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Items: 26

1.

Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee.

Awada R, Campa C, Gibault E, Déchamp E, Georget F, Lepelley M, Abdallah C, Erban A, Martinez-Seidel F, Kopka J, Legendre L, Léran S, Conéjéro G, Verdeil JL, Crouzillat D, Breton D, Bertrand B, Etienne H.

Int J Mol Sci. 2019 Sep 20;20(19). pii: E4665. doi: 10.3390/ijms20194665.

2.

Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.

Guyeux C, Charr JC, Tran HTM, Furtado A, Henry RJ, Crouzillat D, Guyot R, Hamon P.

PLoS One. 2019 Jun 12;14(6):e0216347. doi: 10.1371/journal.pone.0216347. eCollection 2019.

3.

Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L.

Merot-L'anthoene V, Tournebize R, Darracq O, Rattina V, Lepelley M, Bellanger L, Tranchant-Dubreuil C, Coulée M, Pégard M, Metairon S, Fournier C, Stoffelen P, Janssens SB, Kiwuka C, Musoli P, Sumirat U, Legnaté H, Kambale JL, Ferreira da Costa Neto J, Revel C, de Kochko A, Descombes P, Crouzillat D, Poncet V.

Plant Biotechnol J. 2019 Jul;17(7):1418-1430. doi: 10.1111/pbi.13066. Epub 2019 Feb 4.

4.

Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions.

de Castro Nunes R, Orozco-Arias S, Crouzillat D, Mueller LA, Strickler SR, Descombes P, Fournier C, Moine D, de Kochko A, Yuyama PM, Vanzela ALL, Guyot R.

Front Plant Sci. 2018 Feb 15;9:175. doi: 10.3389/fpls.2018.00175. eCollection 2018.

5.

Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons.

Dupeyron M, de Souza RF, Hamon P, de Kochko A, Crouzillat D, Couturon E, Domingues DS, Guyot R.

Mol Genet Genomics. 2017 Aug;292(4):741-754. doi: 10.1007/s00438-017-1308-2. Epub 2017 Mar 17.

PMID:
28314936
6.

Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content.

Hamon P, Grover CE, Davis AP, Rakotomalala JJ, Raharimalala NE, Albert VA, Sreenath HL, Stoffelen P, Mitchell SE, Couturon E, Hamon S, de Kochko A, Crouzillat D, Rigoreau M, Sumirat U, Akaffou S, Guyot R.

Mol Phylogenet Evol. 2017 Apr;109:351-361. doi: 10.1016/j.ympev.2017.02.009. Epub 2017 Feb 16.

PMID:
28212875
7.

Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.

Guyot R, Darré T, Dupeyron M, de Kochko A, Hamon S, Couturon E, Crouzillat D, Rigoreau M, Rakotomalala JJ, Raharimalala NE, Akaffou SD, Hamon P.

Mol Genet Genomics. 2016 Oct;291(5):1979-90. doi: 10.1007/s00438-016-1235-7. Epub 2016 Jul 28.

PMID:
27469896
8.

New Coffee Plant-Infecting Xylella fastidiosa Variants Derived via Homologous Recombination.

Jacques MA, Denancé N, Legendre B, Morel E, Briand M, Mississipi S, Durand K, Olivier V, Portier P, Poliakoff F, Crouzillat D.

Appl Environ Microbiol. 2015 Dec 28;82(5):1556-68. doi: 10.1128/AEM.03299-15.

9.

Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families.

Dias ES, Hatt C, Hamon S, Hamon P, Rigoreau M, Crouzillat D, Carareto CM, de Kochko A, Guyot R.

Plant Mol Biol. 2015 Sep;89(1-2):83-97. doi: 10.1007/s11103-015-0352-8. Epub 2015 Aug 6.

PMID:
26245353
10.

Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species.

Roncal J, Guyot R, Hamon P, Crouzillat D, Rigoreau M, Konan ON, Rakotomalala JJ, Nowak MD, Davis AP, de Kochko A.

Mol Genet Genomics. 2016 Feb;291(1):155-68. doi: 10.1007/s00438-015-1098-3. Epub 2015 Aug 1.

PMID:
26231981
11.

Terminal-repeat retrotransposons with GAG domain in plant genomes: a new testimony on the complex world of transposable elements.

Chaparro C, Gayraud T, de Souza RF, Domingues DS, Akaffou S, Laforga Vanzela AL, Kochko Ad, Rigoreau M, Crouzillat D, Hamon S, Hamon P, Guyot R.

Genome Biol Evol. 2015 Jan 7;7(2):493-504. doi: 10.1093/gbe/evv001.

12.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.

13.

Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites.

Razafinarivo NJ, Guyot R, Davis AP, Couturon E, Hamon S, Crouzillat D, Rigoreau M, Dubreuil-Tranchant C, Poncet V, De Kochko A, Rakotomalala JJ, Hamon P.

Ann Bot. 2013 Feb;111(2):229-48. doi: 10.1093/aob/mcs283. Epub 2012 Dec 28.

14.

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.

Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A.

BMC Genomics. 2012 Mar 20;13:103. doi: 10.1186/1471-2164-13-103.

15.

Characterization, high-resolution mapping and differential expression of three homologous PAL genes in Coffea canephora Pierre (Rubiaceae).

Lepelley M, Mahesh V, McCarthy J, Rigoreau M, Crouzillat D, Chabrillange N, de Kochko A, Campa C.

Planta. 2012 Jul;236(1):313-26. doi: 10.1007/s00425-012-1613-2. Epub 2012 Feb 21.

16.

Somatic embryogenesis and vegetative cutting capacity are under distinct genetic control in Coffea canephora Pierre.

Priyono, Florin B, Rigoreau M, Ducos JP, Sumirat U, Mawardi S, Lambot C, Broun P, Pétiard V, Wahyudi T, Crouzillat D.

Plant Cell Rep. 2010 Apr;29(4):343-57. doi: 10.1007/s00299-010-0825-9. Epub 2010 Feb 10.

18.

Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.

Lin C, Mueller LA, Mc Carthy J, Crouzillat D, Pétiard V, Tanksley SD.

Theor Appl Genet. 2005 Dec;112(1):114-30. Epub 2005 Nov 5.

19.

Chemical composition and flavor of ecuadorian cocoa liquor.

Luna F, Crouzillat D, Cirou L, Bucheli P.

J Agric Food Chem. 2002 Jun 5;50(12):3527-32.

PMID:
12033823
20.

Genomics, molecular genetics and the food industry.

Pridmore RD, Crouzillat D, Walker C, Foley S, Zink R, Zwahlen MC, Brüssow H, Pétiard V, Mollet B.

J Biotechnol. 2000 Mar 31;78(3):251-8.

PMID:
10751686
21.

Theobroma cacao L.: a genetic linkage map and quantitative trait loci analysis.

Crouzillat D, Lerceteau E, Petiard V, Morera J, Rodriguez H, Walker D, Phillips W, Ronning C, Schnell R, Osei J, Fritz P.

Theor Appl Genet. 1996 Jul;93(1-2):205-14. doi: 10.1007/BF00225747.

PMID:
24162219
22.

Mitochondrial DNA RFLP and genetical studies of cytoplasmic male sterility in the sunflower (Helianthus annuus).

Crouzillat D, De La Canal L, Vear F, Serieys H, Ledoigt G.

Curr Genet. 1994 Aug;26(2):146-52.

PMID:
8001169
23.

Nucleotide sequence and transcriptional analysis of a mitochondrial plasmid from a cytoplasmic male-sterile line of sunflower.

de la Canal L, Crouzillat D, Flamand MC, Perrault A, Boutry M, Ledoigt G.

Theor Appl Genet. 1991 Jun;81(6):812-8. doi: 10.1007/BF00224995.

PMID:
24221446
24.

Cytoplasmic male sterility in sunflower: comparison of molecular biology and genetic studies.

Crouzillat D, de la Canal L, Perrault A, Ledoigt G, Vear F, Serieys H.

Plant Mol Biol. 1991 Mar;16(3):415-26.

PMID:
1680010
25.

Properties and nucleotide sequence of a mitochondrial plasmid from sunflower.

Crouzillat D, Gentzbittel L, de la Canal L, Vaury C, Perrault A, Nicolas P, Ledoigt G.

Curr Genet. 1989 Apr;15(4):283-9.

PMID:
2473847
26.

Molecular analysis of the mitochondrial genome of Helianthus annuus in relation to cytoplasmic male sterility and phylogeny.

Crouzillat D, Leroy P, Perrault A, Ledoigt G.

Theor Appl Genet. 1987 Oct;74(6):773-80. doi: 10.1007/BF00247556.

PMID:
24240339

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