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Items: 14

1.

Yam genomics supports West Africa as a major cradle of crop domestication.

Scarcelli N, Cubry P, Akakpo R, Thuillet AC, Obidiegwu J, Baco MN, Otoo E, Sonké B, Dansi A, Djedatin G, Mariac C, Couderc M, Causse S, Alix K, Chaïr H, François O, Vigouroux Y.

Sci Adv. 2019 May 1;5(5):eaaw1947. doi: 10.1126/sciadv.aaw1947. eCollection 2019 May.

2.

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.

Varshney RK, Thudi M, Roorkiwal M, He W, Upadhyaya HD, Yang W, Bajaj P, Cubry P, Rathore A, Jian J, Doddamani D, Khan AW, Garg V, Chitikineni A, Xu D, Gaur PM, Singh NP, Chaturvedi SK, Nadigatla GVPR, Krishnamurthy L, Dixit GP, Fikre A, Kimurto PK, Sreeman SM, Bharadwaj C, Tripathi S, Wang J, Lee SH, Edwards D, Polavarapu KKB, Penmetsa RV, Crossa J, Nguyen HT, Siddique KHM, Colmer TD, Sutton T, von Wettberg E, Vigouroux Y, Xu X, Liu X.

Nat Genet. 2019 May;51(5):857-864. doi: 10.1038/s41588-019-0401-3. Epub 2019 Apr 29.

PMID:
31036963
3.

QTL detection for growth and latex production in a full-sib rubber tree population cultivated under suboptimal climate conditions.

Rosa JRBF, Mantello CC, Garcia D, de Souza LM, da Silva CC, Gazaffi R, da Silva CC, Toledo-Silva G, Cubry P, Garcia AAF, de Souza AP, Le Guen V.

BMC Plant Biol. 2018 Oct 10;18(1):223. doi: 10.1186/s12870-018-1450-y.

4.

A western Sahara centre of domestication inferred from pearl millet genomes.

Burgarella C, Cubry P, Kane NA, Varshney RK, Mariac C, Liu X, Shi C, Thudi M, Couderc M, Xu X, Chitikineni A, Scarcelli N, Barnaud A, Rhoné B, Dupuy C, François O, Berthouly-Salazar C, Vigouroux Y.

Nat Ecol Evol. 2018 Sep;2(9):1377-1380. doi: 10.1038/s41559-018-0643-y. Epub 2018 Aug 6.

PMID:
30082736
5.

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.

Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, Sabot F, Vigouroux Y.

Curr Biol. 2018 Jul 23;28(14):2274-2282.e6. doi: 10.1016/j.cub.2018.05.066. Epub 2018 Jul 5.

6.

The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences.

Cubry P, Vigouroux Y, François O.

Front Genet. 2017 Sep 29;8:139. doi: 10.3389/fgene.2017.00139. eCollection 2017.

7.

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.

8.

Generalization of the QST framework in hierarchically structured populations: Impacts of inbreeding and dominance.

Cubry P, Scotti I, Oddou-Muratorio S, Lefèvre F.

Mol Ecol Resour. 2017 Nov;17(6):e76-e83. doi: 10.1111/1755-0998.12693. Epub 2017 Aug 3.

PMID:
28681534
9.

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora.

Leroy T, De Bellis F, Legnate H, Musoli P, Kalonji A, Loor Solórzano RG, Cubry P.

Genetica. 2014 Jun;142(3):185-99. doi: 10.1007/s10709-014-9766-5. Epub 2014 May 4.

PMID:
24792040
10.

An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis.

Cubry P, de Bellis F, Avia K, Bouchet S, Pot D, Dufour M, Legnate H, Leroy T.

BMC Genomics. 2013 Jan 16;14:10. doi: 10.1186/1471-2164-14-10.

11.

Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers.

Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N, Rouard M, Arnaud E, Kolesnikova-Allen M, Perrier X.

Ann Bot. 2012 Apr;109(5):937-51. doi: 10.1093/aob/mcs010. Epub 2012 Feb 9.

12.

Impact of past climatic and recent anthropogenic factors on wild yam genetic diversity.

Chaïr H, Duroy PO, Cubry P, Sinsin B, Pham JL.

Mol Ecol. 2011 Apr;20(8):1612-23. doi: 10.1111/j.1365-294X.2011.05041.x. Epub 2011 Mar 2.

PMID:
21366748
13.

Genetic differentiation of wild and cultivated populations: diversity of Coffea canephora Pierre in Uganda.

Musoli P, Cubry P, Aluka P, Billot C, Dufour M, De Bellis F, Pot D, Bieysse D, Charrier A, Leroy T.

Genome. 2009 Jul;52(7):634-46. doi: 10.1139/G09-037.

PMID:
19767894
14.

Diversity in coffee assessed with SSR markers: structure of the genus Coffea and perspectives for breeding.

Cubry P, Musoli P, Legnaté H, Pot D, de Bellis F, Poncet V, Anthony F, Dufour M, Leroy T.

Genome. 2008 Jan;51(1):50-63. doi: 10.1139/g07-096.

PMID:
18356939

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