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Items: 1 to 50 of 109

1.

Shape-based separation of synthetic microparticles.

Mage PL, Csordas AT, Brown T, Klinger D, Eisenstein M, Mitragotri S, Hawker C, Soh HT.

Nat Mater. 2019 Jan;18(1):82-89. doi: 10.1038/s41563-018-0244-9. Epub 2018 Dec 10.

PMID:
30542094
2.

The PRIDE database and related tools and resources in 2019: improving support for quantification data.

Perez-Riverol Y, Csordas A, Bai J, Bernal-Llinares M, Hewapathirana S, Kundu DJ, Inuganti A, Griss J, Mayer G, Eisenacher M, Pérez E, Uszkoreit J, Pfeuffer J, Sachsenberg T, Yilmaz S, Tiwary S, Cox J, Audain E, Walzer M, Jarnuczak AF, Ternent T, Brazma A, Vizcaíno JA.

Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450. doi: 10.1093/nar/gky1106.

3.

Strategy for Generating Sequence-Defined Aptamer Reagent Sets for Detecting Protein Contaminants in Biotherapeutics.

McGivney JB 4th, Csordas AT, Walker FM, Bagley ER, Gruber EM, Mage PL, Casas-Finet J, Nakamoto MA, Eisenstein M, Larkin CJ, Strouse RJ, Soh HT.

Anal Chem. 2018 Mar 6;90(5):3262-3269. doi: 10.1021/acs.analchem.7b04775. Epub 2018 Feb 13.

PMID:
29436820
4.

Radiological survey of the covered and uncovered drilling mud depository.

Jónás J, Somlai J, Csordás A, Tóth-Bodrogi E, Kovács T.

J Environ Radioact. 2018 Aug;188:30-37. doi: 10.1016/j.jenvrad.2017.10.020. Epub 2017 Nov 2.

PMID:
29103632
5.

Preliminary Results of Radon Survey in the Kindergartens of V4 Countries.

Müllerová M, Mazur J, Csordás A, Grzadziel D, Holý K, Kovács T, Kozak K, Kureková P, Nagy E, Neznal M, Smetanová I.

Radiat Prot Dosimetry. 2017 Nov 1;177(1-2):95-98. doi: 10.1093/rpd/ncx155.

PMID:
29036677
6.

Radon measurements and dose estimate of workers in a manganese ore mine.

Shahrokhi A, Vigh T, Németh C, Csordás A, Kovács T.

Appl Radiat Isot. 2017 Jun;124:32-37. doi: 10.1016/j.apradiso.2017.02.047. Epub 2017 Mar 10.

PMID:
28314163
7.

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.

Deutsch EW, Csordas A, Sun Z, Jarnuczak A, Perez-Riverol Y, Ternent T, Campbell DS, Bernal-Llinares M, Okuda S, Kawano S, Moritz RL, Carver JJ, Wang M, Ishihama Y, Bandeira N, Hermjakob H, Vizcaíno JA.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1100-D1106. doi: 10.1093/nar/gkw936. Epub 2016 Oct 18.

8.

High-Throughput Discovery of Aptamers for Sandwich Assays.

Csordas AT, Jørgensen A, Wang J, Gruber E, Gong Q, Bagley ER, Nakamoto MA, Eisenstein M, Soh HT.

Anal Chem. 2016 Nov 15;88(22):10842-10847. Epub 2016 Nov 4.

PMID:
27813404
9.

2016 update of the PRIDE database and its related tools.

Vizcaíno JA, Csordas A, Del-Toro N, Dianes JA, Griss J, Lavidas I, Mayer G, Perez-Riverol Y, Reisinger F, Ternent T, Xu QW, Wang R, Hermjakob H.

Nucleic Acids Res. 2016 Dec 15;44(22):11033. Epub 2016 Sep 28. No abstract available.

10.

Advancements in Aptamer Discovery Technologies.

Gotrik MR, Feagin TA, Csordas AT, Nakamoto MA, Soh HT.

Acc Chem Res. 2016 Sep 20;49(9):1903-10. doi: 10.1021/acs.accounts.6b00283. Epub 2016 Aug 15.

PMID:
27526193
11.

Impact of postdilatation on performance of bioresorbable vascular scaffolds in patients with acute coronary syndrome compared with everolimus-eluting stents: A propensity score-matched analysis from a multicenter "real-world" registry.

Imori Y, D'Ascenzo F, Gori T, Münzel T, Fabrizio U, Campo G, Cerrato E, Napp LC, Iannaccone M, Ghadri JR, Kazemian E, Binder RK, Jaguszewski M, Csordas A, Capasso P, Biscaglia S, Conrotto F, Varbella F, Garbo R, Gaita F, Erne P, Lüscher TF, Moretti C, Frangieh AH, Templin C.

Cardiol J. 2016;23(4):374-83. doi: 10.5603/CJ.a2016.0052. Epub 2016 Aug 12.

12.

Rapid and Label-Free Strategy to Isolate Aptamers for Metal Ions.

Qu H, Csordas AT, Wang J, Oh SS, Eisenstein MS, Soh HT.

ACS Nano. 2016 Aug 23;10(8):7558-65. doi: 10.1021/acsnano.6b02558. Epub 2016 Jul 11.

13.

Indoor radon survey in Visegrad countries.

Műllerová M, Kozak K, Kovács T, Smetanová I, Csordás A, Grzadziel D, Holý K, Mazur J, Moravcsík A, Neznal M, Neznal M.

Appl Radiat Isot. 2016 Apr;110:124-128. doi: 10.1016/j.apradiso.2016.01.010. Epub 2016 Jan 8.

PMID:
26774389
14.

Midregional Proadrenomedullin Improves Risk Stratification beyond Surgical Risk Scores in Patients Undergoing Transcatheter Aortic Valve Replacement.

Csordas A, Nietlispach F, Schuetz P, Huber A, Müller B, Maisano F, Taramasso M, Moarof I, Obeid S, Stähli BE, Cahenzly M, Binder RK, Liebetrau C, Möllmann H, Kim WK, Hamm C, Lüscher TF.

PLoS One. 2015 Dec 2;10(12):e0143761. doi: 10.1371/journal.pone.0143761. eCollection 2015.

15.

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets.

Perez-Riverol Y, Xu QW, Wang R, Uszkoreit J, Griss J, Sanchez A, Reisinger F, Csordas A, Ternent T, Del-Toro N, Dianes JA, Eisenacher M, Hermjakob H, Vizcaíno JA.

Mol Cell Proteomics. 2016 Jan;15(1):305-17. doi: 10.1074/mcp.O115.050229. Epub 2015 Nov 6.

16.

The Cumulative Analysis of Checklist Questionnaires Filled Out by the Hungarian HTA Office.

Nemeth B, Csordas A, Papp E.

Value Health. 2015 Nov;18(7):A562. doi: 10.1016/j.jval.2015.09.1831. Epub 2015 Oct 20. No abstract available.

17.

2016 update of the PRIDE database and its related tools.

Vizcaíno JA, Csordas A, del-Toro N, Dianes JA, Griss J, Lavidas I, Mayer G, Perez-Riverol Y, Reisinger F, Ternent T, Xu QW, Wang R, Hermjakob H.

Nucleic Acids Res. 2016 Jan 4;44(D1):D447-56. doi: 10.1093/nar/gkv1145. Epub 2015 Nov 2. Erratum in: Nucleic Acids Res. 2016 Dec 15;44(22):11033.

18.

Exploring the potential of public proteomics data.

Vaudel M, Verheggen K, Csordas A, Raeder H, Berven FS, Martens L, Vizcaíno JA, Barsnes H.

Proteomics. 2016 Jan;16(2):214-25. doi: 10.1002/pmic.201500295. Epub 2015 Dec 15. Review.

19.

Preparation and characterisation of ceramic-based thoron sources for thoron calibration chamber.

Csordás A, Fábián F, Horváth M, Hegedűs M, Somlai J, Kovács T.

Radiat Prot Dosimetry. 2015 Nov;167(1-3):151-4. doi: 10.1093/rpd/ncv234. Epub 2015 Apr 27.

PMID:
25920779
20.

Gender disparities in acute coronary syndrome: a closing gap in the short-term outcome.

Ghadri JR, Sarcon A, Jaguszewski M, Diekmann J, Bataiosu RD, Hellermann J, Csordas A, Baumann L, Schöni AA, Lüscher TF, Templin C.

J Cardiovasc Med (Hagerstown). 2015 May;16(5):355-62. doi: 10.2459/JCM.0000000000000248.

21.

Pancreatic stone protein predicts postoperative infection in cardiac surgery patients irrespective of cardiopulmonary bypass or surgical technique.

Klein HJ, Csordas A, Falk V, Slankamenac K, Rudiger A, Schönrath F, Rodriguez Cetina Biefer H, Starck CT, Graf R.

PLoS One. 2015 Mar 20;10(3):e0120276. doi: 10.1371/journal.pone.0120276. eCollection 2015.

22.

How to submit MS proteomics data to ProteomeXchange via the PRIDE database.

Ternent T, Csordas A, Qi D, Gómez-Baena G, Beynon RJ, Jones AR, Hermjakob H, Vizcaíno JA.

Proteomics. 2014 Oct;14(20):2233-41. doi: 10.1002/pmic.201400120. Epub 2014 Aug 21.

23.

ProteomeXchange provides globally coordinated proteomics data submission and dissemination.

Vizcaíno JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Ríos D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HJ, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H.

Nat Biotechnol. 2014 Mar;32(3):223-6. doi: 10.1038/nbt.2839. No abstract available.

24.

Preliminary results of indoor radon survey in V4 countries.

Muűllerová M, Kozak K, Kovács T, Csordás A, Grzadziel D, Holý K, Mazur J, Moravcsík A, Neznal M, Neznal M, Smetanová I.

Radiat Prot Dosimetry. 2014 Jul;160(1-3):210-3. doi: 10.1093/rpd/ncu081. Epub 2014 Apr 10.

PMID:
24723197
25.

Calibration of CR-39-based thoron progeny device.

Fábián F, Csordás A, Shahrokhi A, Somlai J, Kovács T.

Radiat Prot Dosimetry. 2014 Jul;160(1-3):169-72. doi: 10.1093/rpd/ncu072. Epub 2014 Apr 9.

PMID:
24723185
26.

Simultaneous elimination of carryover contamination and detection of DNA with uracil-DNA-glycosylase-supplemented loop-mediated isothermal amplification (UDG-LAMP).

Hsieh K, Mage PL, Csordas AT, Eisenstein M, Soh HT.

Chem Commun (Camb). 2014 Apr 11;50(28):3747-9. doi: 10.1039/c4cc00540f. Epub 2014 Feb 28.

PMID:
24577617
27.

The prevalence of obesity is increased in patients with late compared with early onset psoriasis.

Herédi E, Csordás A, Clemens M, Adám B, Gáspár K, Törőcsik D, Nagy G, Adány R, Gaál J, Remenyik E, Szegedi A.

Ann Epidemiol. 2013 Nov;23(11):688-92. doi: 10.1016/j.annepidem.2013.08.006. Epub 2013 Oct 4.

PMID:
24095656
28.

LongevityMap: a database of human genetic variants associated with longevity.

Budovsky A, Craig T, Wang J, Tacutu R, Csordas A, Lourenço J, Fraifeld VE, de Magalhães JP.

Trends Genet. 2013 Oct;29(10):559-60. doi: 10.1016/j.tig.2013.08.003. Epub 2013 Aug 30.

PMID:
23998809
29.

Neurons in the basal forebrain project to the cortex in a complex topographic organization that reflects corticocortical connectivity patterns: an experimental study based on retrograde tracing and 3D reconstruction.

Zaborszky L, Csordas A, Mosca K, Kim J, Gielow MR, Vadasz C, Nadasdy Z.

Cereb Cortex. 2015 Jan;25(1):118-37. doi: 10.1093/cercor/bht210. Epub 2013 Aug 19.

30.

Public health services provided in the framework of general practitioners' clusters.

Sándor J, Kósa K, Fürjes G, Papp M, Csordás Á, Rurik I, Ádány R.

Eur J Public Health. 2013 Aug;23(4):530-2. doi: 10.1093/eurpub/ckt096. No abstract available.

PMID:
23882117
31.

From Peptidome to PRIDE: public proteomics data migration at a large scale.

Csordas A, Wang R, Ríos D, Reisinger F, Foster JM, Slotta DJ, Vizcaíno JA, Hermjakob H.

Proteomics. 2013 May;13(10-11):1692-5. doi: 10.1002/pmic.201200514. Epub 2013 Apr 20.

32.

The biology behind the atherothrombotic effects of cigarette smoke.

Csordas A, Bernhard D.

Nat Rev Cardiol. 2013 Apr;10(4):219-30. doi: 10.1038/nrcardio.2013.8. Epub 2013 Feb 5. Review.

PMID:
23380975
33.

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework.

Lewis S, Csordas A, Killcoyne S, Hermjakob H, Hoopmann MR, Moritz RL, Deutsch EW, Boyle J.

BMC Bioinformatics. 2012 Dec 5;13:324. doi: 10.1186/1471-2105-13-324.

34.

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.

Vizcaíno JA, Côté RG, Csordas A, Dianes JA, Fabregat A, Foster JM, Griss J, Alpi E, Birim M, Contell J, O'Kelly G, Schoenegger A, Ovelleiro D, Pérez-Riverol Y, Reisinger F, Ríos D, Wang R, Hermjakob H.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1063-9. doi: 10.1093/nar/gks1262. Epub 2012 Nov 29.

35.

Chlamydia pneumoniae infection acts as an endothelial stressor with the potential to initiate the earliest heat shock protein 60-dependent inflammatory stage of atherosclerosis.

Kreutmayer S, Csordas A, Kern J, Maass V, Almanzar G, Offterdinger M, Öllinger R, Maass M, Wick G.

Cell Stress Chaperones. 2013 May;18(3):259-68. doi: 10.1007/s12192-012-0378-7. Epub 2012 Nov 29.

36.

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium.

Côté RG, Griss J, Dianes JA, Wang R, Wright JC, van den Toorn HW, van Breukelen B, Heck AJ, Hulstaert N, Martens L, Reisinger F, Csordas A, Ovelleiro D, Perez-Rivevol Y, Barsnes H, Hermjakob H, Vizcaíno JA.

Mol Cell Proteomics. 2012 Dec;11(12):1682-9. doi: 10.1074/mcp.O112.021543. Epub 2012 Sep 4.

37.

Preliminary results from an indoor radon thoron survey in Hungary.

Szeiler G, Somlai J, Ishikawa T, Omori Y, Mishra R, Sapra BK, Mayya YS, Tokonami S, Csordás A, Kovács T.

Radiat Prot Dosimetry. 2012 Nov;152(1-3):243-6. doi: 10.1093/rpd/ncs231. Epub 2012 Aug 26.

PMID:
22927648
38.

Selection strategy to generate aptamer pairs that bind to distinct sites on protein targets.

Gong Q, Wang J, Ahmad KM, Csordas AT, Zhou J, Nie J, Stewart R, Thomson JA, Rossi JJ, Soh HT.

Anal Chem. 2012 Jun 19;84(12):5365-71. doi: 10.1021/ac300873p. Epub 2012 Jun 8.

39.

PRIDE: quality control in a proteomics data repository.

Csordas A, Ovelleiro D, Wang R, Foster JM, Ríos D, Vizcaíno JA, Hermjakob H.

Database (Oxford). 2012 Mar 20;2012:bas004. doi: 10.1093/database/bas004. Print 2012.

40.

PRIDE Inspector: a tool to visualize and validate MS proteomics data.

Wang R, Fabregat A, Ríos D, Ovelleiro D, Foster JM, Côté RG, Griss J, Csordas A, Perez-Riverol Y, Reisinger F, Hermjakob H, Martens L, Vizcaíno JA.

Nat Biotechnol. 2012 Feb 8;30(2):135-7. doi: 10.1038/nbt.2112. No abstract available.

41.

Measurement of aptamer-protein interactions with back-scattering interferometry.

Olmsted IR, Xiao Y, Cho M, Csordas AT, Sheehan JH, Meiler J, Soh HT, Bornhop DJ.

Anal Chem. 2011 Dec 1;83(23):8867-70. doi: 10.1021/ac202823m. Epub 2011 Nov 8.

PMID:
22032342
42.

Cigarette smoke extract induces prolonged endoplasmic reticulum stress and autophagic cell death in human umbilical vein endothelial cells.

Csordas A, Kreutmayer S, Ploner C, Braun PR, Karlas A, Backovic A, Wick G, Bernhard D.

Cardiovasc Res. 2011 Oct 1;92(1):141-8. doi: 10.1093/cvr/cvr165. Epub 2011 Jun 14.

PMID:
21676957
43.

Selection of phage-displayed peptides on live adherent cells in microfluidic channels.

Wang J, Liu Y, Teesalu T, Sugahara KN, Kotamrajua VR, Adams JD, Ferguson BS, Gong Q, Oh SS, Csordas AT, Cho M, Ruoslahti E, Xiao Y, Soh HT.

Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6909-14. doi: 10.1073/pnas.1014753108. Epub 2011 Apr 12.

44.

Revisiting the past: intra-arterial vasopressin for severe gastrointestinal bleeding in Crohn's disease.

Alla VM, Ojili V, Gorthi J, Csordas A, Yellapu RK.

J Crohns Colitis. 2010 Oct;4(4):479-82. doi: 10.1016/j.crohns.2010.02.011. Epub 2010 Mar 29.

PMID:
21122547
45.

Detection of telomerase activity in high concentration of cell lysates using primer-modified gold nanoparticles.

Xiao Y, Dane KY, Uzawa T, Csordas A, Qian J, Soh HT, Daugherty PS, Lagally ET, Heeger AJ, Plaxco KW.

J Am Chem Soc. 2010 Nov 3;132(43):15299-307. doi: 10.1021/ja106513f.

PMID:
20932008
46.

Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing.

Cho M, Xiao Y, Nie J, Stewart R, Csordas AT, Oh SS, Thomson JA, Soh HT.

Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15373-8. doi: 10.1073/pnas.1009331107. Epub 2010 Aug 12. Erratum in: Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5472.

47.

Protein kinase Cgamma in colon cancer cells: expression, Thr514 phosphorylation and sensitivity to butyrate-mediated upregulation as related to the degree of differentiation.

Garczarczyk D, Szeker K, Galfi P, Csordas A, Hofmann J.

Chem Biol Interact. 2010 Apr 15;185(1):25-32. doi: 10.1016/j.cbi.2010.02.035. Epub 2010 Feb 25.

48.

Detection of proteins in serum by micromagnetic aptamer PCR (MAP) technology.

Csordas A, Gerdon AE, Adams JD, Qian J, Oh SS, Xiao Y, Soh HT.

Angew Chem Int Ed Engl. 2010;49(2):355-8. doi: 10.1002/anie.200904846. No abstract available.

PMID:
19967683
49.

Butyrate-induced cell death and differentiation are associated with distinct patterns of ROS in HT29-derived human colon cancer cells.

Domokos M, Jakus J, Szeker K, Csizinszky R, Csiko G, Neogrady Z, Csordas A, Galfi P.

Dig Dis Sci. 2010 Apr;55(4):920-30. doi: 10.1007/s10620-009-0820-6. Epub 2009 May 12.

PMID:
19434493
50.

Rapid 'glycaemic swings' induce nitrosative stress, activate poly(ADP-ribose) polymerase and impair endothelial function in a rat model of diabetes mellitus.

Horváth EM, Benko R, Kiss L, Murányi M, Pék T, Fekete K, Bárány T, Somlai A, Csordás A, Szabo C.

Diabetologia. 2009 May;52(5):952-61. doi: 10.1007/s00125-009-1304-0. Epub 2009 Mar 5.

PMID:
19263033

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