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Microbial Community Structure-Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities.

Kieft B, Li Z, Bryson S, Crump BC, Hettich R, Pan C, Mayali X, Mueller RS.

Front Microbiol. 2018 Jun 14;9:1282. doi: 10.3389/fmicb.2018.01282. eCollection 2018.


Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes.

Crump BC, Wojahn JM, Tomas F, Mueller RS.

Front Microbiol. 2018 Mar 15;9:388. doi: 10.3389/fmicb.2018.00388. eCollection 2018.


Assessment of Fecal Indicator Bacteria and Potential Pathogen Co-Occurrence at a Shellfish Growing Area.

Leight AK, Crump BC, Hood RR.

Front Microbiol. 2018 Mar 14;9:384. doi: 10.3389/fmicb.2018.00384. eCollection 2018.


Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery.

Gradoville MR, Crump BC, Häse CC, White AE.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02156-17. doi: 10.1128/AEM.02156-17. Print 2018 May 1.


Ocean biogeochemistry modeled with emergent trait-based genomics.

Coles VJ, Stukel MR, Brooks MT, Burd A, Crump BC, Moran MA, Paul JH, Satinsky BM, Yager PL, Zielinski BL, Hood RR.

Science. 2017 Dec 1;358(6367):1149-1154. doi: 10.1126/science.aan5712.


Photochemical alteration of organic carbon draining permafrost soils shifts microbial metabolic pathways and stimulates respiration.

Ward CP, Nalven SG, Crump BC, Kling GW, Cory RM.

Nat Commun. 2017 Oct 3;8(1):772. doi: 10.1038/s41467-017-00759-2.


Corrigendum: Microbiome of Trichodesmium Colonies from the North Pacific Subtropical Gyre.

Gradoville MR, Crump BC, Letelier RM, Church MJ, White AE.

Front Microbiol. 2017 Sep 19;8:1780. doi: 10.3389/fmicb.2017.01780. eCollection 2017.


Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition.

Hosen JD, Febria CM, Crump BC, Palmer MA.

Front Microbiol. 2017 Aug 2;8:1452. doi: 10.3389/fmicb.2017.01452. eCollection 2017.


Factors affecting the bacterial community composition and heterotrophic production of Columbia River estuarine turbidity maxima.

Herfort L, Crump BC, Fortunato CS, McCue LA, Campbell V, Simon HM, Baptista AM, Zuber P.

Microbiologyopen. 2017 Dec;6(6). doi: 10.1002/mbo3.522. Epub 2017 Aug 6.


Microbiome of Trichodesmium Colonies from the North Pacific Subtropical Gyre.

Gradoville MR, Crump BC, Letelier RM, Church MJ, White AE.

Front Microbiol. 2017 Jul 6;8:1122. doi: 10.3389/fmicb.2017.01122. eCollection 2017. Erratum in: Front Microbiol. 2017 Sep 19;8:1780.


Bacterial Biogeography across the Amazon River-Ocean Continuum.

Doherty M, Yager PL, Moran MA, Coles VJ, Fortunato CS, Krusche AV, Medeiros PM, Payet JP, Richey JE, Satinsky BM, Sawakuchi HO, Ward ND, Crump BC.

Front Microbiol. 2017 May 23;8:882. doi: 10.3389/fmicb.2017.00882. eCollection 2017.


Expression patterns of elemental cycling genes in the Amazon River Plume.

Satinsky BM, Smith CB, Sharma S, Landa M, Medeiros PM, Coles VJ, Yager PL, Crump BC, Moran MA.

ISME J. 2017 Aug;11(8):1852-1864. doi: 10.1038/ismej.2017.46. Epub 2017 Apr 7.


Microbial players and processes involved in phytoplankton bloom utilization in the water column of a fast-flowing, river-dominated estuary.

Smith MW, Herfort L, Fortunato CS, Crump BC, Simon HM.

Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.467. Epub 2017 Mar 20.


Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume.

Zielinski BL, Allen AE, Carpenter EJ, Coles VJ, Crump BC, Doherty M, Foster RA, Goes JI, Gomes HR, Hood RR, McCrow JP, Montoya JP, Moustafa A, Satinsky BM, Sharma S, Smith CB, Yager PL, Paul JH.

PLoS One. 2016 Sep 6;11(9):e0160929. doi: 10.1371/journal.pone.0160929. eCollection 2016.


Deciphering ocean carbon in a changing world.

Moran MA, Kujawinski EB, Stubbins A, Fatland R, Aluwihare LI, Buchan A, Crump BC, Dorrestein PC, Dyhrman ST, Hess NJ, Howe B, Longnecker K, Medeiros PM, Niggemann J, Obernosterer I, Repeta DJ, Waldbauer JR.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3143-51. doi: 10.1073/pnas.1514645113. Epub 2016 Mar 7.


Microbial Gene Abundance and Expression Patterns across a River to Ocean Salinity Gradient.

Fortunato CS, Crump BC.

PLoS One. 2015 Nov 4;10(11):e0140578. doi: 10.1371/journal.pone.0140578. eCollection 2015.


Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011.

Satinsky BM, Fortunato CS, Doherty M, Smith CB, Sharma S, Ward ND, Krusche AV, Yager PL, Richey JE, Moran MA, Crump BC.

Microbiome. 2015 Sep 10;3:39. doi: 10.1186/s40168-015-0099-0.


Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison.

Febria CM, Hosen JD, Crump BC, Palmer MA, Williams DD.

Front Microbiol. 2015 Jun 4;6:522. doi: 10.3389/fmicb.2015.00522. eCollection 2015.


Isolating the effects of storm events on arctic aquatic bacteria: temperature, nutrients, and community composition as controls on bacterial productivity.

Adams HE, Crump BC, Kling GW.

Front Microbiol. 2015 Mar 31;6:250. doi: 10.3389/fmicb.2015.00250. eCollection 2015.


Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary.

Eggleston EM, Lee DY, Owens MS, Cornwell JC, Crump BC, Hewson I.

Environ Microbiol. 2015 Jul;17(7):2306-18. doi: 10.1111/1462-2920.12690. Epub 2015 Feb 3.


Recreational swimmers' exposure to Vibrio vulnificus and Vibrio parahaemolyticus in the Chesapeake Bay, Maryland, USA.

Shaw KS, Sapkota AR, Jacobs JM, He X, Crump BC.

Environ Int. 2015 Jan;74:99-105. doi: 10.1016/j.envint.2014.09.016. Epub 2014 Oct 20.


Carbon cycle. Sunlight controls water column processing of carbon in arctic fresh waters.

Cory RM, Ward CP, Crump BC, Kling GW.

Science. 2014 Aug 22;345(6199):925-8. doi: 10.1126/science.1253119.


Microspatial gene expression patterns in the Amazon River Plume.

Satinsky BM, Crump BC, Smith CB, Sharma S, Zielinski BL, Doherty M, Meng J, Sun S, Medeiros PM, Paul JH, Coles VJ, Yager PL, Moran MA.

Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):11085-90. doi: 10.1073/pnas.1402782111. Epub 2014 Jul 14.


The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010.

Satinsky BM, Zielinski BL, Doherty M, Smith CB, Sharma S, Paul JH, Crump BC, Moran MA.

Microbiome. 2014 May 15;2:17. doi: 10.1186/2049-2618-2-17. eCollection 2014.


Metacommunity dynamics of bacteria in an arctic lake: the impact of species sorting and mass effects on bacterial production and biogeography.

Adams HE, Crump BC, Kling GW.

Front Microbiol. 2014 Mar 4;5:82. doi: 10.3389/fmicb.2014.00082. eCollection 2014.


Antimicrobial susceptibility of Vibrio vulnificus and Vibrio parahaemolyticus recovered from recreational and commercial areas of Chesapeake Bay and Maryland Coastal Bays.

Shaw KS, Rosenberg Goldstein RE, He X, Jacobs JM, Crump BC, Sapkota AR.

PLoS One. 2014 Feb 25;9(2):e89616. doi: 10.1371/journal.pone.0089616. eCollection 2014.


Metatranscriptomic analyses of plankton communities inhabiting surface and subpycnocline waters of the Chesapeake Bay during oxic-anoxic-oxic transitions.

Hewson I, Eggleston EM, Doherty M, Lee DY, Owens M, Shapleigh JP, Cornwell JC, Crump BC.

Appl Environ Microbiol. 2014 Jan;80(1):328-38. doi: 10.1128/AEM.02680-13. Epub 2013 Oct 25.


Use of internal standards for quantitative metatranscriptome and metagenome analysis.

Satinsky BM, Gifford SM, Crump BC, Moran MA.

Methods Enzymol. 2013;531:237-50. doi: 10.1016/B978-0-12-407863-5.00012-5.


Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin.

Fortunato CS, Eiler A, Herfort L, Needoba JA, Peterson TD, Crump BC.

ISME J. 2013 Oct;7(10):1899-911. doi: 10.1038/ismej.2013.79. Epub 2013 May 30.


Surface exposure to sunlight stimulates CO2 release from permafrost soil carbon in the Arctic.

Cory RM, Crump BC, Dobkowski JA, Kling GW.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3429-34. doi: 10.1073/pnas.1214104110. Epub 2013 Feb 11.


Microbial biogeography of arctic streams: exploring influences of lithology and habitat.

Larouche JR, Bowden WB, Giordano R, Flinn MB, Crump BC.

Front Microbiol. 2012 Aug 24;3:309. doi: 10.3389/fmicb.2012.00309. eCollection 2012.


Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils.

Crump BC, Amaral-Zettler LA, Kling GW.

ISME J. 2012 Sep;6(9):1629-39. doi: 10.1038/ismej.2012.9. Epub 2012 Mar 1.


Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient.

Fortunato CS, Herfort L, Zuber P, Baptista AM, Crump BC.

ISME J. 2012 Mar;6(3):554-63. doi: 10.1038/ismej.2011.135. Epub 2011 Oct 20.


Ecosystem engineers in the pelagic realm: alteration of habitat by species ranging from microbes to jellyfish.

Breitburg DL, Crump BC, Dabiri JO, Gallegos CL.

Integr Comp Biol. 2010 Aug;50(2):188-200. doi: 10.1093/icb/icq051. Epub 2010 Jun 16.


Bacterioplankton community variation across river to ocean environmental gradients.

Fortunato CS, Crump BC.

Microb Ecol. 2011 Aug;62(2):374-82. doi: 10.1007/s00248-011-9805-z. Epub 2011 Feb 1.


Seasonal changes in bacterial and archaeal gene expression patterns across salinity gradients in the Columbia River coastal margin.

Smith MW, Herfort L, Tyrol K, Suciu D, Campbell V, Crump BC, Peterson TD, Zuber P, Baptista AM, Simon HM.

PLoS One. 2010 Oct 13;5(10):e13312. doi: 10.1371/journal.pone.0013312.


Temperature controls on aquatic bacterial production and community dynamics in arctic lakes and streams.

Adams HE, Crump BC, Kling GW.

Environ Microbiol. 2010 May;12(5):1319-33. doi: 10.1111/j.1462-2920.2010.02176.x. Epub 2010 Feb 25.


Circumpolar synchrony in big river bacterioplankton.

Crump BC, Peterson BJ, Raymond PA, Amon RM, Rinehart A, McClelland JW, Holmes RM.

Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21208-12. doi: 10.1073/pnas.0906149106. Epub 2009 Nov 25.


Salt marsh sediment bacteria: their distribution and response to external nutrient inputs.

Bowen JL, Crump BC, Deegan LA, Hobbie JE.

ISME J. 2009 Aug;3(8):924-34. doi: 10.1038/ismej.2009.44. Epub 2009 May 7.


Attached bacterial populations shared by four species of aquatic angiosperms.

Crump BC, Koch EW.

Appl Environ Microbiol. 2008 Oct;74(19):5948-57. doi: 10.1128/AEM.00952-08. Epub 2008 Aug 1.


Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters.

Crump BC, Peranteau C, Beckingham B, Cornwell JC.

Appl Environ Microbiol. 2007 Nov;73(21):6802-10. Epub 2007 Aug 31.


Molecular characterization of sulfate-reducing bacteria in a New England salt marsh.

Bahr M, Crump BC, Klepac-Ceraj V, Teske A, Sogin ML, Hobbie JE.

Environ Microbiol. 2005 Aug;7(8):1175-85.


High overall diversity and dominance of microdiverse relationships in salt marsh sulphate-reducing bacteria.

Klepac-Ceraj V, Bahr M, Crump BC, Teske AP, Hobbie JE, Polz MF.

Environ Microbiol. 2004 Jul;6(7):686-98.


Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time.

Crump BC, Hopkinson CS, Sogin ML, Hobbie JE.

Appl Environ Microbiol. 2004 Mar;70(3):1494-505.


Rapid screening for freshwater bacterial groups by using reverse line blot hybridization.

Zwart G, van Hannen EJ, Kamst-van Agterveld MP, Van der Gucht K, Lindström ES, Van Wichelen J, Lauridsen T, Crump BC, Han SK, Declerck S.

Appl Environ Microbiol. 2003 Oct;69(10):5875-83.


Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source.

Crump BC, Kling GW, Bahr M, Hobbie JE.

Appl Environ Microbiol. 2003 Apr;69(4):2253-68.


Bacterioplankton community composition in flowing waters of the Ipswich River watershed.

Levine UY, Crump BC.

Biol Bull. 2002 Oct;203(2):251-2. No abstract available.


Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA.

Crump BC, Baross JA.

FEMS Microbiol Ecol. 2000 Mar 1;31(3):231-239.

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