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Items: 14


Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease.

Ryan FJ, Ahern AM, Fitzgerald RS, Laserna-Mendieta EJ, Power EM, Clooney AG, O'Donoghue KW, McMurdie PJ, Iwai S, Crits-Christoph A, Sheehan D, Moran C, Flemer B, Zomer AL, Fanning A, O'Callaghan J, Walton J, Temko A, Stack W, Jackson L, Joyce SA, Melgar S, DeSantis TZ, Bell JT, Shanahan F, Claesson MJ.

Nat Commun. 2020 Mar 23;11(1):1512. doi: 10.1038/s41467-020-15342-5.


Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries.

Olm MR, Crits-Christoph A, Diamond S, Lavy A, Matheus Carnevali PB, Banfield JF.

mSystems. 2020 Jan 14;5(1). pii: e00731-19. doi: 10.1128/mSystems.00731-19.


Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol.

Li Z, Yao Q, Guo X, Crits-Christoph A, Mayes MA, Hervey WJ IV, Lebeis SL, Banfield JF, Hurst GB, Hettich RL, Pan C.

Front Microbiol. 2019 Dec 6;10:2706. doi: 10.3389/fmicb.2019.02706. eCollection 2019.


Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria.

Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF.

Sci Adv. 2019 Dec 11;5(12):eaax5727. doi: 10.1126/sciadv.aax5727. eCollection 2019 Dec.


High proportions of bacteria and archaea across most biomes remain uncultured.

Steen AD, Crits-Christoph A, Carini P, DeAngelis KM, Fierer N, Lloyd KG, Cameron Thrash J.

ISME J. 2019 Dec;13(12):3126-3130. doi: 10.1038/s41396-019-0484-y. Epub 2019 Aug 6.


Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms.

Diamond S, Andeer PF, Li Z, Crits-Christoph A, Burstein D, Anantharaman K, Lane KR, Thomas BC, Pan C, Northen TR, Banfield JF.

Nat Microbiol. 2019 Aug;4(8):1356-1367. doi: 10.1038/s41564-019-0449-y. Epub 2019 May 20.


TGFβ/BMP immune signaling affects abundance and function of C. elegans gut commensals.

Berg M, Monnin D, Cho J, Nelson L, Crits-Christoph A, Shapira M.

Nat Commun. 2019 Feb 5;10(1):604. doi: 10.1038/s41467-019-08379-8.


Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis.

Crits-Christoph A, Diamond S, Butterfield CN, Thomas BC, Banfield JF.

Nature. 2018 Jun;558(7710):440-444. doi: 10.1038/s41586-018-0207-y. Epub 2018 Jun 13.


Ten Simple Rules for Developing Public Biological Databases.

Helmy M, Crits-Christoph A, Bader GD.

PLoS Comput Biol. 2016 Nov 10;12(11):e1005128. doi: 10.1371/journal.pcbi.1005128. eCollection 2016 Nov. No abstract available.


Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments.

Crits-Christoph A, Robinson CK, Ma B, Ravel J, Wierzchos J, Ascaso C, Artieda O, Souza-Egipsy V, Casero MC, DiRuggiero J.

Front Microbiol. 2016 Mar 9;7:301. doi: 10.3389/fmicb.2016.00301. eCollection 2016.


A benchmark for microRNA quantification algorithms using the OpenArray platform.

McCall MN, Baras AS, Crits-Christoph A, Ingersoll R, McAlexander MA, Witwer KW, Halushka MK.

BMC Bioinformatics. 2016 Mar 22;17:138. doi: 10.1186/s12859-016-0987-8.


Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community.

Crits-Christoph A, Gelsinger DR, Ma B, Wierzchos J, Ravel J, Davila A, Casero MC, DiRuggiero J.

Environ Microbiol. 2016 Jun;18(6):2064-77. doi: 10.1111/1462-2920.13259. Epub 2016 Mar 21.


Colonization patterns of soil microbial communities in the Atacama Desert.

Crits-Christoph A, Robinson CK, Barnum T, Fricke WF, Davila AF, Jedynak B, McKay CP, Diruggiero J.

Microbiome. 2013 Nov 20;1(1):28. doi: 10.1186/2049-2618-1-28.


Microbial diversity and the presence of algae in halite endolithic communities are correlated to atmospheric moisture in the hyper-arid zone of the Atacama Desert.

Robinson CK, Wierzchos J, Black C, Crits-Christoph A, Ma B, Ravel J, Ascaso C, Artieda O, Valea S, Roldán M, Gómez-Silva B, DiRuggiero J.

Environ Microbiol. 2015 Feb;17(2):299-315. doi: 10.1111/1462-2920.12364. Epub 2014 Jan 28.


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