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Items: 38

1.

Worldwide human mitochondrial haplogroup distribution from urban sewage.

Pipek OA, Medgyes-Horváth A, Dobos L, Stéger J, Szalai-Gindl J, Visontai D, Kaas RS, Koopmans M, Hendriksen RS, Aarestrup FM, Csabai I.

Sci Rep. 2019 Aug 12;9(1):11624. doi: 10.1038/s41598-019-48093-5.

2.

Corrigendum to: Breast cancer brain metastases show increased levels of genomic aberration-based homologous recombination deficiency scores relative to their corresponding primary tumors.

Diossy M, Reiniger L, Sztupinszki Z, Krzystanek M, Timms KM, Neff C, Solimeno C, Pruss D, Eklund AC, Tóth E, Kiss O, Rusz O, Cserni G, Zombori T, Székely B, Kulka J, Tímár J, Csabai I, Szallasi Z.

Ann Oncol. 2019 Mar 30. pii: mdz081. doi: 10.1093/annonc/mdz081. [Epub ahead of print] No abstract available.

3.

The genomic imprint of cancer therapies helps timing the formation of metastases.

Németh E, Krzystanek M, Reiniger L, Ribli D, Pipek O, Sztupinszki Z, Glasz T, Csabai I, Moldvay J, Szallasi Z, Szüts D.

Int J Cancer. 2019 Aug 1;145(3):694-704. doi: 10.1002/ijc.32159. Epub 2019 Feb 18.

PMID:
30694556
4.

[Potential applications of deep learning-based technologies in Hungarian mammography].

Ribli D, Zsuppán R, Pollner P, Horváth A, Bánsághi Z, Csabai I, Bérczi V, Unger Z.

Orv Hetil. 2019 Jan;160(4):138-143. doi: 10.1556/650.2019.31263. Hungarian.

PMID:
30661383
5.

New insights into the impact of primary lung adenocarcinoma location on metastatic sites and sequence: A multicenter cohort study.

Klikovits T, Lohinai Z, Fábián K, Gyulai M, Szilasi M, Varga J, Baranya E, Pipek O, Csabai I, Szállási Z, Tímár J, Hoda MA, Laszlo V, Hegedűs B, Renyi-Vamos F, Klepetko W, Ostoros G, Döme B, Moldvay J.

Lung Cancer. 2018 Dec;126:139-148. doi: 10.1016/j.lungcan.2018.11.004. Epub 2018 Nov 5.

PMID:
30527178
6.

Long-term treatment with the PARP inhibitor niraparib does not increase the mutation load in cell line models and tumour xenografts.

Póti Á, Berta K, Xiao Y, Pipek O, Klus GT, Ried T, Csabai I, Wilcoxen K, Mikule K, Szallasi Z, Szüts D.

Br J Cancer. 2018 Nov;119(11):1392-1400. doi: 10.1038/s41416-018-0312-6. Epub 2018 Nov 14.

7.

Migrating the SNP array-based homologous recombination deficiency measures to next generation sequencing data of breast cancer.

Sztupinszki Z, Diossy M, Krzystanek M, Reiniger L, Csabai I, Favero F, Birkbak NJ, Eklund AC, Syed A, Szallasi Z.

NPJ Breast Cancer. 2018 Jul 2;4:16. doi: 10.1038/s41523-018-0066-6. eCollection 2018.

8.

Gene promoter and exon DNA methylation changes in colon cancer development - mRNA expression and tumor mutation alterations.

Molnár B, Galamb O, Péterfia B, Wichmann B, Csabai I, Bodor A, Kalmár A, Szigeti KA, Barták BK, Nagy ZB, Valcz G, Patai ÁV, Igaz P, Tulassay Z.

BMC Cancer. 2018 Jun 27;18(1):695. doi: 10.1186/s12885-018-4609-x.

9.

Breast cancer brain metastases show increased levels of genomic aberration-based homologous recombination deficiency scores relative to their corresponding primary tumors.

Diossy M, Reiniger L, Sztupinszki Z, Krzystanek M, Timms KM, Neff C, Solimeno C, Pruss D, Eklund AC, Tóth E, Kiss O, Rusz O, Cserni G, Zombori T, Székely B, Tímár J, Csabai I, Szallasi Z.

Ann Oncol. 2018 Sep 1;29(9):1948-1954. doi: 10.1093/annonc/mdy216. Erratum in: Ann Oncol. 2019 Mar 30;:.

10.

A Somatically Acquired Enhancer of the Androgen Receptor Is a Noncoding Driver in Advanced Prostate Cancer.

Takeda DY, Spisák S, Seo JH, Bell C, O'Connor E, Korthauer K, Ribli D, Csabai I, Solymosi N, Szállási Z, Stillman DR, Cejas P, Qiu X, Long HW, Tisza V, Nuzzo PV, Rohanizadegan M, Pomerantz MM, Hahn WC, Freedman ML.

Cell. 2018 Jul 12;174(2):422-432.e13. doi: 10.1016/j.cell.2018.05.037. Epub 2018 Jun 14.

11.

Deterministic Evolutionary Trajectories Influence Primary Tumor Growth: TRACERx Renal.

Turajlic S, Xu H, Litchfield K, Rowan A, Horswell S, Chambers T, O'Brien T, Lopez JI, Watkins TBK, Nicol D, Stares M, Challacombe B, Hazell S, Chandra A, Mitchell TJ, Au L, Eichler-Jonsson C, Jabbar F, Soultati A, Chowdhury S, Rudman S, Lynch J, Fernando A, Stamp G, Nye E, Stewart A, Xing W, Smith JC, Escudero M, Huffman A, Matthews N, Elgar G, Phillimore B, Costa M, Begum S, Ward S, Salm M, Boeing S, Fisher R, Spain L, Navas C, Grönroos E, Hobor S, Sharma S, Aurangzeb I, Lall S, Polson A, Varia M, Horsfield C, Fotiadis N, Pickering L, Schwarz RF, Silva B, Herrero J, Luscombe NM, Jamal-Hanjani M, Rosenthal R, Birkbak NJ, Wilson GA, Pipek O, Ribli D, Krzystanek M, Csabai I, Szallasi Z, Gore M, McGranahan N, Van Loo P, Campbell P, Larkin J, Swanton C; TRACERx Renal Consortium.

Cell. 2018 Apr 19;173(3):595-610.e11. doi: 10.1016/j.cell.2018.03.043. Epub 2018 Apr 12.

12.

Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal.

Mitchell TJ, Turajlic S, Rowan A, Nicol D, Farmery JHR, O'Brien T, Martincorena I, Tarpey P, Angelopoulos N, Yates LR, Butler AP, Raine K, Stewart GD, Challacombe B, Fernando A, Lopez JI, Hazell S, Chandra A, Chowdhury S, Rudman S, Soultati A, Stamp G, Fotiadis N, Pickering L, Au L, Spain L, Lynch J, Stares M, Teague J, Maura F, Wedge DC, Horswell S, Chambers T, Litchfield K, Xu H, Stewart A, Elaidi R, Oudard S, McGranahan N, Csabai I, Gore M, Futreal PA, Larkin J, Lynch AG, Szallasi Z, Swanton C, Campbell PJ; TRACERx Renal Consortium.

Cell. 2018 Apr 19;173(3):611-623.e17. doi: 10.1016/j.cell.2018.02.020. Epub 2018 Apr 12.

13.

Detecting and classifying lesions in mammograms with Deep Learning.

Ribli D, Horváth A, Unger Z, Pollner P, Csabai I.

Sci Rep. 2018 Mar 15;8(1):4165. doi: 10.1038/s41598-018-22437-z.

14.

Loss of BRCA1 or BRCA2 markedly increases the rate of base substitution mutagenesis and has distinct effects on genomic deletions.

Zámborszky J, Szikriszt B, Gervai JZ, Pipek O, Póti Á, Krzystanek M, Ribli D, Szalai-Gindl JM, Csabai I, Szallasi Z, Swanton C, Richardson AL, Szüts D.

Oncogene. 2017 Aug 31;36(35):5085-5086. doi: 10.1038/onc.2017.213. Epub 2017 Jun 26.

15.

The association between germline BRCA2 variants and sensitivity to platinum-based chemotherapy among men with metastatic prostate cancer.

Pomerantz MM, Spisák S, Jia L, Cronin AM, Csabai I, Ledet E, Sartor AO, Rainville I, O'Connor EP, Herbert ZT, Szállási Z, Oh WK, Kantoff PW, Garber JE, Schrag D, Kibel AS, Freedman ML.

Cancer. 2017 Sep 15;123(18):3532-3539. doi: 10.1002/cncr.30808. Epub 2017 Jun 13.

16.

Construction of a multiplex mutation hot spot PCR panel: the first step towards colorectal cancer genotyping on the GS Junior platform.

Péterfia B, Kalmár A, Patai ÁV, Csabai I, Bodor A, Micsik T, Wichmann B, Egedi K, Hollósi P, Kovalszky I, Tulassay Z, Molnár B.

J Cancer. 2017 Jan 12;8(2):162-173. doi: 10.7150/jca.16037. eCollection 2017. Erratum in: J Cancer. 2018 Jul 1;9(15):2743.

17.

Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut.

Pipek O, Ribli D, Molnár J, Póti Á, Krzystanek M, Bodor A, Tusnády GE, Szallasi Z, Csabai I, Szüts D.

BMC Bioinformatics. 2017 Jan 31;18(1):73. doi: 10.1186/s12859-017-1492-4.

18.

Observation of Giant Conductance Fluctuations in a Protein.

Zhang B, Song W, Pang P, Zhao Y, Zhang P, Csabai I, Vattay G, Lindsay S.

Nano Futures. 2017;1(3). pii: 035002. doi: 10.1088/2399-1984/aa8f91. Epub 2017 Nov 6.

19.

Loss of BRCA1 or BRCA2 markedly increases the rate of base substitution mutagenesis and has distinct effects on genomic deletions.

Zámborszky J, Szikriszt B, Gervai JZ, Pipek O, Póti Á, Krzystanek M, Ribli D, Szalai-Gindl JM, Csabai I, Szallasi Z, Swanton C, Richardson AL, Szüts D.

Oncogene. 2017 Feb 9;36(6):746-755. doi: 10.1038/onc.2016.243. Epub 2016 Jul 25. Erratum in: Oncogene. 2017 Jun 26;:.

20.

Aberrant DNA methylation of WNT pathway genes in the development and progression of CIMP-negative colorectal cancer.

Galamb O, Kalmár A, Péterfia B, Csabai I, Bodor A, Ribli D, Krenács T, Patai ÁV, Wichmann B, Barták BK, Tóth K, Valcz G, Spisák S, Tulassay Z, Molnár B.

Epigenetics. 2016 Aug 2;11(8):588-602. doi: 10.1080/15592294.2016.1190894. Epub 2016 May 31.

21.

A comprehensive survey of the mutagenic impact of common cancer cytotoxics.

Szikriszt B, Póti Á, Pipek O, Krzystanek M, Kanu N, Molnár J, Ribli D, Szeltner Z, Tusnády GE, Csabai I, Szallasi Z, Swanton C, Szüts D.

Genome Biol. 2016 May 9;17:99. doi: 10.1186/s13059-016-0963-7.

22.

A novel genomic alteration of LSAMP associates with aggressive prostate cancer in African American men.

Petrovics G, Li H, Stümpel T, Tan SH, Young D, Katta S, Li Q, Ying K, Klocke B, Ravindranath L, Kohaar I, Chen Y, Ribli D, Grote K, Zou H, Cheng J, Dalgard CL, Zhang S, Csabai I, Kagan J, Takeda D, Loda M, Srivastava S, Scherf M, Seifert M, Gaiser T, McLeod DG, Szallasi Z, Ebner R, Werner T, Sesterhenn IA, Freedman M, Dobi A, Srivastava S.

EBioMedicine. 2015 Oct 31;2(12):1957-64. doi: 10.1016/j.ebiom.2015.10.028. eCollection 2015 Dec.

23.

CAUSEL: an epigenome- and genome-editing pipeline for establishing function of noncoding GWAS variants.

Spisák S, Lawrenson K, Fu Y, Csabai I, Cottman RT, Seo JH, Haiman C, Han Y, Lenci R, Li Q, Tisza V, Szállási Z, Herbert ZT, Chabot M, Pomerantz M, Solymosi N; GAME-ON/ELLIPSE Consortium, Gayther SA, Joung JK, Freedman ML.

Nat Med. 2015 Nov;21(11):1357-63. doi: 10.1038/nm.3975. Epub 2015 Sep 23.

24.

Lost in the city: revisiting Milgram's experiment in the age of social networks.

Szüle J, Kondor D, Dobos L, Csabai I, Vattay G.

PLoS One. 2014 Nov 10;9(11):e111973. doi: 10.1371/journal.pone.0111973. eCollection 2014.

25.

The genome of the chicken DT40 bursal lymphoma cell line.

Molnár J, Póti Á, Pipek O, Krzystanek M, Kanu N, Swanton C, Tusnády GE, Szallasi Z, Csabai I, Szüts D.

G3 (Bethesda). 2014 Sep 15;4(11):2231-40. doi: 10.1534/g3.114.013482.

26.

Do the rich get richer? An empirical analysis of the Bitcoin transaction network.

Kondor D, Pósfai M, Csabai I, Vattay G.

PLoS One. 2014 Feb 5;9(2):e86197. doi: 10.1371/journal.pone.0086197. eCollection 2014. Erratum in: PLoS One. 2014;9(5):e97205.

27.

Complete genes may pass from food to human blood.

Spisák S, Solymosi N, Ittzés P, Bodor A, Kondor D, Vattay G, Barták BK, Sipos F, Galamb O, Tulassay Z, Szállási Z, Rasmussen S, Sicheritz-Ponten T, Brunak S, Molnár B, Csabai I.

PLoS One. 2013 Jul 30;8(7):e69805. doi: 10.1371/journal.pone.0069805. Print 2013.

28.

Genome-wide screening of genes regulated by DNA methylation in colon cancer development.

Spisák S, Kalmár A, Galamb O, Wichmann B, Sipos F, Péterfia B, Csabai I, Kovalszky I, Semsey S, Tulassay Z, Molnár B.

PLoS One. 2012;7(10):e46215. doi: 10.1371/journal.pone.0046215. Epub 2012 Oct 1.

29.

rCUR: an R package for CUR matrix decomposition.

Bodor A, Csabai I, Mahoney MW, Solymosi N.

BMC Bioinformatics. 2012 May 17;13:103. doi: 10.1186/1471-2105-13-103.

30.

Comment on "A bacterium that can grow by using arsenic instead of phosphorus".

Csabai I, Szathmáry E.

Science. 2011 Jun 3;332(6034):1149; author reply 1149. doi: 10.1126/science.1201399. Epub 2011 May 27.

31.

Inferring the background traffic arrival process in the Internet.

Hága P, Csabai I, Vattay G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Dec;80(6 Pt 2):066103. Epub 2009 Dec 3.

PMID:
20365227
32.

Sonoluminescence and phase diagrams of single bubbles at low dissolved air concentrations.

Simon G, Csabai I, Horváth A, Szalai F.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Feb;63(2 Pt 2):026301. Epub 2001 Jan 10.

PMID:
11308571
33.

The Missing Link: Early Methane ("T") Dwarfs in the Sloan Digital Sky Survey.

Leggett SK, Geballe TR, Fan X, Schneider DP, Gunn JE, Lupton RH, Knapp GR, Strauss MA, McDaniel A, Golimowski DA, Henry TJ, Peng E, Tsvetanov ZI, Uomoto A, Zheng W, Hill GJ, Ramsey LW, Anderson SF, Annis JA, Bahcall NA, Brinkmann J, Chen B, Csabai I I, Fukugita M, Hennessy GS, Hindsley RB, Ivezic Z, Lamb DQ, Munn JA, Pier JR, Schlegel DJ, Smith JA, Stoughton C, Thakar AR, York DG.

Astrophys J. 2000 Jun 10;536(1):L35-L38.

PMID:
10849414
34.

The Discovery of a Second Field Methane Brown Dwarf from Sloan Digital Sky Survey Commissioning Data.

Tsvetanov ZI, Golimowski DA, Zheng W, Geballe TR, Leggett SK, Ford HC, Davidsen AF, Uomoto A, Fan X, Knapp GR, Strauss MA, Brinkmann J, Lamb DQ, Newberg HJ, Rechenmacher R, Schneider DP, York DG, Lupton RH, Pier JR, Annis J, Csabai I I, Hindsley RB, Ivesic Z, Munn JA, Thakar AR, Waddell P.

Astrophys J. 2000 Mar 1;531(1):L61-L65.

PMID:
10673415
35.

The Discovery of a High-Redshift Quasar without Emission Lines from Sloan Digital Sky Survey Commissioning Data.

Fan X, Strauss MA, Gunn JE, Lupton RH, Carilli CL, Rupen MP, Schmidt GD, Moustakas LA, Davis M, Annis J, Bahcall NA, Brinkmann J, Brunner RJ, Csabai I I, Doi M, Fukugita M, Heckman TM, Hennessy GS, Hindsley RB, Ivezic Z, Knapp GR, Lamb DQ, Munn JA, Pauls AG, Pier JR, Rockosi CM, Schneider DP, Szalay AS, Tucker DL, York DG.

Astrophys J. 1999 Dec 1;526(2):L57-L60.

PMID:
10550277
36.

Criticality in the one-dimensional Kohonen neural map.

Csabai I I, Geszti T, Vattay G.

Phys Rev A. 1992 Nov 15;46(10):R6181-R6184. No abstract available.

PMID:
9908008
37.

Quark- and gluon-jet separation using neural networks.

Csabai I I, Czakó F, Fodor Z.

Phys Rev D Part Fields. 1991 Oct 1;44(7):R1905-R1908. No abstract available.

PMID:
10014104
38.

Improving signal peptide prediction accuracy by simulated neural network.

Ladunga I, Czakó F, Csabai I, Geszti T.

Comput Appl Biosci. 1991 Oct;7(4):485-7.

PMID:
1747780

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