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Genetic Diversity and Phylogenetic Relationships of Annual and Perennial Glycine Species.

Hwang EY, Wei H, Schroeder SG, Fickus EW, Quigley CV, Elia P, Araya S, Dong F, Costa L, Ferreira ME, Cregan PB, Song Q.

G3 (Bethesda). 2019 Jul 9;9(7):2325-2336. doi: 10.1534/g3.119.400220.


Genetic Architecture of Soybean Yield and Agronomic Traits.

Diers BW, Specht J, Rainey KM, Cregan P, Song Q, Ramasubramanian V, Graef G, Nelson R, Schapaugh W, Wang D, Shannon G, McHale L, Kantartzi SK, Xavier A, Mian R, Stupar RM, Michno JM, An YC, Goettel W, Ward R, Fox C, Lipka AE, Hyten D, Cary T, Beavis WD.

G3 (Bethesda). 2018 Oct 3;8(10):3367-3375. doi: 10.1534/g3.118.200332.


Genome-wide Scan for Seed Composition Provides Insights into Soybean Quality Improvement and the Impacts of Domestication and Breeding.

Zhang J, Wang X, Lu Y, Bhusal SJ, Song Q, Cregan PB, Yen Y, Brown M, Jiang GL.

Mol Plant. 2018 Mar 5;11(3):460-472. doi: 10.1016/j.molp.2017.12.016. Epub 2018 Jan 2.


Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population.

Xavier A, Jarquin D, Howard R, Ramasubramanian V, Specht JE, Graef GL, Beavis WD, Diers BW, Song Q, Cregan PB, Nelson R, Mian R, Shannon JG, McHale L, Wang D, Schapaugh W, Lorenz AJ, Xu S, Muir WM, Rainey KM.

G3 (Bethesda). 2018 Feb 2;8(2):519-529. doi: 10.1534/g3.117.300300.


Genetic Characterization of the Soybean Nested Association Mapping Population.

Song Q, Yan L, Quigley C, Jordan BD, Fickus E, Schroeder S, Song BH, Charles An YQ, Hyten D, Nelson R, Rainey K, Beavis WD, Specht J, Diers B, Cregan P.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.10.0109.


Mapping novel aphid resistance QTL from wild soybean, Glycine soja 85-32.

Zhang S, Zhang Z, Bales C, Gu C, DiFonzo C, Li M, Song Q, Cregan P, Yang Z, Wang D.

Theor Appl Genet. 2017 Sep;130(9):1941-1952. doi: 10.1007/s00122-017-2935-z. Epub 2017 Jul 14.


Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses.

Yan L, Hofmann N, Li S, Ferreira ME, Song B, Jiang G, Ren S, Quigley C, Fickus E, Cregan P, Song Q.

BMC Genomics. 2017 Jul 12;18(1):529. doi: 10.1186/s12864-017-3922-0.


High-resolution mapping reveals linkage between genes in common bean cultivar Ouro Negro conferring resistance to the rust, anthracnose, and angular leaf spot diseases.

Valentini G, Gonçalves-Vidigal MC, Hurtado-Gonzales OP, de Lima Castro SA, Cregan PB, Song Q, Pastor-Corrales MA.

Theor Appl Genet. 2017 Aug;130(8):1705-1722. doi: 10.1007/s00122-017-2920-6. Epub 2017 May 30.


Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

Vuong TD, Walker DR, Nguyen BT, Nguyen TT, Dinh HX, Hyten DL, Cregan PB, Sleper DA, Lee JD, Shannon JG, Nguyen HT.

PLoS One. 2016 Dec 9;11(12):e0164493. doi: 10.1371/journal.pone.0164493. eCollection 2016.


Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean.

Moghaddam SM, Mamidi S, Osorno JM, Lee R, Brick M, Kelly J, Miklas P, Urrea C, Song Q, Cregan P, Grimwood J, Schmutz J, McClean PE.

Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2016.02.0012.


Genome-wide association mapping of partial resistance to Phytophthora sojae in soybean plant introductions from the Republic of Korea.

Schneider R, Rolling W, Song Q, Cregan P, Dorrance AE, McHale LK.

BMC Genomics. 2016 Aug 11;17(1):607. doi: 10.1186/s12864-016-2918-5.


Multi-Population Selective Genotyping to Identify Soybean [Glycine max (L.) Merr.] Seed Protein and Oil QTLs.

Phansak P, Soonsuwon W, Hyten DL, Song Q, Cregan PB, Graef GL, Specht JE.

G3 (Bethesda). 2016 Jun 1;6(6):1635-48. doi: 10.1534/g3.116.027656.


Draft genome sequence of Diaporthe aspalathi isolate MS-SSC91, a fungus causing stem canker in soybean.

Li S, Song Q, Martins AM, Cregan P.

Genom Data. 2016 Feb 2;7:262-3. doi: 10.1016/j.gdata.2016.02.002. eCollection 2016 Mar.


Phenotypic variation and identification of quantitative trait loci for ozone tolerance in a Fiskeby III × Mandarin (Ottawa) soybean population.

Burton AL, Burkey KO, Carter TE Jr, Orf J, Cregan PB.

Theor Appl Genet. 2016 Jun;129(6):1113-25. doi: 10.1007/s00122-016-2687-1. Epub 2016 Feb 26.


Characterization of Soybean Storage and Allergen Proteins Affected by Environmental and Genetic Factors.

Natarajan S, Khan F, Song Q, Lakshman S, Cregan P, Scott R, Shipe E, Garrett W.

J Agric Food Chem. 2016 Feb 17;64(6):1433-45. doi: 10.1021/acs.jafc.5b05172. Epub 2016 Feb 5.


Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.

Song Q, Jenkins J, Jia G, Hyten DL, Pantalone V, Jackson SA, Schmutz J, Cregan PB.

BMC Genomics. 2016 Jan 6;17:33. doi: 10.1186/s12864-015-2344-0.


Genome-wide association study, genomic prediction and marker-assisted selection for seed weight in soybean (Glycine max).

Zhang J, Song Q, Cregan PB, Jiang GL.

Theor Appl Genet. 2016 Jan;129(1):117-30. doi: 10.1007/s00122-015-2614-x. Epub 2015 Oct 30.


Novel single-nucleotide polymorphisms in the calsequestrin-1 gene are associated with Graves' ophthalmopathy and Hashimoto's thyroiditis.

Lahooti H, Cultrone D, Edirimanne S, Walsh JP, Delbridge L, Cregan P, Champion B, Wall JR.

Clin Ophthalmol. 2015 Sep 18;9:1731-40. doi: 10.2147/OPTH.S87972. eCollection 2015.


Genome-Wide Association Study of Ureide Concentration in Diverse Maturity Group IV Soybean [Glycine max (L.) Merr.] Accessions.

Ray JD, Dhanapal AP, Singh SK, Hoyos-Villegas V, Smith JR, Purcell LC, King CA, Boykin D, Cregan PB, Song Q, Fritschi FB.

G3 (Bethesda). 2015 Sep 14;5(11):2391-403. doi: 10.1534/g3.115.021774.


Genomic consequences of selection and genome-wide association mapping in soybean.

Wen Z, Boyse JF, Song Q, Cregan PB, Wang D.

BMC Genomics. 2015 Sep 3;16:671. doi: 10.1186/s12864-015-1872-y.


SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean.

Song Q, Jia G, Hyten DL, Jenkins J, Hwang EY, Schroeder SG, Osorno JM, Schmutz J, Jackson SA, McClean PE, Cregan PB.

G3 (Bethesda). 2015 Aug 28;5(11):2285-90. doi: 10.1534/g3.115.020594.


Fingerprinting Soybean Germplasm and Its Utility in Genomic Research.

Song Q, Hyten DL, Jia G, Quigley CV, Fickus EW, Nelson RL, Cregan PB.

G3 (Bethesda). 2015 Jul 28;5(10):1999-2006. doi: 10.1534/g3.115.019000. Erratum in: G3 (Bethesda). 2016 Feb;6(2):495.


Confirmation of delayed canopy wilting QTLs from multiple soybean mapping populations.

Hwang S, King CA, Ray JD, Cregan PB, Chen P, Carter TE Jr, Li Z, Abdel-Haleem H, Matson KW, Schapaugh W Jr, Purcell LC.

Theor Appl Genet. 2015 Oct;128(10):2047-65. doi: 10.1007/s00122-015-2566-1. Epub 2015 Jul 12.


Fine Mapping and Characterization of Candidate Genes that Control Resistance to Cercospora sojina K. Hara in Two Soybean Germplasm Accessions.

Pham AT, Harris DK, Buck J, Hoskins A, Serrano J, Abdel-Haleem H, Cregan P, Song Q, Boerma HR, Li Z.

PLoS One. 2015 May 19;10(5):e0126753. doi: 10.1371/journal.pone.0126753. eCollection 2015.


Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm.

Zhang J, Song Q, Cregan PB, Nelson RL, Wang X, Wu J, Jiang GL.

BMC Genomics. 2015 Mar 20;16:217. doi: 10.1186/s12864-015-1441-4.


Identification of novel QTL governing root architectural traits in an interspecific soybean population.

Manavalan LP, Prince SJ, Musket TA, Chaky J, Deshmukh R, Vuong TD, Song L, Cregan PB, Nelson JC, Shannon JG, Specht JE, Nguyen HT.

PLoS One. 2015 Mar 10;10(3):e0120490. doi: 10.1371/journal.pone.0120490. eCollection 2015.


Draft Genome Sequence of Phomopsis longicolla Type Strain TWH P74, a Fungus Causing Phomopsis Seed Decay in Soybean.

Li S, Song Q, Ji P, Cregan P.

Genome Announc. 2015 Feb 19;3(1). pii: e00010-15. doi: 10.1128/genomeA.00010-15.


QTL for seed protein and amino acids in the Benning × Danbaekkong soybean population.

Warrington CV, Abdel-Haleem H, Hyten DL, Cregan PB, Orf JH, Killam AS, Bajjalieh N, Li Z, Boerma HR.

Theor Appl Genet. 2015 May;128(5):839-50. doi: 10.1007/s00122-015-2474-4. Epub 2015 Feb 12.


Erratum to: Genome-wide association study (GWAS) of carbon isotope ratio (δ(13)C) in diverse soybean [Glycine max (L.) Merr.] genotypes.

Dhanapal AP, Ray JD, Singh SK, Hoyos-Villegas V, Smith JR, Purcell LC, Andy King C, Cregan PB, Song Q, Fritschi FB.

Theor Appl Genet. 2015 Feb;128(2):375-6. doi: 10.1007/s00122-014-2450-4. No abstract available.


Genome-wide association study (GWAS) of carbon isotope ratio (δ13C) in diverse soybean [Glycine max (L.) Merr.] genotypes.

Dhanapal AP, Ray JD, Singh SK, Hoyos-Villegas V, Smith JR, Purcell LC, Andy King C, Cregan PB, Song Q, Fritschi FB.

Theor Appl Genet. 2015 Jan;128(1):73-91. doi: 10.1007/s00122-014-2413-9. Epub 2014 Nov 4. Erratum in: Theor Appl Genet. 2015 Feb;128(2):375-6.


Application of in silico bulked segregant analysis for rapid development of markers linked to Bean common mosaic virus resistance in common bean.

Bello MH, Moghaddam SM, Massoudi M, McClean PE, Cregan PB, Miklas PN.

BMC Genomics. 2014 Oct 16;15:903. doi: 10.1186/1471-2164-15-903.


Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655.

Jiao Y, Vuong TD, Liu Y, Meinhardt C, Liu Y, Joshi T, Cregan PB, Xu D, Shannon JG, Nguyen HT.

Theor Appl Genet. 2015 Jan;128(1):15-23. doi: 10.1007/s00122-014-2409-5. Epub 2014 Oct 15.


Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean.

Wen Z, Tan R, Yuan J, Bales C, Du W, Zhang S, Chilvers MI, Schmidt C, Song Q, Cregan PB, Wang D.

BMC Genomics. 2014 Sep 23;15:809. doi: 10.1186/1471-2164-15-809.


The genetic architecture of seed composition in soybean is refined by genome-wide association scans across multiple populations.

Vaughn JN, Nelson RL, Song Q, Cregan PB, Li Z.

G3 (Bethesda). 2014 Sep 22;4(11):2283-94. doi: 10.1534/g3.114.013433.


A reference genome for common bean and genome-wide analysis of dual domestications.

Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, Barry K, Blair M, Brick MA, Chovatia M, Gepts P, Goodstein DM, Gonzales M, Hellsten U, Hyten DL, Jia G, Kelly JD, Kudrna D, Lee R, Richard MM, Miklas PN, Osorno JM, Rodrigues J, Thareau V, Urrea CA, Wang M, Yu Y, Zhang M, Wing RA, Cregan PB, Rokhsar DS, Jackson SA.

Nat Genet. 2014 Jul;46(7):707-13. doi: 10.1038/ng.3008. Epub 2014 Jun 8.


Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean.

Wang X, Jiang GL, Green M, Scott RA, Song Q, Hyten DL, Cregan PB.

Mol Genet Genomics. 2014 Oct;289(5):935-49. doi: 10.1007/s00438-014-0865-x. Epub 2014 May 27.


Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.

Moghaddam SM, Song Q, Mamidi S, Schmutz J, Lee R, Cregan P, Osorno JM, McClean PE.

Front Plant Sci. 2014 May 13;5:185. doi: 10.3389/fpls.2014.00185. eCollection 2014.


A roadmap for functional structural variants in the soybean genome.

Anderson JE, Kantar MB, Kono TY, Fu F, Stec AO, Song Q, Cregan PB, Specht JE, Diers BW, Cannon SB, McHale LK, Stupar RM.

G3 (Bethesda). 2014 May 22;4(7):1307-18. doi: 10.1534/g3.114.011551.


Systematic review of skills transfer after surgical simulation-based training.

Dawe SR, Pena GN, Windsor JA, Broeders JA, Cregan PC, Hewett PJ, Maddern GJ.

Br J Surg. 2014 Aug;101(9):1063-76. doi: 10.1002/bjs.9482. Epub 2014 May 15. Review.


A genome-wide association study of seed protein and oil content in soybean.

Hwang EY, Song Q, Jia G, Specht JE, Hyten DL, Costa J, Cregan PB.

BMC Genomics. 2014 Jan 2;15:1. doi: 10.1186/1471-2164-15-1.


Mapping the low palmitate fap1 mutation and validation of its effects in soybean oil and agronomic traits in three soybean populations.

Cardinal AJ, Whetten R, Wang S, Auclair J, Hyten D, Cregan P, Bachlava E, Gillman J, Ramirez M, Dewey R, Upchurch G, Miranda L, Burton JW.

Theor Appl Genet. 2014 Jan;127(1):97-111. doi: 10.1007/s00122-013-2204-8. Epub 2013 Oct 17.


A systematic review of surgical skills transfer after simulation-based training: laparoscopic cholecystectomy and endoscopy.

Dawe SR, Windsor JA, Broeders JA, Cregan PC, Hewett PJ, Maddern GJ.

Ann Surg. 2014 Feb;259(2):236-48. doi: 10.1097/SLA.0000000000000245. Review.


Inheritance of soybean aphid resistance in 21 soybean plant introductions.

Fox CM, Kim KS, Cregan PB, Hill CB, Hartman GL, Diers BW.

Theor Appl Genet. 2014 Jan;127(1):43-50. doi: 10.1007/s00122-013-2199-1. Epub 2013 Sep 27.


Mapping soybean aphid resistance genes in PI 567598B.

Bales C, Zhang G, Liu M, Mensah C, Gu C, Song Q, Hyten D, Cregan P, Wang D.

Theor Appl Genet. 2013 Aug;126(8):2081-91. doi: 10.1007/s00122-013-2120-y. Epub 2013 May 21.


Development and evaluation of SoySNP50K, a high-density genotyping array for soybean.

Song Q, Hyten DL, Jia G, Quigley CV, Fickus EW, Nelson RL, Cregan PB.

PLoS One. 2013;8(1):e54985. doi: 10.1371/journal.pone.0054985. Epub 2013 Jan 25.


Surgical services: shaping future directions.

MacLellan DG, Smyth T, Cregan PC, Lizzio J, Watt H.

ANZ J Surg. 2012 Jan-Feb;82(1-2):68-72. doi: 10.1111/j.1445-2197.2011.05955.x. Epub 2011 Dec 15.


Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean.

Du J, Tian Z, Sui Y, Zhao M, Song Q, Cannon SB, Cregan P, Ma J.

Plant Cell. 2012 Jan;24(1):21-32. doi: 10.1105/tpc.111.092759. Epub 2012 Jan 6.


Identification of a second Asian soybean rust resistance gene in Hyuuga soybean.

Kendrick MD, Harris DK, Ha BK, Hyten DL, Cregan PB, Frederick RD, Boerma HR, Pedley KF.

Phytopathology. 2011 May;101(5):535-43. doi: 10.1094/PHYTO-09-10-0257.


High-throughput SNP discovery and assay development in common bean.

Hyten DL, Song Q, Fickus EW, Quigley CV, Lim JS, Choi IY, Hwang EY, Pastor-Corrales M, Cregan PB.

BMC Genomics. 2010 Aug 16;11:475. doi: 10.1186/1471-2164-11-475.


Acute Surgical Unit: a new model of care.

Cox MR, Cook L, Dobson J, Lambrakis P, Ganesh S, Cregan P.

ANZ J Surg. 2010 Jun;80(6):419-24. doi: 10.1111/j.1445-2197.2010.05331.x.


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