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Items: 26


Bioprospecting for brewers: Exploiting natural diversity for naturally diverse beers.

Cubillos FA, Gibson B, Grijalva-Vallejos N, Krogerus K, Nikulin J.

Yeast. 2019 Jan 30. doi: 10.1002/yea.3380. [Epub ahead of print]


GPD1 and ADH3 Natural Variants Underlie Glycerol Yield Differences in Wine Fermentation.

Tapia SM, Cuevas M, Abarca V, Delgado V, Rojas V, García V, Brice C, Martínez C, Salinas F, Larrondo LF, Cubillos FA.

Front Microbiol. 2018 Jul 3;9:1460. doi: 10.3389/fmicb.2018.01460. eCollection 2018.


Adaptability of the Saccharomyces cerevisiae yeasts to wine fermentation conditions relies on their strong ability to consume nitrogen.

Brice C, Cubillos FA, Dequin S, Camarasa C, Martínez C.

PLoS One. 2018 Feb 12;13(2):e0192383. doi: 10.1371/journal.pone.0192383. eCollection 2018.


Genetic basis of mycotoxin susceptibility differences between budding yeast isolates.

Quispe X, Tapia SM, Villarroel C, Oporto C, Abarca V, García V, Martínez C, Cubillos FA.

Sci Rep. 2017 Aug 23;7(1):9173. doi: 10.1038/s41598-017-09471-z.


Genomics Perspectives on Metabolism, Survival Strategies, and Biotechnological Applications of Brettanomyces bruxellensis LAMAP2480.

Godoy L, Silva-Moreno E, Mardones W, Guzman D, Cubillos FA, Ganga A.

J Mol Microbiol Biotechnol. 2017;27(3):147-158. doi: 10.1159/000471924. Epub 2017 Jun 9.


Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses.

Cubillos FA, Brice C, Molinet J, Tisné S, Abarca V, Tapia SM, Oporto C, García V, Liti G, Martínez C.

G3 (Bethesda). 2017 Jun 7;7(6):1693-1705. doi: 10.1534/g3.117.042127.


Natural gene expression variation studies in yeast.

Thompson DA, Cubillos FA.

Yeast. 2017 Jan;34(1):3-17. doi: 10.1002/yea.3210. Epub 2016 Nov 23. Review.


Exploiting budding yeast natural variation for industrial processes.

Cubillos FA.

Curr Genet. 2016 Nov;62(4):745-751. Epub 2016 Apr 16. Review.


RIM15 antagonistic pleiotropy is responsible for differences in fermentation and stress response kinetics in budding yeast.

Kessi-Pérez EI, Araos S, García V, Salinas F, Abarca V, Larrondo LF, Martínez C, Cubillos FA.

FEMS Yeast Res. 2016 May;16(3). pii: fow021. doi: 10.1093/femsyr/fow021. Epub 2016 Mar 4.


Natural variation in non-coding regions underlying phenotypic diversity in budding yeast.

Salinas F, de Boer CG, Abarca V, García V, Cuevas M, Araos S, Larrondo LF, Martínez C, Cubillos FA.

Sci Rep. 2016 Feb 22;6:21849. doi: 10.1038/srep21849.


Extensive cis-regulatory variation robust to environmental perturbation in Arabidopsis.

Cubillos FA, Stegle O, Grondin C, Canut M, Tisné S, Gy I, Loudet O.

Plant Cell. 2014 Nov;26(11):4298-310. doi: 10.1105/tpc.114.130310. Epub 2014 Nov 26.


Draft genome sequence and transcriptome analysis of the wine spoilage yeast Dekkera bruxellensis LAMAP2480 provides insights into genetic diversity, metabolism and survival.

Valdes J, Tapia P, Cepeda V, Varela J, Godoy L, Cubillos FA, Silva E, Martinez C, Ganga MA.

FEMS Microbiol Lett. 2014 Dec;361(2):104-6.


Mapping genetic variants underlying differences in the central nitrogen metabolism in fermenter yeasts.

Jara M, Cubillos FA, García V, Salinas F, Aguilera O, Liti G, Martínez C.

PLoS One. 2014 Jan 21;9(1):e86533. doi: 10.1371/journal.pone.0086533. eCollection 2014.


SHOOT GROWTH1 maintains Arabidopsis epigenomes by regulating IBM1.

Coustham V, Vlad D, Deremetz A, Gy I, Cubillos FA, Kerdaffrec E, Loudet O, Bouché N.

PLoS One. 2014 Jan 3;9(1):e84687. doi: 10.1371/journal.pone.0084687. eCollection 2014.


High-resolution mapping of complex traits with a four-parent advanced intercross yeast population.

Cubillos FA, Parts L, Salinas F, Bergström A, Scovacricchi E, Zia A, Illingworth CJ, Mustonen V, Ibstedt S, Warringer J, Louis EJ, Durbin R, Liti G.

Genetics. 2013 Nov;195(3):1141-55. doi: 10.1534/genetics.113.155515. Epub 2013 Sep 13.


High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.

Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA.

BMC Genomics. 2013 Jan 31;14:69. doi: 10.1186/1471-2164-14-69.


The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae.

Salinas F, Cubillos FA, Soto D, Garcia V, Bergström A, Warringer J, Ganga MA, Louis EJ, Liti G, Martinez C.

PLoS One. 2012;7(11):e49640. doi: 10.1371/journal.pone.0049640. Epub 2012 Nov 21.


Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures.

Cubillos FA, Yansouni J, Khalili H, Balzergue S, Elftieh S, Martin-Magniette ML, Serrand Y, Lepiniec L, Baud S, Dubreucq B, Renou JP, Camilleri C, Loudet O.

BMC Genomics. 2012 Mar 27;13:117. doi: 10.1186/1471-2164-13-117.


Life history shapes trait heredity by accumulation of loss-of-function alleles in yeast.

Zörgö E, Gjuvsland A, Cubillos FA, Louis EJ, Liti G, Blomberg A, Omholt SW, Warringer J.

Mol Biol Evol. 2012 Jul;29(7):1781-9. doi: 10.1093/molbev/mss019. Epub 2012 Jan 20.


Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants.

Cubillos FA, Coustham V, Loudet O.

Curr Opin Plant Biol. 2012 Apr;15(2):192-8. doi: 10.1016/j.pbi.2012.01.005. Epub 2012 Jan 20. Review.


Trait variation in yeast is defined by population history.

Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A.

PLoS Genet. 2011 Jun;7(6):e1002111. doi: 10.1371/journal.pgen.1002111. Epub 2011 Jun 16.


Revealing the genetic structure of a trait by sequencing a population under selection.

Parts L, Cubillos FA, Warringer J, Jain K, Salinas F, Bumpstead SJ, Molin M, Zia A, Simpson JT, Quail MA, Moses A, Louis EJ, Durbin R, Liti G.

Genome Res. 2011 Jul;21(7):1131-8. doi: 10.1101/gr.116731.110. Epub 2011 Mar 21.


Assessing the complex architecture of polygenic traits in diverged yeast populations.

Cubillos FA, Billi E, Zörgö E, Parts L, Fargier P, Omholt S, Blomberg A, Warringer J, Louis EJ, Liti G.

Mol Ecol. 2011 Apr;20(7):1401-13. doi: 10.1111/j.1365-294X.2011.05005.x. Epub 2011 Jan 25.


Generation of a large set of genetically tractable haploid and diploid Saccharomyces strains.

Cubillos FA, Louis EJ, Liti G.

FEMS Yeast Res. 2009 Dec;9(8):1217-25. doi: 10.1111/j.1567-1364.2009.00583.x. Epub 2009 Sep 17.


Segregating YKU80 and TLC1 alleles underlying natural variation in telomere properties in wild yeast.

Liti G, Haricharan S, Cubillos FA, Tierney AL, Sharp S, Bertuch AA, Parts L, Bailes E, Louis EJ.

PLoS Genet. 2009 Sep;5(9):e1000659. doi: 10.1371/journal.pgen.1000659. Epub 2009 Sep 18.


Self-fertilization is the main sexual reproduction mechanism in native wine yeast populations.

Cubillos FA, Vásquez C, Faugeron S, Ganga A, Martínez C.

FEMS Microbiol Ecol. 2009 Jan;67(1):162-70. doi: 10.1111/j.1574-6941.2008.00600.x. Epub 2008 Nov 7.

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