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Items: 1 to 50 of 154

1.

De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing.

Dutreux F, Da Silva C, d'Agata L, Couloux A, Gay EJ, Istace B, Lapalu N, Lemainque A, Linglin J, Noel B, Wincker P, Cruaud C, Rouxel T, Balesdent MH, Aury JM.

Sci Data. 2018 Nov 6;5:180235. doi: 10.1038/sdata.2018.235.

2.

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps.

Belser C, Istace B, Denis E, Dubarry M, Baurens FC, Falentin C, Genete M, Berrabah W, Chèvre AM, Delourme R, Deniot G, Denoeud F, Duffé P, Engelen S, Lemainque A, Manzanares-Dauleux M, Martin G, Morice J, Noel B, Vekemans X, D'Hont A, Rousseau-Gueutin M, Barbe V, Cruaud C, Wincker P, Aury JM.

Nat Plants. 2018 Nov;4(11):879-887. doi: 10.1038/s41477-018-0289-4. Epub 2018 Nov 2.

PMID:
30390080
3.

De novo clustering of long reads by gene from transcriptomics data.

Marchet C, Lecompte L, Silva CD, Cruaud C, Aury JM, Nicolas J, Peterlongo P.

Nucleic Acids Res. 2018 Sep 27. doi: 10.1093/nar/gky834. [Epub ahead of print]

PMID:
30260405
4.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
5.

A Freeloader? The Highly Eroded Yet Large Genome of the Serratia symbiotica Symbiont of Cinara strobi.

Manzano-Marín A, Coeur d'acier A, Clamens AL, Orvain C, Cruaud C, Barbe V, Jousselin E.

Genome Biol Evol. 2018 Sep 1;10(9):2178-2189. doi: 10.1093/gbe/evy173.

6.

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.

Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, Sabot F, Vigouroux Y.

Curr Biol. 2018 Jul 23;28(14):2274-2282.e6. doi: 10.1016/j.cub.2018.05.066. Epub 2018 Jul 5.

PMID:
29983312
7.

Biogeography of soil bacteria and archaea across France.

Karimi B, Terrat S, Dequiedt S, Saby NPA, Horrigue W, Lelièvre M, Nowak V, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Maron PA, Bouré NCP, Ranjard L.

Sci Adv. 2018 Jul 4;4(7):eaat1808. doi: 10.1126/sciadv.aat1808. eCollection 2018 Jul.

8.

Genome evolution across 1,011 Saccharomyces cerevisiae isolates.

Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G, Schacherer J.

Nature. 2018 Apr;556(7701):339-344. doi: 10.1038/s41586-018-0030-5. Epub 2018 Apr 11.

PMID:
29643504
9.

Complete Genome Sequence of the Facultative Methylotroph Methylobacterium extorquens TK 0001 Isolated from Soil in Poland.

Belkhelfa S, Labadie K, Cruaud C, Aury JM, Roche D, Bouzon M, Salanoubat M, Döring V.

Genome Announc. 2018 Feb 22;6(8). pii: e00018-18. doi: 10.1128/genomeA.00018-18.

10.

Correction: Mapping and predictive variations of soil bacterial richness across France.

Terrat S, Horrigue W, Dequiedt S, Saby NPA, Lelièvre M, Nowak V, Tripied J, Régnier T, Jolivet C, Arrouays D, Wincker P, Cruaud C, Karimi B, Bispo A, Maron PA, Prévost-Bouré NC, Ranjard L.

PLoS One. 2017 Dec 18;12(12):e0190128. doi: 10.1371/journal.pone.0190128. eCollection 2017.

11.

Mapping and predictive variations of soil bacterial richness across France.

Terrat S, Horrigue W, Dequiedt S, Saby NPA, Lelièvre M, Nowak V, Tripied J, Régnier T, Jolivet C, Arrouays D, Wincker P, Cruaud C, Karimi B, Bispo A, Maron PA, Chemidlin Prévost-Bouré N, Ranjard L.

PLoS One. 2017 Oct 23;12(10):e0186766. doi: 10.1371/journal.pone.0186766. eCollection 2017. Erratum in: PLoS One. 2017 Dec 18;12 (12 ):e0190128.

12.

High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing.

Fournier T, Gounot JS, Freel K, Cruaud C, Lemainque A, Aury JM, Wincker P, Schacherer J, Friedrich A.

G3 (Bethesda). 2017 Oct 5;7(10):3243-3250. doi: 10.1534/g3.117.300128.

13.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.

Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M; Genoscope Technical Team, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernández-Gómez B, Bowler C, Cochrane G, Amid C, Hoopen PT, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL; Tara Oceans Consortium Coordinators, Pesant S, Karsenti E, Wincker P.

Sci Data. 2017 Aug 1;4:170093. doi: 10.1038/sdata.2017.93.

14.

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, Aury JM.

Gigascience. 2017 Feb 1;6(2):1-13. doi: 10.1093/gigascience/giw018.

15.

Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions.

Meyer M, Bourras S, Gervais J, Labadie K, Cruaud C, Balesdent MH, Rouxel T.

Fungal Genet Biol. 2017 Feb;99:1-12. doi: 10.1016/j.fgb.2016.12.008. Epub 2016 Dec 26.

PMID:
28034799
16.

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses.

Roux S, Brum JR, Dutilh BE, Sunagawa S, Duhaime MB, Loy A, Poulos BT, Solonenko N, Lara E, Poulain J, Pesant S, Kandels-Lewis S, Dimier C, Picheral M, Searson S, Cruaud C, Alberti A, Duarte CM, Gasol JM, Vaqué D; Tara Oceans Coordinators, Bork P, Acinas SG, Wincker P, Sullivan MB.

Nature. 2016 Sep 29;537(7622):689-693. doi: 10.1038/nature19366. Epub 2016 Sep 21.

17.

Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape.

Gervais J, Plissonneau C, Linglin J, Meyer M, Labadie K, Cruaud C, Fudal I, Rouxel T, Balesdent MH.

Mol Plant Pathol. 2017 Oct;18(8):1113-1126. doi: 10.1111/mpp.12464. Epub 2016 Aug 25.

PMID:
27474899
18.

Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae).

Roquet C, Coissac É, Cruaud C, Boleda M, Boyer F, Alberti A, Gielly L, Taberlet P, Thuiller W, Van Es J, Lavergne S.

Ann Bot. 2016 Jul 21. pii: mcw135. [Epub ahead of print]

19.

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species.

Alves-Carvalho S, Aubert G, Carrère S, Cruaud C, Brochot AL, Jacquin F, Klein A, Martin C, Boucherot K, Kreplak J, da Silva C, Moreau S, Gamas P, Wincker P, Gouzy J, Burstin J.

Plant J. 2015 Oct;84(1):1-19. doi: 10.1111/tpj.12967.

20.

Ocean plankton. Patterns and ecological drivers of ocean viral communities.

Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, de Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB.

Science. 2015 May 22;348(6237):1261498. doi: 10.1126/science.1261498. Erratum in: Science. 2016 Aug 12;353(6300). pii: aah6502. doi: 10.1126/science.aah6502.

21.

Ocean plankton. Structure and function of the global ocean microbiome.

Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans coordinators, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P.

Science. 2015 May 22;348(6237):1261359. doi: 10.1126/science.1261359.

22.

Improving biodiversity assessment of anuran amphibians using DNA barcoding of tadpoles. Case studies from Southeast Asia.

Grosjean S, Ohler A, Chuaynkern Y, Cruaud C, Hassanin A.

C R Biol. 2015 May;338(5):351-61. doi: 10.1016/j.crvi.2015.03.015. Epub 2015 Apr 30. Erratum in: C R Biol. 2015 Oct;338(10):708.

PMID:
25936275
23.

Genome assembly using Nanopore-guided long and error-free DNA reads.

Madoui MA, Engelen S, Cruaud C, Belser C, Bertrand L, Alberti A, Lemainque A, Wincker P, Aury JM.

BMC Genomics. 2015 Apr 20;16:327. doi: 10.1186/s12864-015-1519-z.

24.

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data.

Alberti A, Belser C, Engelen S, Bertrand L, Orvain C, Brinas L, Cruaud C, Giraut L, Da Silva C, Firmo C, Aury JM, Wincker P.

BMC Genomics. 2014 Oct 20;15:912. doi: 10.1186/1471-2164-15-912.

25.

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens.

Grandaubert J, Lowe RG, Soyer JL, Schoch CL, Van de Wouw AP, Fudal I, Robbertse B, Lapalu N, Links MG, Ollivier B, Linglin J, Barbe V, Mangenot S, Cruaud C, Borhan H, Howlett BJ, Balesdent MH, Rouxel T.

BMC Genomics. 2014 Oct 12;15:891. doi: 10.1186/1471-2164-15-891.

26.

Improving soil bacterial taxa-area relationships assessment using DNA meta-barcoding.

Terrat S, Dequiedt S, Horrigue W, Lelievre M, Cruaud C, Saby NP, Jolivet C, Arrouays D, Maron PA, Ranjard L, Chemidlin Prévost-Bouré N.

Heredity (Edinb). 2015 May;114(5):468-75. doi: 10.1038/hdy.2014.91. Epub 2014 Oct 8.

27.

Complete genome sequence of invertebrate iridovirus IIV22A, a variant of IIV22, isolated originally from a blackfly larva.

Piégu B, Guizard S, Yeping T, Cruaud C, Couloux A, Bideshi DK, Federici BA, Bigot Y.

Stand Genomic Sci. 2014 Apr 20;9(3):940-7. doi: 10.4056/sigs.5059132. eCollection 2014 Jun 15.

28.

Characterization of novel polycyclic aromatic hydrocarbon dioxygenases from the bacterial metagenomic DNA of a contaminated soil.

Chemerys A, Pelletier E, Cruaud C, Martin F, Violet F, Jouanneau Y.

Appl Environ Microbiol. 2014 Nov;80(21):6591-600. doi: 10.1128/AEM.01883-14. Epub 2014 Aug 15.

29.

A phylogenetic re-analysis of groupers with applications for ciguatera fish poisoning.

Schoelinck C, Hinsinger DD, Dettaï A, Cruaud C, Justine JL.

PLoS One. 2014 Aug 5;9(8):e98198. doi: 10.1371/journal.pone.0098198. eCollection 2014.

30.

Insights on the evolution of plant succulence from a remarkable radiation in Madagascar (Euphorbia).

Evans M, Aubriot X, Hearn D, Lanciaux M, Lavergne S, Cruaud C, Lowry PP 2nd, Haevermans T.

Syst Biol. 2014 Sep;63(5):697-711. doi: 10.1093/sysbio/syu035. Epub 2014 May 22.

PMID:
24852061
31.

Genome sequence of a crustacean iridovirus, IIV31, isolated from the pill bug, Armadillidium vulgare.

Piégu B, Guizard S, Yeping T, Cruaud C, Asgari S, Bideshi DK, Federici BA, Bigot Y.

J Gen Virol. 2014 Jul;95(Pt 7):1585-90. doi: 10.1099/vir.0.066076-0. Epub 2014 Apr 10.

PMID:
24722681
32.

Fifty thousand years of Arctic vegetation and megafaunal diet.

Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sønstebø JH, Murton J, Sher A, Rasmussen M, Rønn R, Mourier T, Cooper A, Austin J, Möller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RD, Gilbert MT, Kjær KH, Orlando L, Brochmann C, Taberlet P.

Nature. 2014 Feb 6;506(7486):47-51. doi: 10.1038/nature12921.

PMID:
24499916
33.

Complete genome sequence of invertebrate iridovirus IIV30 isolated from the corn earworm, Helicoverpa zea.

Piégu B, Guizard S, Spears T, Cruaud C, Couloux A, Bideshi DK, Federici BA, Bigot Y.

J Invertebr Pathol. 2014 Feb;116:43-7. doi: 10.1016/j.jip.2013.12.007. Epub 2014 Jan 3.

PMID:
24394746
34.

The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae).

Thubaut J, Puillandre N, Faure B, Cruaud C, Samadi S.

Ecol Evol. 2013 Nov;3(14):4748-66. doi: 10.1002/ece3.749. Epub 2013 Oct 31.

35.

The phylogeny and biogeographic history of ashes (fraxinus, oleaceae) highlight the roles of migration and vicariance in the diversification of temperate trees.

Hinsinger DD, Basak J, Gaudeul M, Cruaud C, Bertolino P, Frascaria-Lacoste N, Bousquet J.

PLoS One. 2013 Nov 21;8(11):e80431. doi: 10.1371/journal.pone.0080431. eCollection 2013.

36.

Complete genome sequence of invertebrate iridovirus IIV-25 isolated from a blackfly larva.

Piégu B, Guizard S, Spears T, Cruaud C, Couloux A, Bideshi DK, Federici BA, Bigot Y.

Arch Virol. 2014 May;159(5):1181-5.

PMID:
24232916
37.

Is the species flock concept operational? The Antarctic shelf case.

Lecointre G, Améziane N, Boisselier MC, Bonillo C, Busson F, Causse R, Chenuil A, Couloux A, Coutanceau JP, Cruaud C, d'Acoz Cd, De Ridder C, Denys G, Dettaï A, Duhamel G, Eléaume M, Féral JP, Gallut C, Havermans C, Held C, Hemery L, Lautrédou AC, Martin P, Ozouf-Costaz C, Pierrat B, Pruvost P, Puillandre N, Samadi S, Saucède T, Schubart C, David B.

PLoS One. 2013 Aug 2;8(8):e68787. doi: 10.1371/journal.pone.0068787. Print 2013.

38.

Complete genome sequence of invertebrate iridescent virus 22 isolated from a blackfly larva.

Piégu B, Guizard S, Spears T, Cruaud C, Couloux A, Bideshi DK, Federici BA, Bigot Y.

J Gen Virol. 2013 Sep;94(Pt 9):2112-6. doi: 10.1099/vir.0.054213-0. Epub 2013 Jun 26.

39.

Sequencing platform and library preparation choices impact viral metagenomes.

Solonenko SA, Ignacio-Espinoza JC, Alberti A, Cruaud C, Hallam S, Konstantinidis K, Tyson G, Wincker P, Sullivan MB.

BMC Genomics. 2013 May 10;14:320. doi: 10.1186/1471-2164-14-320.

40.

Purifying selection after episodes of recurrent adaptive diversification in fungal pathogens.

Gladieux P, Devier B, Aguileta G, Cruaud C, Giraud T.

Infect Genet Evol. 2013 Jul;17:123-31. doi: 10.1016/j.meegid.2013.03.012. Epub 2013 Apr 10.

PMID:
23583792
41.

How effective are DNA barcodes in the identification of African rainforest trees?

Parmentier I, Duminil J, Kuzmina M, Philippe M, Thomas DW, Kenfack D, Chuyong GB, Cruaud C, Hardy OJ.

PLoS One. 2013;8(4):e54921. doi: 10.1371/journal.pone.0054921. Epub 2013 Apr 2.

42.

Geographic locality greatly influences fungal endophyte communities in Cephalotaxus harringtonia.

Langenfeld A, Prado S, Nay B, Cruaud C, Lacoste S, Bury E, Hachette F, Hosoya T, Dupont J.

Fungal Biol. 2013 Feb;117(2):124-36. doi: 10.1016/j.funbio.2012.12.005. Epub 2013 Jan 8.

PMID:
23452950
43.

Species Diversity, Phylogeny and Large Scale Biogeographic Patterns of the Genus Padina (Phaeophyceae, Dictyotales).

Silberfeld T, Bittner L, Fernández-García C, Cruaud C, Rousseau F, de Reviers B, Leliaert F, Payri CE, De Clerck O.

J Phycol. 2013 Feb;49(1):130-42. doi: 10.1111/jpy.12027. Epub 2013 Jan 11.

PMID:
27008395
44.

Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia.

Ségurel L, Austerlitz F, Toupance B, Gautier M, Kelley JL, Pasquet P, Lonjou C, Georges M, Voisin S, Cruaud C, Couloux A, Hegay T, Aldashev A, Vitalis R, Heyer E.

Eur J Hum Genet. 2013 Oct;21(10):1146-51. doi: 10.1038/ejhg.2012.295. Epub 2013 Jan 23.

45.

New nuclear markers and exploration of the relationships among Serraniformes (Acanthomorpha, Teleostei): the importance of working at multiple scales.

Lautredou AC, Motomura H, Gallut C, Ozouf-Costaz C, Cruaud C, Lecointre G, Dettai A.

Mol Phylogenet Evol. 2013 Apr;67(1):140-55. doi: 10.1016/j.ympev.2012.12.020. Epub 2013 Jan 7.

PMID:
23306305
46.

Non-invasive ancient DNA protocol for fluid-preserved specimens and phylogenetic systematics of the genus Orestias (Teleostei: Cyprinodontidae).

Garrigos YE, Hugueny B, Koerner K, Ibañez C, Bonillo C, Pruvost P, Causse R, Cruaud C, Gaubert P.

Zootaxa. 2013;3640:373-94.

PMID:
26000423
47.

Evolution of diadromy in fish: insights from a tropical genus (Kuhlia species).

Feutry P, Castelin M, Ovenden JR, Dettaï A, Robinet T, Cruaud C, Keith P.

Am Nat. 2013 Jan;181(1):52-63. doi: 10.1086/668593. Epub 2012 Nov 27.

PMID:
23234845
48.

DNA barcoding in a biodiversity hot spot: potential value for the identification of Malagasy Euphorbia L. listed in CITES Appendices I and II.

Aubriot X, Lowry PP 2nd, Cruaud C, Couloux A, Haevermans T.

Mol Ecol Resour. 2013 Jan;13(1):57-65. doi: 10.1111/1755-0998.12028. Epub 2012 Oct 24.

PMID:
23095939
49.

Molecular systematics and phylogeography of the tribe Myonycterini (Mammalia, Pteropodidae) inferred from mitochondrial and nuclear markers.

Nesi N, Kadjo B, Pourrut X, Leroy E, Pongombo Shongo C, Cruaud C, Hassanin A.

Mol Phylogenet Evol. 2013 Jan;66(1):126-37. doi: 10.1016/j.ympev.2012.09.028. Epub 2012 Oct 10.

PMID:
23063885
50.

Speciation patterns in gastropods with long-lived larvae from deep-sea seamounts.

Castelin M, Lorion J, Brisset J, Cruaud C, Maestrati P, Utge J, Samadi S.

Mol Ecol. 2012 Oct;21(19):4828-53. doi: 10.1111/j.1365-294X.2012.05743.x. Epub 2012 Sep 3. No abstract available.

PMID:
22943668

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