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Multi-omics investigation reveals benzalkonium chloride disinfectants alter sterol and lipid homeostasis in the mouse neonatal brain.

Herron JM, Hines KM, Tomita H, Seguin RP, Cui JY, Xu L.

Toxicol Sci. 2019 Jun 14. pii: kfz139. doi: 10.1093/toxsci/kfz139. [Epub ahead of print]


PBDEs and Gut Microbiome Modulate Metabolic Syndrome-Related Aqueous Metabolites in Mice.

Scoville DK, Li CY, Wang D, Dempsey JL, Raftery D, Mani S, Gu H, Cui JY.

Drug Metab Dispos. 2019 May 23. pii: dmd.119.086538. doi: 10.1124/dmd.119.086538. [Epub ahead of print]


RNA-Seq provides new insights on the relative mRNA abundance of antioxidant components during mouse liver development.

Wu KC, Cui JY, Liu J, Lu H, Zhong XB, Klaassen CD.

Free Radic Biol Med. 2019 Apr;134:335-342. doi: 10.1016/j.freeradbiomed.2019.01.017. Epub 2019 Jan 16.


Regulation of Hepatic Long Noncoding RNAs by Pregnane X Receptor and Constitutive Androstane Receptor Agonists in Mouse Liver.

Dempsey JL, Cui JY.

Drug Metab Dispos. 2019 Mar;47(3):329-339. doi: 10.1124/dmd.118.085142. Epub 2018 Dec 28.


Breast cancer detection using targeted plasma metabolomics.

Jasbi P, Wang D, Cheng SL, Fei Q, Cui JY, Liu L, Wei Y, Raftery D, Gu H.

J Chromatogr B Analyt Technol Biomed Life Sci. 2019 Jan 15;1105:26-37. doi: 10.1016/j.jchromb.2018.11.029. Epub 2018 Dec 3.


Hepatic steatosis and reduction in steatosis following bariatric weight loss surgery differs between segments and lobes.

Fazeli Dehkordy S, Fowler KJ, Mamidipalli A, Wolfson T, Hong CW, Covarrubias Y, Hooker JC, Sy EZ, Schlein AN, Cui JY, Gamst AC, Hamilton G, Reeder SB, Sirlin CB.

Eur Radiol. 2019 May;29(5):2474-2480. doi: 10.1007/s00330-018-5894-0. Epub 2018 Dec 13.


Gut Microbiota Modulates Interactions Between Polychlorinated Biphenyls and Bile Acid Homeostasis.

Cheng SL, Li X, Lehmler HJ, Phillips B, Shen D, Cui JY.

Toxicol Sci. 2018 Dec 1;166(2):269-287. doi: 10.1093/toxsci/kfy208.


Coordinate regulation of long non-coding RNAs and protein-coding genes in germ-free mice.

Dempsey J, Zhang A, Cui JY.

BMC Genomics. 2018 Nov 21;19(1):834. doi: 10.1186/s12864-018-5235-3.


Hundreds of Unrecognized Halogenated Contaminants Discovered in Polar Bear Serum.

Liu Y, Richardson ES, Derocher AE, Lunn NJ, Lehmler HJ, Li X, Zhang Y, Cui JY, Cheng L, Martin JW.

Angew Chem Int Ed Engl. 2018 Dec 10;57(50):16401-16406. doi: 10.1002/anie.201809906. Epub 2018 Nov 15.


MiR-451a suppressed cell migration and invasion in non-small cell lung cancer through targeting ATF2.

Shen YY, Cui JY, Yuan J, Wang X.

Eur Rev Med Pharmacol Sci. 2018 Sep;22(17):5554-5561. doi: 10.26355/eurrev_201809_15818.


[Analysis of the characteristics of electrocardiogram in patients of different genders with pulmonary hypertension].

Liu XG, Li JY, Liu CL, Wang XN, Cui JY, Zhang NF, Hong C.

Zhonghua Jie He He Hu Xi Za Zhi. 2018 Sep 12;41(9):728-733. doi: 10.3760/cma.j.issn.1001-0939.2018.09.015. Chinese.


Regulation of protein-coding gene and long noncoding RNA pairs in liver of conventional and germ-free mice following oral PBDE exposure.

Li CY, Cui JY.

PLoS One. 2018 Aug 1;13(8):e0201387. doi: 10.1371/journal.pone.0201387. eCollection 2018.


PBDEs Altered Gut Microbiome and Bile Acid Homeostasis in Male C57BL/6 Mice.

Li CY, Dempsey JL, Wang D, Lee S, Weigel KM, Fei Q, Bhatt DK, Prasad B, Raftery D, Gu H, Cui JY.

Drug Metab Dispos. 2018 Aug;46(8):1226-1240. doi: 10.1124/dmd.118.081547. Epub 2018 May 16.


Statin therapy on glycemic control in type 2 diabetic patients: A network meta-analysis.

Cui JY, Zhou RR, Han S, Wang TS, Wang LQ, Xie XH.

J Clin Pharm Ther. 2018 Aug;43(4):556-570. doi: 10.1111/jcpt.12690. Epub 2018 May 7.


Liver fat imaging-a clinical overview of ultrasound, CT, and MR imaging.

Zhang YN, Fowler KJ, Hamilton G, Cui JY, Sy EZ, Balanay M, Hooker JC, Szeverenyi N, Sirlin CB.

Br J Radiol. 2018 Sep;91(1089):20170959. doi: 10.1259/bjr.20170959. Epub 2018 Jun 6. Review.


CAFs enhance paclitaxel resistance by inducing EMT through the IL‑6/JAK2/STAT3 pathway.

Wang L, Zhang F, Cui JY, Chen L, Chen YT, Liu BW.

Oncol Rep. 2018 May;39(5):2081-2090. doi: 10.3892/or.2018.6311. Epub 2018 Mar 14.


Physiological Regulation of Drug Metabolism and Transport: Pregnancy, Microbiome, Inflammation, Infection, and Fasting.

Morgan ET, Dempsey JL, Mimche SM, Lamb TJ, Kulkarni S, Cui JY, Jeong H, Slitt AL.

Drug Metab Dispos. 2018 May;46(5):503-513. doi: 10.1124/dmd.117.079905. Epub 2018 Mar 7.


A new method of CT for the cardiac measurement: correlation of computed tomography measured cardiac parameters and pulmonary obstruction index to assess cardiac morphological changes in acute pulmonary embolism patients.

Guo ZJ, Liu HT, Bai ZM, Lin Q, Zhao BH, Xu Q, Zeng YH, Feng WQ, Zhou HT, Liang F, Cui JY.

J Thromb Thrombolysis. 2018 Apr;45(3):410-416. doi: 10.1007/s11239-018-1628-z.


The prognostic value of AGR2 expression in solid tumours: a systematic review and meta-analysis.

Tian SB, Tao KX, Hu J, Liu ZB, Ding XL, Chu YN, Cui JY, Shuai XM, Gao JB, Cai KL, Wang JL, Wang GB, Wang L, Wang Z.

Sci Rep. 2017 Nov 14;7(1):15500. doi: 10.1038/s41598-017-15757-z.


Remote Sensing between Liver and Intestine: Importance of Microbial Metabolites.

Fu ZD, Cui JY.

Curr Pharmacol Rep. 2017 Jun;3(3):101-113. doi: 10.1007/s40495-017-0087-0. Epub 2017 Mar 3.


RNA-Seq Profiling of Intestinal Expression of Xenobiotic Processing Genes in Germ-Free Mice.

Fu ZD, Selwyn FP, Cui JY, Klaassen CD.

Drug Metab Dispos. 2017 Dec;45(12):1225-1238. doi: 10.1124/dmd.117.077313. Epub 2017 Sep 22.


Characterization of a novel panel of plasma microRNAs that discriminates between Mycobacterium tuberculosis infection and healthy individuals.

Cui JY, Liang HW, Pan XL, Li D, Jiao N, Liu YH, Fu J, He XY, Sun GX, Zhang CL, Zhao CH, Li DH, Dai EY, Zen K, Zhang FM, Zhang CY, Chen X, Ling H.

PLoS One. 2017 Sep 14;12(9):e0184113. doi: 10.1371/journal.pone.0184113. eCollection 2017.


Molecular mapping and candidate gene analysis for resistance to powdery mildew in Cucumis sativus stem.

Liu PN, Miao H, Lu HW, Cui JY, Tian GL, Wehner TC, Gu XF, Zhang SP.

Genet Mol Res. 2017 Aug 31;16(3). doi: 10.4238/gmr16039680.


Novel Interactions between Gut Microbiome and Host Drug-Processing Genes Modify the Hepatic Metabolism of the Environmental Chemicals Polybrominated Diphenyl Ethers.

Li CY, Lee S, Cade S, Kuo LJ, Schultz IR, Bhatt DK, Prasad B, Bammler TK, Cui JY.

Drug Metab Dispos. 2017 Nov;45(11):1197-1214. doi: 10.1124/dmd.117.077024. Epub 2017 Sep 1.


A quantitative and efficient approach to select MIRU-VNTR loci based on accumulation of the percentage differences of strains for discriminating divergent Mycobacterium tuberculosis sublineages.

Pan XL, Zhang CL, Nakajima C, Fu J, Shao CX, Zhao LN, Cui JY, Jiao N, Fan CL, Suzuki Y, Hattori T, Li D, Ling H.

Emerg Microbes Infect. 2017 Jul 26;6(7):e68. doi: 10.1038/emi.2017.58.


The Role of MicroRNAs in Environmental Risk Factors, Noise-Induced Hearing Loss, and Mental Stress.

Miguel V, Cui JY, Daimiel L, Espinosa-Díez C, Fernández-Hernando C, Kavanagh TJ, Lamas S.

Antioxid Redox Signal. 2018 Mar 20;28(9):773-796. doi: 10.1089/ars.2017.7175. Epub 2017 Jun 30. Review.


RNA Sequencing Reveals Age and Species Differences of Constitutive Androstane Receptor-Targeted Drug-Processing Genes in the Liver.

Cheng SL, Bammler TK, Cui JY.

Drug Metab Dispos. 2017 Jul;45(7):867-882. doi: 10.1124/dmd.117.075135. Epub 2017 Feb 23.


Biosensor-assisted transcriptional regulator engineering for Methylobacterium extorquens AM1 to improve mevalonate synthesis by increasing the acetyl-CoA supply.

Liang WF, Cui LY, Cui JY, Yu KW, Yang S, Wang TM, Guan CG, Zhang C, Xing XH.

Metab Eng. 2017 Jan;39:159-168. doi: 10.1016/j.ymben.2016.11.010. Epub 2016 Dec 3.


Long Non-Coding RNAs: A Novel Paradigm for Toxicology.

Dempsey JL, Cui JY.

Toxicol Sci. 2017 Jan;155(1):3-21. doi: 10.1093/toxsci/kfw203. Epub 2016 Nov 17. Review.


Characterizing drug-metabolizing enzymes and transporters that are bona fide CAR-target genes in mouse intestine.

Park S, Cheng SL, Cui JY.

Acta Pharm Sin B. 2016 Sep;6(5):475-491. Epub 2016 Aug 2.


Effect of nine diets on mRNAs of phase-II conjugation enzymes in livers of mice.

Guo Y, Cui JY, Lu H, Klaassen CD.

Xenobiotica. 2017 Aug;47(8):645-654. doi: 10.1080/00498254.2016.1213926. Epub 2016 Aug 10.


Persistently high prevalence of primary resistance and multidrug resistance of tuberculosis in Heilongjiang Province, China.

Li D, Wang JL, Ji BY, Cui JY, Pan XL, Fan CL, Shao CX, Zhao LN, Ma YP, Zhang LZ, Zhang CL, Dong CB, Hattori T, Ling H.

BMC Infect Dis. 2016 Sep 27;16(1):516.


[Mechanisms of Fufang Shixiao Formula for Experimental Primary Dysmenorrhea].

Ll Q, Xie P, Bai CX, Cui JY, Jiang C, Wu YS.

Zhongguo Zhong Xi Yi Jie He Za Zhi. 2016 Sep;36(9):1087-1090. Chinese.


Editor's Highlight: Neonatal Activation of the Xenobiotic-Sensors PXR and CAR Results in Acute and Persistent Down-regulation of PPARα-Signaling in Mouse Liver.

Li CY, Cheng SL, Bammler TK, Cui JY.

Toxicol Sci. 2016 Oct;153(2):282-302. doi: 10.1093/toxsci/kfw127. Epub 2016 Jul 13.


RNA-Seq reveals common and unique PXR- and CAR-target gene signatures in the mouse liver transcriptome.

Cui JY, Klaassen CD.

Biochim Biophys Acta. 2016 Sep;1859(9):1198-1217. doi: 10.1016/j.bbagrm.2016.04.010. Epub 2016 Apr 23.


RNA Sequencing Quantification of Xenobiotic-Processing Genes in Various Sections of the Intestine in Comparison to the Liver of Male Mice.

Fu ZD, Selwyn FP, Cui JY, Klaassen CD.

Drug Metab Dispos. 2016 Jun;44(6):842-56. doi: 10.1124/dmd.115.068270. Epub 2016 Apr 5.


A New Glabrous Gene (csgl3) Identified in Trichome Development in Cucumber (Cucumis sativus L.).

Cui JY, Miao H, Ding LH, Wehner TC, Liu PN, Wang Y, Zhang SP, Gu XF.

PLoS One. 2016 Feb 4;11(2):e0148422. doi: 10.1371/journal.pone.0148422. eCollection 2016.


Screening of potential biomarkers for cholangiocarcinoma by integrated analysis of microarray data sets.

Huang QX, Cui JY, Ma H, Jia XM, Huang FL, Jiang LX.

Cancer Gene Ther. 2016 Feb-Mar;23(2-3):48-53. doi: 10.1038/cgt.2015.66. Epub 2015 Dec 18.


Regulation of Hepatic Drug-Metabolizing Enzymes in Germ-Free Mice by Conventionalization and Probiotics.

Selwyn FP, Cheng SL, Klaassen CD, Cui JY.

Drug Metab Dispos. 2016 Feb;44(2):262-74. doi: 10.1124/dmd.115.067504. Epub 2015 Nov 19.


Age-Specific Regulation of Drug-Processing Genes in Mouse Liver by Ligands of Xenobiotic-Sensing Transcription Factors.

Li CY, Renaud HJ, Klaassen CD, Cui JY.

Drug Metab Dispos. 2016 Jul;44(7):1038-49. doi: 10.1124/dmd.115.066639. Epub 2015 Nov 17.


Bioconversion of methanol to value-added mevalonate by engineered Methylobacterium extorquens AM1 containing an optimized mevalonate pathway.

Zhu WL, Cui JY, Cui LY, Liang WF, Yang S, Zhang C, Xing XH.

Appl Microbiol Biotechnol. 2016 Mar;100(5):2171-82. doi: 10.1007/s00253-015-7078-z. Epub 2015 Oct 31.


Deciphering the Developmental Dynamics of the Mouse Liver Transcriptome.

Gunewardena SS, Yoo B, Peng L, Lu H, Zhong X, Klaassen CD, Cui JY.

PLoS One. 2015 Oct 23;10(10):e0141220. doi: 10.1371/journal.pone.0141220. eCollection 2015.


The Role of Sirt1 in Bile Acid Regulation during Calorie Restriction in Mice.

Fu ZD, Cui JY, Klaassen CD.

PLoS One. 2015 Sep 15;10(9):e0138307. doi: 10.1371/journal.pone.0138307. eCollection 2015.


Review: Mechanisms of How the Intestinal Microbiota Alters the Effects of Drugs and Bile Acids.

Klaassen CD, Cui JY.

Drug Metab Dispos. 2015 Oct;43(10):1505-21. doi: 10.1124/dmd.115.065698. Epub 2015 Aug 10. Review.


Developmental Regulation of Drug-Processing Genes in Livers of Germ-Free Mice.

Selwyn FP, Cheng SL, Bammler TK, Prasad B, Vrana M, Klaassen C, Cui JY.

Toxicol Sci. 2015 Sep;147(1):84-103. doi: 10.1093/toxsci/kfv110. Epub 2015 Jun 1.


RNA-Seq Quantification of Hepatic Drug Processing Genes in Germ-Free Mice.

Selwyn FP, Cui JY, Klaassen CD.

Drug Metab Dispos. 2015 Oct;43(10):1572-80. doi: 10.1124/dmd.115.063545. Epub 2015 May 8.


Cross-priming amplification targeting the coagulase gene for rapid detection of coagulase-positive Staphylococci.

Qiao B, Cui JY, Sun L, Yang S, Zhao YL.

J Appl Microbiol. 2015 Jul;119(1):188-95. doi: 10.1111/jam.12836. Epub 2015 May 29.


Effect of various diets on the expression of phase-I drug-metabolizing enzymes in livers of mice.

Guo Y, Cui JY, Lu H, Klaassen CD.

Xenobiotica. 2015;45(7):586-97. doi: 10.3109/00498254.2015.1006300. Epub 2015 Mar 3.


[Expression and clinical significance of PDCD5 in patients with acute myeloid leukemia].

Wang LR, Wang M, Cui JY, Zhou HB.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2015 Feb;23(1):24-8. doi: 10.7534/j.issn.1009-2137.2015.01.005. Chinese.


High crude violacein production from glucose by Escherichia coli engineered with interactive control of tryptophan pathway and violacein biosynthetic pathway.

Fang MY, Zhang C, Yang S, Cui JY, Jiang PX, Lou K, Wachi M, Xing XH.

Microb Cell Fact. 2015 Jan 16;14:8. doi: 10.1186/s12934-015-0192-x.

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