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Items: 1 to 50 of 54

1.

ALK Mutation Status Before and After Alectinib Treatment in Locally Advanced or Metastatic ALK-Positive NSCLC: Pooled Analysis of Two Prospective Trials.

Noé J, Lovejoy A, Ou SI, Yaung SJ, Bordogna W, Klass DM, Cummings CA, Shaw AT.

J Thorac Oncol. 2019 Nov 9. pii: S1556-0864(19)33633-0. doi: 10.1016/j.jtho.2019.10.015. [Epub ahead of print]

PMID:
31712133
2.

Blood-based tumor mutational burden as a predictor of clinical benefit in non-small-cell lung cancer patients treated with atezolizumab.

Gandara DR, Paul SM, Kowanetz M, Schleifman E, Zou W, Li Y, Rittmeyer A, Fehrenbacher L, Otto G, Malboeuf C, Lieber DS, Lipson D, Silterra J, Amler L, Riehl T, Cummings CA, Hegde PS, Sandler A, Ballinger M, Fabrizio D, Mok T, Shames DS.

Nat Med. 2018 Sep;24(9):1441-1448. doi: 10.1038/s41591-018-0134-3. Epub 2018 Aug 6.

PMID:
30082870
3.

Reduced Disc Shedding and Phagocytosis of Photoreceptor Outer Segment Contributes to Kava Kava Extract-induced Retinal Degeneration in F344/N Rats.

Yamashita H, Hoenerhoff MJ, Shockley KR, Peddada SD, Gerrish KE, Sutton D, Cummings CA, Wang Y, Julie FF, Behl M, Waidyanatha S, Sills RC, Pandiri AR.

Toxicol Pathol. 2018 Jul;46(5):564-573. doi: 10.1177/0192623318778796. Epub 2018 May 27.

4.

The Role of Next-Generation Sequencing in Enabling Personalized Oncology Therapy.

Cummings CA, Peters E, Lacroix L, Andre F, Lackner MR.

Clin Transl Sci. 2016 Dec;9(6):283-292. doi: 10.1111/cts.12429. Epub 2016 Nov 15. No abstract available.

5.

Male infertility in mice lacking the store-operated Ca(2+) channel Orai1.

Davis FM, Goulding EH, D'Agostin DM, Janardhan KS, Cummings CA, Bird GS, Eddy EM, Putney JW.

Cell Calcium. 2016 Apr;59(4):189-97. doi: 10.1016/j.ceca.2016.02.007. Epub 2016 Feb 27.

6.

Early transcriptional changes in cardiac mitochondria during chronic doxorubicin exposure and mitigation by dexrazoxane in mice.

Vijay V, Moland CL, Han T, Fuscoe JC, Lee T, Herman EH, Jenkins GR, Lewis SM, Cummings CA, Gao Y, Cao Z, Yu LR, Desai VG.

Toxicol Appl Pharmacol. 2016 Mar 15;295:68-84. doi: 10.1016/j.taap.2016.02.003. Epub 2016 Feb 9.

PMID:
26873546
7.

Immunogold electron microscopy and confocal analyses reveal distinctive patterns of histone H3 phosphorylation during mitosis in MCF-7 cells.

Yan Y, Cummings CA, Sutton D, Yu L, Castro L, Moore AB, Gao X, Dixon D.

Genes Chromosomes Cancer. 2016 Apr;55(4):397-406. doi: 10.1002/gcc.22343. Epub 2016 Jan 22.

8.

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS.

PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015.

9.

Hepatic Mitochondrial Alteration in CD-1 Mice Associated with Prenatal Exposures to Low Doses of Perfluorooctanoic Acid (PFOA).

Quist EM, Filgo AJ, Cummings CA, Kissling GE, Hoenerhoff MJ, Fenton SE.

Toxicol Pathol. 2015 Jun;43(4):546-57. doi: 10.1177/0192623314551841. Epub 2014 Oct 16.

10.

Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States.

Rodriguez-Rivera LD, Moreno Switt AI, Degoricija L, Fang R, Cummings CA, Furtado MR, Wiedmann M, den Bakker HC.

BMC Genomics. 2014 Jun 4;15:427. doi: 10.1186/1471-2164-15-427.

11.

Proceedings of the 2013 National Toxicology Program Satellite Symposium.

Elmore SA, Boyle MC, Boyle MH, Cora MC, Crabbs TA, Cummings CA, Gruebbel MM, Johnson CL, Malarkey DE, McInnes EF, Nolte T, Shackelford CC, Ward JM.

Toxicol Pathol. 2014 Jan;42(1):12-44. doi: 10.1177/0192623313508020. Epub 2013 Dec 13.

12.

SOX8 regulates permeability of the blood-testes barrier that affects adult male fertility in the mouse.

Singh AP, Cummings CA, Mishina Y, Archer TK.

Biol Reprod. 2013 May 31;88(5):133. doi: 10.1095/biolreprod.112.107284. Print 2013 May.

13.

Molecular characterization of the predominant influenza A(H1N1)pdm09 virus in Mexico, December 2011-February 2012.

de la Rosa-Zamboni D, Vázquez-Pérez JA, Avila-Ríos S, Carranco-Arenas AP, Ormsby CE, Cummings CA, Soto-Nava M, Hernández-Hernández VA, Orozco-Sánchez CO, la Barrera CA, Pérez-Padilla R, Reyes-Terán G.

PLoS One. 2012;7(11):e50116. doi: 10.1371/journal.pone.0050116. Epub 2012 Nov 29.

14.

Comparative analysis of genome sequences covering the seven cronobacter species.

Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ.

PLoS One. 2012;7(11):e49455. doi: 10.1371/journal.pone.0049455. Epub 2012 Nov 16.

15.

Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission.

Moreno Switt AI, den Bakker HC, Cummings CA, Rodriguez-Rivera LD, Govoni G, Raneiri ML, Degoricija L, Brown S, Hoelzer K, Peters JE, Bolchacova E, Furtado MR, Wiedmann M.

PLoS One. 2012;7(7):e41247. doi: 10.1371/journal.pone.0041247. Epub 2012 Jul 20.

16.

Myocardial mitochondrial injury induced by pulmonary exposure to particulate matter in rats.

Golomb E, Matza D, Cummings CA, Schwalb H, Kodavanti UP, Schneider A, Houminer E, Korach A, Nyska A, Shapira OM.

Toxicol Pathol. 2012 Jul;40(5):779-88. doi: 10.1177/0192623312441409. Epub 2012 May 1.

PMID:
22549975
17.

Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage.

Kyle JL, Cummings CA, Parker CT, Quiñones B, Vatta P, Newton E, Huynh S, Swimley M, Degoricija L, Barker M, Fontanoz S, Nguyen K, Patel R, Fang R, Tebbs R, Petrauskene O, Furtado M, Mandrell RE.

J Bacteriol. 2012 Apr;194(8):1885-96. doi: 10.1128/JB.00120-12. Epub 2012 Feb 10.

18.

A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type.

Bakker HC, Switt AI, Cummings CA, Hoelzer K, Degoricija L, Rodriguez-Rivera LD, Wright EM, Fang R, Davis M, Root T, Schoonmaker-Bopp D, Musser KA, Villamil E, Waechter H, Kornstein L, Furtado MR, Wiedmann M.

Appl Environ Microbiol. 2011 Dec;77(24):8648-55. doi: 10.1128/AEM.06538-11. Epub 2011 Oct 14.

19.

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica.

den Bakker HC, Moreno Switt AI, Govoni G, Cummings CA, Ranieri ML, Degoricija L, Hoelzer K, Rodriguez-Rivera LD, Brown S, Bolchacova E, Furtado MR, Wiedmann M.

BMC Genomics. 2011 Aug 22;12:425. doi: 10.1186/1471-2164-12-425.

20.

Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology.

Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, Prior K, Szczepanowski R, Ji Y, Zhang W, McLaughlin SF, Henkhaus JK, Leopold B, Bielaszewska M, Prager R, Brzoska PM, Moore RL, Guenther S, Rothberg JM, Karch H.

PLoS One. 2011;6(7):e22751. doi: 10.1371/journal.pone.0022751. Epub 2011 Jul 20.

21.

Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression.

Brickman TJ, Cummings CA, Liew SY, Relman DA, Armstrong SK.

J Bacteriol. 2011 Sep;193(18):4798-812. doi: 10.1128/JB.05136-11. Epub 2011 Jul 8.

22.

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss.

den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR, Wiedmann M.

BMC Genomics. 2010 Dec 2;11:688. doi: 10.1186/1471-2164-11-688.

23.

Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.

Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B.

Investig Genet. 2010 Sep 1;1(1):5. doi: 10.1186/2041-2223-1-5.

24.

PPAR alpha, more than PPAR delta, mediates the hepatic and skeletal muscle alterations induced by the PPAR agonist GW0742.

Faiola B, Falls JG, Peterson RA, Bordelon NR, Brodie TA, Cummings CA, Romach EH, Miller RT.

Toxicol Sci. 2008 Oct;105(2):384-94. doi: 10.1093/toxsci/kfn130. Epub 2008 Jun 30.

PMID:
18593727
25.

Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis.

Gogol EB, Cummings CA, Burns RC, Relman DA.

BMC Genomics. 2007 May 17;8:122.

26.

Characterization of a highly conserved island in the otherwise divergent Bordetella holmesii and Bordetella pertussis genomes.

Diavatopoulos DA, Cummings CA, van der Heide HG, van Gent M, Liew S, Relman DA, Mooi FR.

J Bacteriol. 2006 Dec;188(24):8385-94. Epub 2006 Oct 13.

27.

Growth phase- and nutrient limitation-associated transcript abundance regulation in Bordetella pertussis.

Nakamura MM, Liew SY, Cummings CA, Brinig MM, Dieterich C, Relman DA.

Infect Immun. 2006 Oct;74(10):5537-48.

28.

Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation.

Brinig MM, Cummings CA, Sanden GN, Stefanelli P, Lawrence A, Relman DA.

J Bacteriol. 2006 Apr;188(7):2375-82.

29.

Species- and strain-specific control of a complex, flexible regulon by Bordetella BvgAS.

Cummings CA, Bootsma HJ, Relman DA, Miller JF.

J Bacteriol. 2006 Mar;188(5):1775-85.

30.

Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica.

Diavatopoulos DA, Cummings CA, Schouls LM, Brinig MM, Relman DA, Mooi FR.

PLoS Pathog. 2005 Dec;1(4):e45. Epub 2005 Dec 30.

31.

Characterization of stages of Hepatozoon americanum and of parasitized canine host cells.

Cummings CA, Panciera RJ, Kocan KM, Mathew JS, Ewing SA.

Vet Pathol. 2005 Nov;42(6):788-96.

PMID:
16301575
32.

A novel rhoptry protein in Toxoplasma gondii bradyzoites and merozoites.

Schwarz JA, Fouts AE, Cummings CA, Ferguson DJ, Boothroyd JC.

Mol Biochem Parasitol. 2005 Dec;144(2):159-66. Epub 2005 Sep 8.

PMID:
16182390
33.

Electron microscopy of wet tissues: a case study in renal pathology.

Nyska A, Cummings CA, Vainshtein A, Nadler J, Ezov N, Grunfeld Y, Gileadi O, Behar V.

Toxicol Pathol. 2004 May-Jun;32(3):357-63.

PMID:
15204979
34.

Bordetella species are distinguished by patterns of substantial gene loss and host adaptation.

Cummings CA, Brinig MM, Lepp PW, van de Pas S, Relman DA.

J Bacteriol. 2004 Mar;186(5):1484-92.

35.

Determination of time of onset and location of early skeletal lesions in young dogs experimentally infected with Hepatozoon americanum using bone scintigraphy.

Drost WT, Cummings CA, Mathew JS, Panciera RJ, Ko JC.

Vet Radiol Ultrasound. 2003 Jan-Feb;44(1):86-91.

PMID:
12620057
36.

The hepatic endothelial carcinogen riddelliine induces endothelial apoptosis, mitosis, S phase, and p53 and hepatocytic vascular endothelial growth factor expression after short-term exposure.

Nyska A, Moomaw CR, Foley JF, Maronpot RR, Malarkey DE, Cummings CA, Peddada S, Moyer CF, Allen DG, Travlos G, Chan PC.

Toxicol Appl Pharmacol. 2002 Nov 1;184(3):153-64.

PMID:
12460743
37.
38.

Genomics and microbiology. Microbial forensics--"cross-examining pathogens".

Cummings CA, Relman DA.

Science. 2002 Jun 14;296(5575):1976-9. Epub 2002 May 9. No abstract available.

PMID:
12004075
39.

Comparison of tissue stages of Hepatozoon americanum in the dog using immunohistochemical and routine histologic methods.

Panciera RJ, Mathew JS, Cummings CA, Duffy JC, Ewing SA, Kocan AA.

Vet Pathol. 2001 Jul;38(4):422-6.

PMID:
11467476
40.

An atypical lymphoma of T-cell lineage in the thorax of an aged cow.

Step DL, Cummings CA, Streeter RN, Kirkpatrick JG, Campbell GA.

J Vet Diagn Invest. 2001 Mar;13(2):154-8.

PMID:
11289212
41.

An indirect enzyme-linked immunosorbent assay for diagnosis of American canine hepatozoonosis.

Mathew JS, Saliki JT, Ewing SA, Lehenbauer TW, Panciera RJ, Malayer JR, Cummings CA, Kocan AA.

J Vet Diagn Invest. 2001 Jan;13(1):17-21.

PMID:
11243356
42.

American canine hepatozoonosis. An emerging disease in the New World.

Ewing SA, Panciera RJ, Mathew JS, Cummings CA, Kocan AA.

Ann N Y Acad Sci. 2000;916:81-92. Review.

PMID:
11193705
43.

Muscular sarcocystosis in coyotes from Oklahoma.

Cummings CA, Kocan AA, Barker RW, Dubey JP.

J Wildl Dis. 2000 Oct;36(4):761-3.

PMID:
11085440
44.

Ossifying fibroma in a llama.

McCauley CT, Campbell GA, Cummings CA, Drost WT.

J Vet Diagn Invest. 2000 Sep;12(5):473-6.

PMID:
11021440
45.

Using DNA microarrays to study host-microbe interactions.

Cummings CA, Relman DA.

Emerg Infect Dis. 2000 Sep-Oct;6(5):513-25. Review.

46.

Skeletal lesions of canine hepatozoonosis caused by Hepatozoon americanum.

Panciera RJ, Mathew JS, Ewing SA, Cummings CA, Drost WT, Kocan AA.

Vet Pathol. 2000 May;37(3):225-30.

PMID:
10810986
47.

Naturally occurring and experimentally transmitted Hepatozoon americanum in coyotes from Oklahoma.

Kocan AA, Cummings CA, Panciera RJ, Mathew JS, Ewing SA, Barker RW.

J Wildl Dis. 2000 Jan;36(1):149-53.

PMID:
10682757
48.

Canine hepatozoonosis: comparison of lesions and parasites in skeletal muscle of dogs experimentally or naturally infected with Hepatozoon americanum.

Panciera RJ, Ewing SA, Mathew JS, Lehenbauer TW, Cummings CA, Woods JP.

Vet Parasitol. 1999 May;82(4):261-72.

PMID:
10384901
49.

Observations on tissue stages of Hepatozoon americanum in 19 naturally infected dogs.

Panciera RJ, Ewing SA, Mathew JS, Cummings CA, Kocan AA, Breshears MA, Fox JC.

Vet Parasitol. 1998 Aug 31;78(4):265-76.

PMID:
9786627
50.

Equine gastric impaction, ulceration, and perforation due to persimmon (Diospyros virginiana) ingestion.

Cummings CA, Copedge KJ, Confer AW.

J Vet Diagn Invest. 1997 Jul;9(3):311-3. No abstract available.

PMID:
9249173

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