS, Rodó X, Sardar T, Paul R, Ray EL, Sakrejda K, Brown AC, Meng X, Osoba O, Vardavas R, Manheim D, Moore M, Rao DM, Porco TC, Ackley S, Liu F, Worden L, Convertino M, Liu Y, Reddy A, Ortiz E, Rivero J, Brito H, Juarrero A, Johnson LR, Gramacy RB, Cohen JM, Mordecai EA, Murdock CC, Rohr JR, Ryan SJ, Stewart-Ibarra AM, Weikel DP, Jutla A, Khan R, Poultney M, Colwell RR, Rivera-García B, Barker CM, Bell JE, Biggerstaff M, Swerdlow D, Mier-Y-Teran-Romero L, Forshey BM, Trtanj J, Asher J, Clay M, Margolis HS, Hebbeler AM, George D, Chretien JP.

Proc Natl Acad Sci U S A. 2019 Nov 26;116(48):24268-24274. doi: 10.1073/pnas.1909865116. Epub 2019 Nov 11. Erratum in: Proc Natl Acad Sci U S A. 2019 Dec 17;116(51):26087-26088.

6.

Factors influencing participation in an Ebola vaccine trial among front-line workers in Guinea.

Grantz KH, Claudot P, Kambala M, Kouyaté M, Soumah A, Boum Y, Juan-Giner A, Jemmy JP, Cummings DAT, Grais RF.

Vaccine. 2019 Nov 15;37(48):7165-7170. doi: 10.1016/j.vaccine.2019.09.094. Epub 2019 Oct 14.

7.

Detection of Fluorescent Powders and Their Effect on Survival and Recapture of Aedes aegypti (Diptera: Culicidae).

Rojas-Araya D, Alto BW, Burkett-Cadena N, Cummings DA.

J Med Entomol. 2020 Jan 9;57(1):266-272. doi: 10.1093/jme/tjz142.

PMID:
31587060
8.

N95 Respirators vs Medical Masks for Preventing Influenza Among Health Care Personnel: A Randomized Clinical Trial.

Radonovich LJ Jr, Simberkoff MS, Bessesen MT, Brown AC, Cummings DAT, Gaydos CA, Los JG, Krosche AE, Gibert CL, Gorse GJ, Nyquist AC, Reich NG, Rodriguez-Barradas MC, Price CS, Perl TM; ResPECT investigators.

JAMA. 2019 Sep 3;322(9):824-833. doi: 10.1001/jama.2019.11645.

9.

Serological inference of past primary and secondary dengue infection: implications for vaccination.

Lam HM, Phuong HT, Thao Vy NH, Le Thanh NT, Dung PN, Ngoc Muon TT, Van Vinh Chau N, Rodríguez-Barraquer I, Cummings DAT, Wills BA, Boni MF, Rabaa MA, Clapham HE.

J R Soc Interface. 2019 Jul 26;16(156):20190207. doi: 10.1098/rsif.2019.0207. Epub 2019 Jul 31.

10.

Opportunities for improved surveillance and control of dengue from age-specific case data.

Rodriguez-Barraquer I, Salje H, Cummings DA.

Elife. 2019 May 23;8. pii: e45474. doi: 10.7554/eLife.45474.

11.

Utilizing general human movement models to predict the spread of emerging infectious diseases in resource poor settings.

Kraemer MUG, Golding N, Bisanzio D, Bhatt S, Pigott DM, Ray SE, Brady OJ, Brownstein JS, Faria NR, Cummings DAT, Pybus OG, Smith DL, Tatem AJ, Hay SI, Reiner RC Jr.

Sci Rep. 2019 Mar 26;9(1):5151. doi: 10.1038/s41598-019-41192-3.

12.

Long-term circulation of Zika virus in Thailand: an observational study.

Ruchusatsawat K, Wongjaroen P, Posanacharoen A, Rodriguez-Barraquer I, Sangkitporn S, Cummings DAT, Salje H.

Lancet Infect Dis. 2019 Apr;19(4):439-446. doi: 10.1016/S1473-3099(18)30718-7. Epub 2019 Feb 27. Erratum in: Lancet Infect Dis. 2019 Mar 8;:.

13.

Impact of preexisting dengue immunity on Zika virus emergence in a dengue endemic region.

Rodriguez-Barraquer I, Costa F, Nascimento EJM, Nery N Júnior, Castanha PMS, Sacramento GA, Cruz J, Carvalho M, De Olivera D, Hagan JE, Adhikarla H, Wunder EA Jr, Coêlho DF, Azar SR, Rossi SL, Vasilakis N, Weaver SC, Ribeiro GS, Balmaseda A, Harris E, Nogueira ML, Reis MG, Marques ETA, Cummings DAT, Ko AI.

Science. 2019 Feb 8;363(6427):607-610. doi: 10.1126/science.aav6618.

PMID:
30733412
14.

Dengue pre-vaccination screening and positive predictive values.

Rodríguez-Barraquer I, Salje H, Cummings DA.

Lancet Infect Dis. 2019 Feb;19(2):132-134. doi: 10.1016/S1473-3099(18)30799-0. Epub 2019 Jan 30. No abstract available.

PMID:
30712834
15.

Differential mobility and local variation in infection attack rate.

Haw DJ, Cummings DAT, Lessler J, Salje H, Read JM, Riley S.

PLoS Comput Biol. 2019 Jan 22;15(1):e1006600. doi: 10.1371/journal.pcbi.1006600. eCollection 2019 Jan.

16.

Reconstruction and prediction of viral disease epidemics.

Kraemer MUG, Cummings DAT, Funk S, Reiner RC, Faria NR, Pybus OG, Cauchemez S.

Epidemiol Infect. 2018 Nov 5:1-7. doi: 10.1017/S0950268818002881. [Epub ahead of print]

17.

Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus.

Katzelnick LC, Coello Escoto A, McElvany BD, Chávez C, Salje H, Luo W, Rodriguez-Barraquer I, Jarman R, Durbin AP, Diehl SA, Smith DJ, Whitehead SS, Cummings DAT.

PLoS Negl Trop Dis. 2018 Oct 24;12(10):e0006862. doi: 10.1371/journal.pntd.0006862. eCollection 2018 Oct.

18.

Clinical and Epidemiologic Patterns of Chikungunya Virus Infection and Coincident Arboviral Disease in a School Cohort in Haiti, 2014-2015.

Ball JD, Elbadry MA, Telisma T, White SK, Chavannes S, Anilis MG, Prosperi M, Cummings DAT, Lednicky JA, Morris JG, Beau de Rochars M.

Clin Infect Dis. 2019 Mar 5;68(6):919-926. doi: 10.1093/cid/ciy582.

19.

Timescales of influenza A/H3N2 antibody dynamics.

Kucharski AJ, Lessler J, Cummings DAT, Riley S.

PLoS Biol. 2018 Aug 20;16(8):e2004974. doi: 10.1371/journal.pbio.2004974. eCollection 2018 Aug.

20.

Quantifying potentially infectious sharing patterns among people who inject drugs in Baltimore, USA.

Smith MK, Graham M, Latkin CA, Mehta SH, Cummings DAT.

Epidemiol Infect. 2018 Oct;146(14):1845-1853. doi: 10.1017/S0950268818002042. Epub 2018 Aug 2.

21.

Travel distance and human movement predict paths of emergence and spatial spread of chikungunya in Thailand.

Chadsuthi S, Althouse BM, Iamsirithaworn S, Triampo W, Grantz KH, Cummings DAT.

Epidemiol Infect. 2018 Oct;146(13):1654-1662. doi: 10.1017/S0950268818001917. Epub 2018 Jul 9.

PMID:
29983134
22.

The role of benzathine penicillin G in predicting and preventing all-cause acute respiratory disease in military recruits: 1991-2017.

Ball JD, Prosperi MA, Brown A, Chen X, Kenah E, Yang Y, Cummings DAT, Rivers CM.

Epidemiol Infect. 2018 Oct;146(14):1854-1860. doi: 10.1017/S0950268818001838. Epub 2018 Jul 5.

PMID:
29974837
23.

Measles outbreak risk in Pakistan: exploring the potential of combining vaccination coverage and incidence data with novel data-streams to strengthen control.

Wesolowski A, Winter A, Tatem AJ, Qureshi T, Engø-Monsen K, Buckee CO, Cummings DAT, Metcalf CJE.

Epidemiol Infect. 2018 Sep;146(12):1575-1583. doi: 10.1017/S0950268818001449. Epub 2018 Jun 4.

24.

Reconstruction of antibody dynamics and infection histories to evaluate dengue risk.

Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S.

Nature. 2018 May;557(7707):719-723. doi: 10.1038/s41586-018-0157-4. Epub 2018 May 23.

25.

Overlap between harm reduction and HIV service utilisation among PWID in India: Implications for HIV combination prevention.

Smith MK, Solomon SS, Cummings DAT, Srikrishnan AK, Kumar MS, Vasudevan CK, McFall AM, Lucas GM, Celentano DD, Mehta SH.

Int J Drug Policy. 2018 Jul;57:111-118. doi: 10.1016/j.drugpo.2018.02.007. Epub 2018 May 3.

26.

Understanding dengue virus evolution to support epidemic surveillance and counter-measure development.

Pollett S, Melendrez MC, Maljkovic Berry I, Duchêne S, Salje H, Cummings DAT, Jarman RG.

Infect Genet Evol. 2018 Aug;62:279-295. doi: 10.1016/j.meegid.2018.04.032. Epub 2018 Apr 25. Review.

27.

Role of monkeys in the sylvatic cycle of chikungunya virus in Senegal.

Althouse BM, Guerbois M, Cummings DAT, Diop OM, Faye O, Faye A, Diallo D, Sadio BD, Sow A, Faye O, Sall AA, Diallo M, Benefit B, Simons E, Watts DM, Weaver SC, Hanley KA.

Nat Commun. 2018 Mar 13;9(1):1046. doi: 10.1038/s41467-018-03332-7.

28.

Protecting Healthcare Personnel in Outpatient Settings: The Influence of Mandatory Versus Nonmandatory Influenza Vaccination Policies on Workplace Absenteeism During Multiple Respiratory Virus Seasons.

Frederick J, Brown AC, Cummings DA, Gaydos CA, Gibert CL, Gorse GJ, Los JG, Nyquist AC, Perl TM, Price CS, Radonovich LJ, Reich NG, Rodriguez-Barradas MC, Bessesen MT, Simberkoff MS.

Infect Control Hosp Epidemiol. 2018 Apr;39(4):452-461. doi: 10.1017/ice.2018.9. Epub 2018 Mar 8.

PMID:
29514719
29.

Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, 2010-2014.

Lauer SA, Sakrejda K, Ray EL, Keegan LT, Bi Q, Suangtho P, Hinjoy S, Iamsirithaworn S, Suthachana S, Laosiritaworn Y, Cummings DAT, Lessler J, Reich NG.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2175-E2182. doi: 10.1073/pnas.1714457115. Epub 2018 Feb 20.

30.

Immune status alters the probability of apparent illness due to dengue virus infection: Evidence from a pooled analysis across multiple cohort and cluster studies.

Clapham HE, Cummings DAT, Johansson MA.

PLoS Negl Trop Dis. 2017 Sep 27;11(9):e0005926. doi: 10.1371/journal.pntd.0005926. eCollection 2017 Sep.

31.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.

Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Nature. 2017 Jun 15;546(7658):401-405. doi: 10.1038/nature22400. Epub 2017 May 24.

32.

Reply to Shanks and Brundage: Many plausible mechanisms of pandemic mortality disparities.

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DAT.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):E3588-E3589. doi: 10.1073/pnas.1703851114. Epub 2017 Apr 6. No abstract available.

33.

Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size.

Salje H, Lessler J, Maljkovic Berry I, Melendrez MC, Endy T, Kalayanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo LR, Yoon IK, Sangarsang A, Jarman RG, Cummings DA.

Science. 2017 Mar 24;355(6331):1302-1306. doi: 10.1126/science.aaj9384.

34.

Case study in evaluating time series prediction models using the relative mean absolute error.

Reich NG, Lessler J, Sakrejda K, Lauer SA, Iamsirithaworn S, Cummings DA.

Am Stat. 2016;70(3):285-292. doi: 10.1080/00031305.2016.1148631. Epub 2016 Aug 10.

35.

Synchrony of Dengue Incidence in Ho Chi Minh City and Bangkok.

Hoang Quoc C, Henrik S, Isabel RB, In-Kyu Y, Chau NV, Hung NT, Tuan HM, Lan PT, Willis B, Nisalak A, Kalayanarooj S, Cummings DA, Simmons CP.

PLoS Negl Trop Dis. 2016 Dec 29;10(12):e0005188. doi: 10.1371/journal.pntd.0005188. eCollection 2016 Dec. Erratum in: PLoS Negl Trop Dis. 2017 Mar 17;11(3):e0005442.

36.

The Long-Term Safety, Public Health Impact, and Cost-Effectiveness of Routine Vaccination with a Recombinant, Live-Attenuated Dengue Vaccine (Dengvaxia): A Model Comparison Study.

Flasche S, Jit M, Rodríguez-Barraquer I, Coudeville L, Recker M, Koelle K, Milne G, Hladish TJ, Perkins TA, Cummings DA, Dorigatti I, Laydon DJ, España G, Kelso J, Longini I, Lourenco J, Pearson CA, Reiner RC, Mier-Y-Terán-Romero L, Vannice K, Ferguson N.

PLoS Med. 2016 Nov 29;13(11):e1002181. doi: 10.1371/journal.pmed.1002181. eCollection 2016 Nov.

37.

Disparities in influenza mortality and transmission related to sociodemographic factors within Chicago in the pandemic of 1918.

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DA.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13839-13844. Epub 2016 Nov 21.

38.

Times to key events in Zika virus infection and implications for blood donation: a systematic review.

Lessler J, Ott CT, Carcelen AC, Konikoff JM, Williamson J, Bi Q, Kucirka LM, Cummings DA, Reich NG, Chaisson LH.

Bull World Health Organ. 2016 Nov 1;94(11):841-849. Review.

39.

Estimating infectious disease transmission distances using the overall distribution of cases.

Salje H, Cummings DAT, Lessler J.

Epidemics. 2016 Dec;17:10-18. doi: 10.1016/j.epidem.2016.10.001. Epub 2016 Oct 7.

40.

Benefits and risks of the Sanofi-Pasteur dengue vaccine: Modeling optimal deployment.

Ferguson NM, Rodríguez-Barraquer I, Dorigatti I, Mier-Y-Teran-Romero L, Laydon DJ, Cummings DA.

Science. 2016 Sep 2;353(6303):1033-1036.

41.

Using age-stratified incidence data to examine the transmission consequences of pertussis vaccination.

Blackwood JC, Cummings DA, Iamsirithaworn S, Rohani P.

Epidemics. 2016 Sep;16:1-7. doi: 10.1016/j.epidem.2016.02.001. Epub 2016 Mar 19.

42.

Unraveling the drivers of MERS-CoV transmission.

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9081-6. doi: 10.1073/pnas.1519235113. Epub 2016 Jul 25.

43.

Assessing the global threat from Zika virus.

Lessler J, Chaisson LH, Kucirka LM, Bi Q, Grantz K, Salje H, Carcelen AC, Ott CT, Sheffield JS, Ferguson NM, Cummings DA, Metcalf CJ, Rodriguez-Barraquer I.

Science. 2016 Aug 12;353(6300):aaf8160. doi: 10.1126/science.aaf8160. Epub 2016 Jul 14. Review.

44.

A comparison of hemagglutination inhibition and neutralization assays for characterizing immunity to seasonal influenza A.

Truelove S, Zhu H, Lessler J, Riley S, Read JM, Wang S, Kwok KO, Guan Y, Jiang CQ, Cummings DA.

Influenza Other Respir Viruses. 2016 Nov;10(6):518-524. doi: 10.1111/irv.12408. Epub 2016 Aug 27.

45.

Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand.

Reich NG, Lauer SA, Sakrejda K, Iamsirithaworn S, Hinjoy S, Suangtho P, Suthachana S, Clapham HE, Salje H, Cummings DA, Lessler J.

PLoS Negl Trop Dis. 2016 Jun 15;10(6):e0004761. doi: 10.1371/journal.pntd.0004761. eCollection 2016 Jun.

46.

The Respiratory Protection Effectiveness Clinical Trial (ResPECT): a cluster-randomized comparison of respirator and medical mask effectiveness against respiratory infections in healthcare personnel.

Radonovich LJ Jr, Bessesen MT, Cummings DA, Eagan A, Gaydos C, Gibert C, Gorse GJ, Nyquist AC, Reich NG, Rodrigues-Barradas M, Savor-Price C, Shaffer RE, Simberkoff MS, Perl TM.

BMC Infect Dis. 2016 Jun 2;16:243. doi: 10.1186/s12879-016-1494-2.

47.

Measuring Spatial Dependence for Infectious Disease Epidemiology.

Lessler J, Salje H, Grabowski MK, Cummings DA.

PLoS One. 2016 May 19;11(5):e0155249. doi: 10.1371/journal.pone.0155249. eCollection 2016.

48.

Dengue Vaccine in Regions of Endemic Disease.

Rodriguez-Barraquer I, Salje H, Cummings DA.

N Engl J Med. 2016 Apr 7;374(14):1388. doi: 10.1056/NEJMc1514451. No abstract available.

PMID:
27050220
49.

Forty Years of Dengue Surveillance at a Tertiary Pediatric Hospital in Bangkok, Thailand, 1973-2012.

Nisalak A, Clapham HE, Kalayanarooj S, Klungthong C, Thaisomboonsuk B, Fernandez S, Reiser J, Srikiatkhachorn A, Macareo LR, Lessler JT, Cummings DA, Yoon IK.

Am J Trop Med Hyg. 2016 Jun 1;94(6):1342-7. doi: 10.4269/ajtmh.15-0337. Epub 2016 Mar 28.

50.

Social Contact Networks and Mixing among Students in K-12 Schools in Pittsburgh, PA.

Guclu H, Read J, Vukotich CJ Jr, Galloway DD, Gao H, Rainey JJ, Uzicanin A, Zimmer SM, Cummings DA.

PLoS One. 2016 Mar 15;11(3):e0151139. doi: 10.1371/journal.pone.0151139. eCollection 2016.

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