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A Few Stickleback Suffice for the Transport of Alleles to New Lakes.

Galloway J, Cresko WA, Ralph P.

G3 (Bethesda). 2020 Feb 6;10(2):505-514. doi: 10.1534/g3.119.400564.


Highly Reproducible 16S Sequencing Facilitates Measurement of Host Genetic Influences on the Stickleback Gut Microbiome.

Small CM, Currey M, Beck EA, Bassham S, Cresko WA.

mSystems. 2019 Aug 13;4(4). pii: e00331-19. doi: 10.1128/mSystems.00331-19.


Population Genetic Divergence and Environment Influence the Gut Microbiome in Oregon Threespine Stickleback.

Steury RA, Currey MC, Cresko WA, Bohannan BJM.

Genes (Basel). 2019 Jun 26;10(7). pii: E484. doi: 10.3390/genes10070484.


Selection, Linkage, and Population Structure Interact To Shape Genetic Variation Among Threespine Stickleback Genomes.

Nelson TC, Crandall JG, Ituarte CM, Catchen JM, Cresko WA.

Genetics. 2019 Aug;212(4):1367-1382. doi: 10.1534/genetics.119.302261. Epub 2019 Jun 18.


Environmental and Evolutionary Drivers of the Modular Gene Regulatory Network Underlying Phenotypic Plasticity for Stress Resistance in the Nematode Caenorhabditis remanei.

Sikkink KL, Reynolds RM, Ituarte CM, Cresko WA, Phillips PC.

G3 (Bethesda). 2019 Mar 7;9(3):969-982. doi: 10.1534/g3.118.200017.


Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations.

Nelson TC, Cresko WA.

Evol Lett. 2018 Jan 26;2(1):9-21. doi: 10.1002/evl3.37. eCollection 2018 Feb.


Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback.

Bassham S, Catchen J, Lescak E, von Hippel FA, Cresko WA.

Genetics. 2018 Jul;209(3):921-939. doi: 10.1534/genetics.117.300610. Epub 2018 May 24.


Developmental timing differences underlie armor loss across threespine stickleback populations.

Currey MC, Bassham S, Perry S, Cresko WA.

Evol Dev. 2017 Nov;19(6):231-243. doi: 10.1111/ede.12242.


Host Genotype and Microbiota Contribute Asymmetrically to Transcriptional Variation in the Threespine Stickleback Gut.

Small CM, Milligan-Myhre K, Bassham S, Guillemin K, Cresko WA.

Genome Biol Evol. 2017 Mar 1;9(3):504-520. doi: 10.1093/gbe/evx014.


Naturalistic Experimental Designs as Tools for Understanding the Role of Genes and the Environment in Prevention Research.

Leve LD, Neiderhiser JM, Harold GT, Natsuaki MN, Bohannan BJM, Cresko WA.

Prev Sci. 2018 Jan;19(1):68-78. doi: 10.1007/s11121-017-0746-8.


The genome of the Gulf pipefish enables understanding of evolutionary innovations.

Small CM, Bassham S, Catchen J, Amores A, Fuiten AM, Brown RS, Jones AG, Cresko WA.

Genome Biol. 2016 Dec 20;17(1):258.


Exogenous iodide ameliorates perchlorate-induced thyroid phenotypes in threespine stickleback.

Gardell AM, von Hippel FA, Adams EM, Dillon DM, Petersen AM, Postlethwait JH, Cresko WA, Buck CL.

Gen Comp Endocrinol. 2017 Mar 1;243:60-69. doi: 10.1016/j.ygcen.2016.10.014. Epub 2016 Nov 1.


Perchlorate Exposure Reduces Primordial Germ Cell Number in Female Threespine Stickleback.

Petersen AM, Earp NC, Redmond ME, Postlethwait JH, von Hippel FA, Buck CL, Cresko WA.

PLoS One. 2016 Jul 6;11(7):e0157792. doi: 10.1371/journal.pone.0157792. eCollection 2016.


Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations.

Milligan-Myhre K, Small CM, Mittge EK, Agarwal M, Currey M, Cresko WA, Guillemin K.

Dis Model Mech. 2016 Feb;9(2):187-98. doi: 10.1242/dmm.021881. Epub 2015 Dec 17.


Evolution of stickleback in 50 years on earthquake-uplifted islands.

Lescak EA, Bassham SL, Catchen J, Gelmond O, Sherbick ML, von Hippel FA, Cresko WA.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):E7204-12. doi: 10.1073/pnas.1512020112. Epub 2015 Dec 14.


Response to May and Delany: We Never Said Wright was Wrong.

Allendorf FW, Bassham S, Cresko WA, Limborg MT, Seeb LW, Seeb JE.

J Hered. 2015 Nov-Dec;106(6):767-8. doi: 10.1093/jhered/esv072. Epub 2015 Aug 29. No abstract available.


Developmental timing of sodium perchlorate exposure alters angiogenesis, thyroid follicle proliferation and sexual maturation in stickleback.

Furin CG, von Hippel FA, Postlethwait JH, Buck CL, Cresko WA, O'Hara TM.

Gen Comp Endocrinol. 2015 Aug 1;219:24-35. doi: 10.1016/j.ygcen.2015.04.002. Epub 2015 Apr 9.


Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes.

Allendorf FW, Bassham S, Cresko WA, Limborg MT, Seeb LW, Seeb JE.

J Hered. 2015 May-Jun;106(3):217-27. doi: 10.1093/jhered/esv015. Epub 2015 Apr 2. Review.


Environmentally induced changes in correlated responses to selection reveal variable pleiotropy across a complex genetic network.

Sikkink KL, Reynolds RM, Cresko WA, Phillips PC.

Evolution. 2015 May;69(5):1128-42. doi: 10.1111/evo.12651. Epub 2015 May 7.


Developmental timing of perchlorate exposure alters threespine stickleback dermal bone.

Furin CG, von Hippel FA, Postlethwait J, Buck CL, Cresko WA, O'Hara TM.

Gen Comp Endocrinol. 2015 Aug 1;219:36-44. doi: 10.1016/j.ygcen.2015.02.016. Epub 2015 Mar 6.


Perchlorate exposure does not modulate temporal variation of whole-body thyroid and androgen hormone content in threespine stickleback.

Gardell AM, Dillon DM, Smayda LC, von Hippel FA, Cresko WA, Postlethwait JH, Buck CL.

Gen Comp Endocrinol. 2015 Aug 1;219:45-52. doi: 10.1016/j.ygcen.2015.02.014. Epub 2015 Feb 27.


Perchlorate disrupts embryonic androgen synthesis and reproductive development in threespine stickleback without changing whole-body levels of thyroid hormone.

Petersen AM, Dillon D, Bernhardt RR, Torunsky R, Postlethwait JH, von Hippel FA, Loren Buck C, Cresko WA.

Gen Comp Endocrinol. 2015 Jan 1;210:130-44. doi: 10.1016/j.ygcen.2014.10.015. Epub 2014 Nov 10.


The transgenerational effects of heat stress in the nematode Caenorhabditis remanei are negative and rapidly eliminated under direct selection for increased stress resistance in larvae.

Sikkink KL, Ituarte CM, Reynolds RM, Cresko WA, Phillips PC.

Genomics. 2014 Dec;104(6 Pt A):438-46. doi: 10.1016/j.ygeno.2014.09.014. Epub 2014 Oct 2.


Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei.

Sikkink KL, Reynolds RM, Ituarte CM, Cresko WA, Phillips PC.

G3 (Bethesda). 2014 Apr 11;4(6):1103-12. doi: 10.1534/g3.114.010553.


Computational approaches to mine publicly available databases.

Voelker RB, Cresko WA, Berglund JA.

Methods Mol Biol. 2014;1126:325-40. doi: 10.1007/978-1-62703-980-2_24.


The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing.

Catchen J, Bassham S, Wilson T, Currey M, O'Brien C, Yeates Q, Cresko WA.

Mol Ecol. 2013 Jun;22(11):2864-83. doi: 10.1111/mec.12330.


Stacks: an analysis tool set for population genomics.

Catchen J, Hohenlohe PA, Bassham S, Amores A, Cresko WA.

Mol Ecol. 2013 Jun;22(11):3124-40. doi: 10.1111/mec.12354. Epub 2013 May 24.


Geography of the circadian gene clock and photoperiodic response in western North American populations of the three-spined stickleback Gasterosteus aculeatus.

O'Brien C, Unruh L, Zimmerman C, Bradshaw WE, Holzapfel CM, Cresko WA.

J Fish Biol. 2013 Mar;82(3):827-39. doi: 10.1111/jfb.12024.


Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources.

Shen Y, Garcia T, Pabuwal V, Boswell M, Pasquali A, Beldorth I, Warren W, Schartl M, Cresko WA, Walter RB.

Comp Biochem Physiol Part D Genomics Proteomics. 2013 Mar;8(1):11-6. doi: 10.1016/j.cbd.2012.10.006. Epub 2012 Nov 9.


Footprints in time: comparative quantitative trait loci mapping of the pitcher-plant mosquito, Wyeomyia smithii.

Bradshaw WE, Emerson KJ, Catchen JM, Cresko WA, Holzapfel CM.

Proc Biol Sci. 2012 Nov 22;279(1747):4551-8. doi: 10.1098/rspb.2012.1917. Epub 2012 Sep 26.


Developmental dissociation in morphological evolution of the stickleback opercle.

Kimmel CB, Hohenlohe PA, Ullmann B, Currey M, Cresko WA.

Evol Dev. 2012 Jul;14(4):326-37. doi: 10.1111/j.1525-142X.2012.00551.x.


Population genomic analysis of model and nonmodel organisms using sequenced RAD tags.

Hohenlohe PA, Catchen J, Cresko WA.

Methods Mol Biol. 2012;888:235-60. doi: 10.1007/978-1-61779-870-2_14.


Conservation of the photoperiodic neuroendocrine axis among vertebrates: evidence from the teleost fish, Gasterosteus aculeatus.

O'Brien CS, Bourdo R, Bradshaw WE, Holzapfel CM, Cresko WA.

Gen Comp Endocrinol. 2012 Aug 1;178(1):19-27. doi: 10.1016/j.ygcen.2012.03.010. Epub 2012 Apr 6.


Independent axes of genetic variation and parallel evolutionary divergence of opercle bone shape in threespine stickleback.

Kimmel CB, Cresko WA, Phillips PC, Ullmann B, Currey M, von Hippel F, Kristj√°nsson BK, Gelmond O, McGuigan K.

Evolution. 2012 Feb;66(2):419-34. doi: 10.1111/j.1558-5646.2011.01441.x. Epub 2011 Sep 25.


Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes.

Hohenlohe PA, Bassham S, Currey M, Cresko WA.

Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):395-408. doi: 10.1098/rstb.2011.0245.


SNP discovery and genotyping for evolutionary genetics using RAD sequencing.

Etter PD, Bassham S, Hohenlohe PA, Johnson EA, Cresko WA.

Methods Mol Biol. 2011;772:157-78. doi: 10.1007/978-1-61779-228-1_9.


Distinct lineages of Schistocephalus parasites in threespine and ninespine stickleback hosts revealed by DNA sequence analysis.

Nishimura N, Heins DC, Andersen RO, Barber I, Cresko WA.

PLoS One. 2011;6(7):e22505. doi: 10.1371/journal.pone.0022505. Epub 2011 Jul 19.


Quantitative genetic variation in static allometry in the threespine stickleback.

McGuigan K, Nishimura N, Currey M, Hurwit D, Cresko WA.

Integr Comp Biol. 2010 Dec;50(6):1067-80. doi: 10.1093/icb/icq026. Epub 2010 Apr 25.


Local de novo assembly of RAD paired-end contigs using short sequencing reads.

Etter PD, Preston JL, Bassham S, Cresko WA, Johnson EA.

PLoS One. 2011 Apr 13;6(4):e18561. doi: 10.1371/journal.pone.0018561.


Cryptic genetic variation and body size evolution in threespine stickleback.

McGuigan K, Nishimura N, Currey M, Hurwit D, Cresko WA.

Evolution. 2011 Apr;65(4):1203-11. doi: 10.1111/j.1558-5646.2010.01195.x. Epub 2010 Dec 22.


Resolving postglacial phylogeography using high-throughput sequencing.

Emerson KJ, Merz CR, Catchen JM, Hohenlohe PA, Cresko WA, Bradshaw WE, Holzapfel CM.

Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16196-200. doi: 10.1073/pnas.1006538107. Epub 2010 Aug 26.


Latitudinal variation in photoperiodic response of the three-spined stickleback Gasterosteus aculeatus in western North America.

Yeates-Burghart QS, O'Brien C, Cresko WA, Holzapfel CM, Bradshaw WE.

J Fish Biol. 2009 Nov;75(8):2075-81. doi: 10.1111/j.1095-8649.2009.02418.x.


Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags.

Hohenlohe PA, Bassham S, Etter PD, Stiffler N, Johnson EA, Cresko WA.

PLoS Genet. 2010 Feb 26;6(2):e1000862. doi: 10.1371/journal.pgen.1000862.


Rapid SNP discovery and genetic mapping using sequenced RAD markers.

Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA.

PLoS One. 2008;3(10):e3376. doi: 10.1371/journal.pone.0003376. Epub 2008 Oct 13.


Evolution. Armor development and fitness.

Cresko WA.

Science. 2008 Oct 10;322(5899):204-6. doi: 10.1126/science.1165663. No abstract available.


Female-specific increase in primordial germ cells marks sex differentiation in threespine stickleback (Gasterosteus aculeatus).

Lewis ZR, McClellan MC, Postlethwait JH, Cresko WA, Kaplan RH.

J Morphol. 2008 Aug;269(8):909-21.


Duplication and divergence of fgf8 functions in teleost development and evolution.

Jovelin R, He X, Amores A, Yan YL, Shi R, Qin B, Roe B, Cresko WA, Postlethwait JH.

J Exp Zool B Mol Dev Evol. 2007 Dec 15;308(6):730-43.


Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers.

Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA.

Genome Res. 2007 Feb;17(2):240-8. Epub 2006 Dec 22.

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