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Items: 1 to 50 of 95

1.

IL-17 integrates multiple self-reinforcing, feed-forward mechanisms through the RNA binding protein Arid5a.

Amatya N, Childs EE, Cruz JA, Aggor FEY, Garg AV, Berman AJ, Gudjonsson JE, Atasoy U, Gaffen SL.

Sci Signal. 2018 Oct 9;11(551). pii: eaat4617. doi: 10.1126/scisignal.aat4617.

PMID:
30301788
2.

Assessment of a new kind of surgical simulator. The physical surgical simulator.

Cruz JASD, Miranda AF, Costa LED, Azevedo RU, Reis STD, Srougi M, Passerotti CC.

Acta Cir Bras. 2018 Jan;33(1):86-94. doi: 10.1590/s0102-865020180010000009.

3.

nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data.

Schober D, Jacob D, Wilson M, Cruz JA, Marcu A, Grant JR, Moing A, Deborde C, de Figueiredo LF, Haug K, Rocca-Serra P, Easton J, Ebbels TMD, Hao J, Ludwig C, Günther UL, Rosato A, Klein MS, Lewis IA, Luchinat C, Jones AR, Grauslys A, Larralde M, Yokochi M, Kobayashi N, Porzel A, Griffin JL, Viant MR, Wishart DS, Steinbeck C, Salek RM, Neumann S.

Anal Chem. 2018 Jan 2;90(1):649-656. doi: 10.1021/acs.analchem.7b02795. Epub 2017 Dec 14.

4.

The Role of Light-Dark Regulation of the Chloroplast ATP Synthase.

Kohzuma K, Froehlich JE, Davis GA, Temple JA, Minhas D, Dhingra A, Cruz JA, Kramer DM.

Front Plant Sci. 2017 Jul 24;8:1248. doi: 10.3389/fpls.2017.01248. eCollection 2017.

5.
6.

Megapixel multi-elemental imaging by Laser-Induced Breakdown Spectroscopy, a technology with considerable potential for paleoclimate studies.

Cáceres JO, Pelascini F, Motto-Ros V, Moncayo S, Trichard F, Panczer G, Marín-Roldán A, Cruz JA, Coronado I, Martín-Chivelet J.

Sci Rep. 2017 Jul 11;7(1):5080. doi: 10.1038/s41598-017-05437-3.

7.

Variations in chloroplast movement and chlorophyll fluorescence among chloroplast division mutants under light stress.

Dutta S, Cruz JA, Imran SM, Chen J, Kramer DM, Osteryoung KW.

J Exp Bot. 2017 Jun 15;68(13):3541-3555. doi: 10.1093/jxb/erx203.

8.

Chloroplast ATP Synthase Modulation of the Thylakoid Proton Motive Force: Implications for Photosystem I and Photosystem II Photoprotection.

Kanazawa A, Ostendorf E, Kohzuma K, Hoh D, Strand DD, Sato-Cruz M, Savage L, Cruz JA, Fisher N, Froehlich JE, Kramer DM.

Front Plant Sci. 2017 May 3;8:719. doi: 10.3389/fpls.2017.00719. eCollection 2017.

9.

PhenoCurve: capturing dynamic phenotype-environment relationships using phenomics data.

Yang Y, Xu L, Feng Z, Cruz JA, Savage LJ, Kramer DM, Chen J.

Bioinformatics. 2017 May 1;33(9):1370-1378. doi: 10.1093/bioinformatics/btw673.

PMID:
28453685
10.

Is Age an Independent Factor for Prostate Cancer? A Paired Analysis.

da Cruz JAS, Passerotti CC, Dos Reis ST, Guariero MES, de Campos OD, Leite KRM, Srougi M.

Curr Urol. 2017 Jan;9(4):183-187. doi: 10.1159/000447138. Epub 2016 Dec 26.

11.

Polysaccharide-Based Materials Associated with or Coordinated to Gold Nanoparticles: Synthesis and Medical Application.

Facchi DP, da Cruz JA, Bonafé EG, Pereira AGB, Fajardo AR, Venter SAS, Monteiro JP, Muniz EC, Martins AF.

Curr Med Chem. 2017;24(25):2701-2735. doi: 10.2174/0929867324666170309123351. Review.

PMID:
28294043
12.

Defects in the Expression of Chloroplast Proteins Leads to H2O2 Accumulation and Activation of Cyclic Electron Flow around Photosystem I.

Strand DD, Livingston AK, Satoh-Cruz M, Koepke T, Enlow HM, Fisher N, Froehlich JE, Cruz JA, Minhas D, Hixson KK, Kohzuma K, Lipton M, Dhingra A, Kramer DM.

Front Plant Sci. 2017 Jan 13;7:2073. doi: 10.3389/fpls.2016.02073. eCollection 2016.

13.

CCAAT/Enhancer-binding protein β promotes pathogenesis of EAE.

Simpson-Abelson MR, Hernandez-Mir G, Childs EE, Cruz JA, Poholek AC, Chattopadhyay A, Gaffen SL, McGeachy MJ.

Cytokine. 2017 Apr;92:24-32. doi: 10.1016/j.cyto.2017.01.005. Epub 2017 Jan 12.

14.

IL-17 Receptor Signaling in Oral Epithelial Cells Is Critical for Protection against Oropharyngeal Candidiasis.

Conti HR, Bruno VM, Childs EE, Daugherty S, Hunter JP, Mengesha BG, Saevig DL, Hendricks MR, Coleman BM, Brane L, Solis N, Cruz JA, Verma AH, Garg AV, Hise AG, Richardson JP, Naglik JR, Filler SG, Kolls JK, Sinha S, Gaffen SL.

Cell Host Microbe. 2016 Nov 9;20(5):606-617. doi: 10.1016/j.chom.2016.10.001. Epub 2016 Oct 27.

15.

The Effectiveness of a Systematic Algorithm for the Management of Vascular Injuries during the Laparoscopic Surgery.

Passerotti CC, Cruz JA, Reis ST, Okano MT, Duarte RJ, Srougi M, Nguyen HT.

Curr Urol. 2016 Oct;9(3):138-142. Epub 2016 Sep 20.

16.

Quality of life in young adult patients treated for bladder exstrophy.

da Cruz JA, de Mattos B, Srougi M, Nguyen H, Bonan R, Denes F, Giron A, Passerotti C.

Cent European J Urol. 2016;69(2):221-4. doi: 10.5173/ceju.2016.715. Epub 2016 Mar 24.

17.

Dynamic Environmental Photosynthetic Imaging Reveals Emergent Phenotypes.

Cruz JA, Savage LJ, Zegarac R, Hall CC, Satoh-Cruz M, Davis GA, Kovac WK, Chen J, Kramer DM.

Cell Syst. 2016 Jun 22;2(6):365-77. doi: 10.1016/j.cels.2016.06.001.

18.

Multi-level regulation of the chloroplast ATP synthase: the chloroplast NADPH thioredoxin reductase C (NTRC) is required for redox modulation specifically under low irradiance.

Carrillo LR, Froehlich JE, Cruz JA, Savage LJ, Kramer DM.

Plant J. 2016 Sep;87(6):654-63. doi: 10.1111/tpj.13226. Epub 2016 Aug 6.

19.

Does Warm-Up Training in a Virtual Reality Simulator Improve Surgical Performance? A Prospective Randomized Analysis.

da Cruz JAS, Dos Reis ST, Cunha Frati RM, Duarte RJ, Nguyen H, Srougi M, Passerotti CC.

J Surg Educ. 2016 Nov - Dec;73(6):974-978. doi: 10.1016/j.jsurg.2016.04.020. Epub 2016 May 24.

PMID:
27233673
20.

Sex-, stress-, and sympathetic post-ganglionic-dependent changes in identity and proportions of immune cells in the dura.

McIlvried LA, Cruz JA, Borghesi LA, Gold MS.

Cephalalgia. 2017 Jan;37(1):36-48. doi: 10.1177/0333102416637832. Epub 2016 Jul 11.

21.

Inter-functional analysis of high-throughput phenotype data by non-parametric clustering and its application to photosynthesis.

Gao Q, Ostendorf E, Cruz JA, Jin R, Kramer DM, Chen J.

Bioinformatics. 2016 Jan 1;32(1):67-76. doi: 10.1093/bioinformatics/btv515. Epub 2015 Sep 3.

PMID:
26342101
23.

MCPIP1 Endoribonuclease Activity Negatively Regulates Interleukin-17-Mediated Signaling and Inflammation.

Garg AV, Amatya N, Chen K, Cruz JA, Grover P, Whibley N, Conti HR, Hernandez Mir G, Sirakova T, Childs EC, Smithgall TE, Biswas PS, Kolls JK, McGeachy MJ, Kolattukudy PE, Gaffen SL.

Immunity. 2015 Sep 15;43(3):475-87. doi: 10.1016/j.immuni.2015.07.021. Epub 2015 Aug 25.

24.

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.

Miao Z, Adamiak RW, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cheng C, Chojnowski G, Chou FC, Cordero P, Cruz JA, Ferré-D'Amaré AR, Das R, Ding F, Dokholyan NV, Dunin-Horkawicz S, Kladwang W, Krokhotin A, Lach G, Magnus M, Major F, Mann TH, Masquida B, Matelska D, Meyer M, Peselis A, Popenda M, Purzycka KJ, Serganov A, Stasiewicz J, Szachniuk M, Tandon A, Tian S, Wang J, Xiao Y, Xu X, Zhang J, Zhao P, Zok T, Westhof E.

RNA. 2015 Jun;21(6):1066-84. doi: 10.1261/rna.049502.114. Epub 2015 Apr 16.

25.

Plant photosynthesis phenomics data quality control.

Xu L, Cruz JA, Savage LJ, Kramer DM, Chen J.

Bioinformatics. 2015 Jun 1;31(11):1796-804. doi: 10.1093/bioinformatics/btu854. Epub 2015 Jan 22.

PMID:
25617414
26.

Detection of Toxoplasma gondii DNA in fresh and frozen semen from rams in Brazil.

Bezerra MJ, Cruz JA, Kung ES, Albuquerque PP, Kim PC, Moraes EP, Pinheiro Júnior JW, Mota RA.

Reprod Domest Anim. 2014 Oct;49(5):753-5. doi: 10.1111/rda.12361. Epub 2014 Aug 11.

PMID:
25130195
27.

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.

Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.

28.

Temporal Dynamics of Growth and Photosynthesis Suppression in Response to Jasmonate Signaling.

Attaran E, Major IT, Cruz JA, Rosa BA, Koo AJ, Chen J, Kramer DM, He SY, Howe GA.

Plant Physiol. 2014 Jul;165(3):1302-1314. Epub 2014 May 12.

29.

Functional approach to high-throughput plant growth analysis.

Tessmer OL, Jiao Y, Cruz JA, Kramer DM, Chen J.

BMC Syst Biol. 2013;7 Suppl 6:S17. doi: 10.1186/1752-0509-7-S6-S17. Epub 2013 Dec 13.

30.

Effect of dopamine D1 and D2 receptor antagonism in the lateral hypothalamus on the expression and acquisition of fructose-conditioned flavor preference in rats.

Amador NJ, Rotella FM, Bernal SY, Malkusz D, Cruz JA, Badalia A, Duenas SM, Hossain M, Gerges M, Kandov S, Touzani K, Sclafani A, Bodnar RJ.

Brain Res. 2014 Jan 13;1542:70-8. doi: 10.1016/j.brainres.2013.10.030. Epub 2013 Nov 6.

31.

Lymph node distribution in the central compartment of the neck: an anatomic study.

Tavares MR, Cruz JA, Waisberg DR, Toledo SP, Takeda FR, Cernea CR, Capelozzi VL, Brandão LG.

Head Neck. 2014 Oct;36(10):1425-30. doi: 10.1002/hed.23469. Epub 2014 Jan 16.

PMID:
24038585
32.

Superoxide dismutase activity in portal vein endothelium after partial liver resection.

Sayão Filho RH, Perini MV, Cruz JA, Requena J, Barbeiro HV, Molan NT, Lopasso FP, D'Albuquerque LA, Cecconello I.

Acta Cir Bras. 2013 Sep;28(9):646-51.

33.

Can the learning of laparoscopic skills be quantified by the measurements of skill parameters performed in a virtual reality simulator?

Sandy NS, Cruz JA, Passerotti CC, Nguyen H, Reis ST, Gouveia EM, Duarte RJ, Bruschini H, Srougi M.

Int Braz J Urol. 2013 May-Jun;39(3):371-6. doi: 10.1590/S1677-5538.IBJU.2013.03.10.

34.

Computational 3D model of in-vitro cell stimulated by electric and magnetic fields.

Moncada ME, Escobar A, de la Cruz JA.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:5662-5. doi: 10.1109/EMBC.2012.6347279.

PMID:
23367214
35.

Fluorouracil, leucovorin, and irinotecan plus either sunitinib or placebo in metastatic colorectal cancer: a randomized, phase III trial.

Carrato A, Swieboda-Sadlej A, Staszewska-Skurczynska M, Lim R, Roman L, Shparyk Y, Bondarenko I, Jonker DJ, Sun Y, De la Cruz JA, Williams JA, Korytowsky B, Christensen JG, Lin X, Tursi JM, Lechuga MJ, Van Cutsem E.

J Clin Oncol. 2013 Apr 1;31(10):1341-7. doi: 10.1200/JCO.2012.45.1930. Epub 2013 Jan 28.

PMID:
23358972
36.

METAGENassist: a comprehensive web server for comparative metagenomics.

Arndt D, Xia J, Liu Y, Zhou Y, Guo AC, Cruz JA, Sinelnikov I, Budwill K, Nesbø CL, Wishart DS.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W88-95. doi: 10.1093/nar/gks497. Epub 2012 May 29.

37.

Underexpression of MMP-2 and its regulators, TIMP2, MT1-MMP and IL-8, is associated with prostate cancer.

Reis ST, Antunes AA, Pontes-Junior J, Sousa-Canavez JM, Dall'Oglio MF, Piantino CB, Cruz JA, Morais DR, Srougi M, Leite KR.

Int Braz J Urol. 2012 Mar-Apr;38(2):167-74.

38.

Chronic hypoxia induces right heart failure in caveolin-1-/- mice.

Cruz JA, Bauer EM, Rodriguez AI, Gangopadhyay A, Zeineh NS, Wang Y, Shiva S, Champion HC, Bauer PM.

Am J Physiol Heart Circ Physiol. 2012 Jun 15;302(12):H2518-27. doi: 10.1152/ajpheart.01140.2011. Epub 2012 Apr 13.

39.

Advances in hemophilia care: report of two symposia at the Hemophilia 2010 World Congress.

Dolan G, Cruz JA, Steinhagen-Thiessen E, Kessler C, Haaning J, Lemm G, Altisent C, Guerrero C, Hermans C, Riske B, Bolton-Maggs P.

Adv Ther. 2012 Apr;29 Suppl 1:1-16. doi: 10.1007/s12325-012-0010-3. Epub 2012 Mar 16.

PMID:
22467446
40.

Embryonic and larval development of Eugerres mexicanus (Perciformes: Gerreidae) in Tenosique, Tabasco, Mexico.

Hernández RE, Perera MA, Castillo A, Luna E, de la Cruz JA, Gómez LM, Valdez Zenil J.

Rev Biol Trop. 2012 Mar;60(1):369-79.

PMID:
22458231
41.

Robotic-assisted laparoscopic partial nephrectomy: initial experience in Brazil and a review of the literature.

Passerotti CC, Pessoa R, da Cruz JA, Okano MT, Antunes AA, Nesrallah AJ, Dall'oglio MF, Andrade E, Srougi M.

Int Braz J Urol. 2012 Jan-Feb;38(1):69-76.

42.

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization.

Louis VL, Despons L, Friedrich A, Martin T, Durrens P, Casarégola S, Neuvéglise C, Fairhead C, Marck C, Cruz JA, Straub ML, Kugler V, Sacerdot C, Uzunov Z, Thierry A, Weiss S, Bleykasten C, De Montigny J, Jacques N, Jung P, Lemaire M, Mallet S, Morel G, Richard GF, Sarkar A, Savel G, Schacherer J, Seret ML, Talla E, Samson G, Jubin C, Poulain J, Vacherie B, Barbe V, Pelletier E, Sherman DJ, Westhof E, Weissenbach J, Baret PV, Wincker P, Gaillardin C, Dujon B, Souciet JL.

G3 (Bethesda). 2012 Feb;2(2):299-311. doi: 10.1534/g3.111.000745. Epub 2012 Feb 1.

43.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E.

RNA. 2012 Apr;18(4):610-25. doi: 10.1261/rna.031054.111. Epub 2012 Feb 23.

44.

Evidence that putrescine modulates the higher plant photosynthetic proton circuit.

Ioannidis NE, Cruz JA, Kotzabasis K, Kramer DM.

PLoS One. 2012;7(1):e29864. doi: 10.1371/journal.pone.0029864. Epub 2012 Jan 12.

45.

Surgical performance during laparoscopic radical nephrectomy is improved with training in a porcine model.

Cruz JA, Passerotti CC, Frati RM, Reis ST, Okano MT, Gouveia EM, Biolo KD, Duarte RJ, Nguyen H, Srougi M.

J Endourol. 2012 Mar;26(3):278-82. doi: 10.1089/end.2011.0367. Epub 2012 Jan 4.

PMID:
22192116
46.

MMP-9 overexpression due to TIMP-1 and RECK underexpression is associated with prognosis in prostate cancer.

Reis ST, Pontes-Junior J, Antunes AA, de Sousa-Canavez JM, Dall'Oglio MF, Passerotti CC, Abe DK, Crippa A, da Cruz JA, Timoszczuk LM, Srougi M, Leite KR.

Int J Biol Markers. 2011 Oct-Dec;26(4):255-61. doi: 10.5301/JBM.2011.8831.

PMID:
22139647
47.

Bladder exstrophy: reconstructed female patients achieving normal pregnancy and delivering normal babies.

Giron AM, Passerotti CC, Nguyen H, Cruz JA, Srougi M.

Int Braz J Urol. 2011 Sep-Oct;37(5):605-10.

48.

Tgf-β1 expression as a biomarker of poor prognosis in prostate cancer.

Reis ST, Pontes-Júnior J, Antunes AA, Sousa-Canavez JM, Abe DK, Cruz JA, Dall'oglio MF, Crippa A, Passerotti CC, Ribeiro-Filho LA, Viana NI, Srougi M, Leite KR.

Clinics (Sao Paulo). 2011;66(7):1143-7.

49.

Identification and annotation of noncoding RNAs in Saccharomycotina.

Cruz JA, Westhof E.

C R Biol. 2011 Aug-Sep;334(8-9):671-8. doi: 10.1016/j.crvi.2011.05.016. Epub 2011 Jul 6. Review.

PMID:
21819949
50.

The effects of moderately high temperature on zeaxanthin accumulation and decay.

Zhang R, Kramer DM, Cruz JA, Struck KR, Sharkey TD.

Photosynth Res. 2011 Sep;108(2-3):171-81. doi: 10.1007/s11120-011-9672-y. Epub 2011 Jul 23.

PMID:
21785990

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