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Items: 1 to 50 of 60

1.

Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing.

Nascimento FJA, Lallias D, Bik HM, Creer S.

Sci Rep. 2018 Aug 6;8(1):11737. doi: 10.1038/s41598-018-30179-1.

2.

Taking the perspective of the narrator.

Creer SD, Cook AE, O'Brien EJ.

Q J Exp Psychol (Hove). 2018 Jun 1:1747021818779496. doi: 10.1177/1747021818779496. [Epub ahead of print]

PMID:
29747551
3.

Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples.

Bista I, Carvalho GR, Tang M, Walsh K, Zhou X, Hajibabaei M, Shokralla S, Seymour M, Bradley D, Liu S, Christmas M, Creer S.

Mol Ecol Resour. 2018 Apr 18. doi: 10.1111/1755-0998.12888. [Epub ahead of print]

PMID:
29667329
4.

Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes.

Marburger S, Alexandrou MA, Taggart JB, Creer S, Carvalho G, Oliveira C, Taylor MI.

Proc Biol Sci. 2018 Feb 14;285(1872). pii: 20172732. doi: 10.1098/rspb.2017.2732.

5.

Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea.

Lamb PD, Hunter E, Pinnegar JK, Creer S, Davies RG, Taylor MI.

R Soc Open Sci. 2017 Nov 29;4(11):171421. doi: 10.1098/rsos.171421. eCollection 2017 Nov.

6.

Detecting macroecological patterns in bacterial communities across independent studies of global soils.

Ramirez KS, Knight CG, de Hollander M, Brearley FQ, Constantinides B, Cotton A, Creer S, Crowther TW, Davison J, Delgado-Baquerizo M, Dorrepaal E, Elliott DR, Fox G, Griffiths RI, Hale C, Hartman K, Houlden A, Jones DL, Krab EJ, Maestre FT, McGuire KL, Monteux S, Orr CH, van der Putten WH, Roberts IS, Robinson DA, Rocca JD, Rowntree J, Schlaeppi K, Shepherd M, Singh BK, Straathof AL, Bhatnagar JM, Thion C, van der Heijden MGA, de Vries FT.

Nat Microbiol. 2018 Feb;3(2):189-196. doi: 10.1038/s41564-017-0062-x. Epub 2017 Nov 20.

PMID:
29158606
7.

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities.

Deiner K, Bik HM, Mächler E, Seymour M, Lacoursière-Roussel A, Altermatt F, Creer S, Bista I, Lodge DM, de Vere N, Pfrender ME, Bernatchez L.

Mol Ecol. 2017 Nov;26(21):5872-5895. doi: 10.1111/mec.14350. Epub 2017 Oct 26. Review.

8.

Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems.

Potter C, Freeman C, Golyshin PN, Ackermann G, Fenner N, McDonald JE, Ehbair A, Jones TG, Murphy LM, Creer S.

Sci Rep. 2017 Sep 12;7(1):11314. doi: 10.1038/s41598-017-11546-w.

9.

Marine ecology: Genetics from a drop in the ocean.

Creer S, Seymour M.

Nat Ecol Evol. 2017 Jan 4;1(1):37. doi: 10.1038/s41559-016-0037. No abstract available.

PMID:
28812550
10.

Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach.

Fonseca VG, Sinniger F, Gaspar JM, Quince C, Creer S, Power DM, Peck LS, Clark MS.

Sci Rep. 2017 Jul 21;7(1):6094. doi: 10.1038/s41598-017-06687-x.

11.

Provision of powered communication aids in the United Kingdom.

Judge S, Enderby P, Creer S, John A.

Augment Altern Commun. 2017 Sep;33(3):181-187. doi: 10.1080/07434618.2017.1347960. Epub 2017 Jul 11.

12.

Parasitism perturbs the mucosal microbiome of Atlantic Salmon.

Llewellyn MS, Leadbeater S, Garcia C, Sylvain FE, Custodio M, Ang KP, Powell F, Carvalho GR, Creer S, Elliot J, Derome N.

Sci Rep. 2017 Mar 7;7:43465. doi: 10.1038/srep43465.

13.

Using DNA metabarcoding to investigate honey bee foraging reveals limited flower use despite high floral availability.

de Vere N, Jones LE, Gilmore T, Moscrop J, Lowe A, Smith D, Hegarty MJ, Creer S, Ford CR.

Sci Rep. 2017 Feb 16;7:42838. doi: 10.1038/srep42838.

14.

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity.

Bista I, Carvalho GR, Walsh K, Seymour M, Hajibabaei M, Lallias D, Christmas M, Creer S.

Nat Commun. 2017 Jan 18;8:14087. doi: 10.1038/ncomms14087.

15.

Tideless estuaries in brackish seas as possible freshwater-marine transition zones for bacteria: the case study of the Vistula river estuary.

Gołębiewski M, Całkiewicz J, Creer S, Piwosz K.

Environ Microbiol Rep. 2017 Apr;9(2):129-143. doi: 10.1111/1758-2229.12509. Epub 2017 Jan 23.

PMID:
27935224
16.

Plasticity in growth of farmed and wild Atlantic salmon: is the increased growth rate of farmed salmon caused by evolutionary adaptations to the commercial diet?

Harvey AC, Solberg MF, Troianou E, Carvalho GR, Taylor MI, Creer S, Dyrhovden L, Matre IH, Glover KA.

BMC Evol Biol. 2016 Dec 1;16(1):264.

17.

Prevalence of people who could benefit from augmentative and alternative communication (AAC) in the UK: determining the need.

Creer S, Enderby P, Judge S, John A.

Int J Lang Commun Disord. 2016 Nov;51(6):639-653. doi: 10.1111/1460-6984.12235. Epub 2016 Apr 26.

18.

Does density influence relative growth performance of farm, wild and F1 hybrid Atlantic salmon in semi-natural and hatchery common garden conditions?

Harvey AC, Juleff G, Carvalho GR, Taylor MI, Solberg MF, Creer S, Dyrhovden L, Matre IH, Glover KA.

R Soc Open Sci. 2016 Jul 6;3(7):160152. doi: 10.1098/rsos.160152. eCollection 2016 Jul.

19.

Plasticity in response to feed availability: Does feeding regime influence the relative growth performance of domesticated, wild and hybrid Atlantic salmon Salmo salar parr?

Harvey AC, Solberg MF, Glover KA, Taylor MI, Creer S, Carvalho GR.

J Fish Biol. 2016 Sep;89(3):1754-68. doi: 10.1111/jfb.13076. Epub 2016 Jul 27.

PMID:
27460446
20.

A common garden design reveals population-specific variability in potential impacts of hybridization between populations of farmed and wild Atlantic salmon, Salmo salar L.

Harvey AC, Glover KA, Taylor MI, Creer S, Carvalho GR.

Evol Appl. 2016 Jan 27;9(3):435-49. doi: 10.1111/eva.12346. eCollection 2016 Mar.

21.

Coexisting cryptic species of the Litoditis marina complex (Nematoda) show differential resource use and have distinct microbiomes with high intraspecific variability.

Derycke S, De Meester N, Rigaux A, Creer S, Bik H, Thomas WK, Moens T.

Mol Ecol. 2016 May;25(9):2093-110. doi: 10.1111/mec.13597. Epub 2016 Mar 28.

22.

The biogeography of the atlantic salmon (Salmo salar) gut microbiome.

Llewellyn MS, McGinnity P, Dionne M, Letourneau J, Thonier F, Carvalho GR, Creer S, Derome N.

ISME J. 2016 May;10(5):1280-4. doi: 10.1038/ismej.2015.189. Epub 2015 Oct 30.

23.

The importance of being genomic: Non-coding and coding sequences suggest different models of toxin multi-gene family evolution.

Malhotra A, Creer S, Harris JB, Thorpe RS.

Toxicon. 2015 Dec 1;107(Pt B):344-58. doi: 10.1016/j.toxicon.2015.08.009. Epub 2015 Sep 7.

PMID:
26359851
24.

Convergence of multiple markers and analysis methods defines the genetic distinctiveness of cryptic pitvipers.

Mrinalini, Thorpe RS, Creer S, Lallias D, Dawnay L, Stuart BL, Malhotra A.

Mol Phylogenet Evol. 2015 Nov;92:266-79. doi: 10.1016/j.ympev.2015.06.001. Epub 2015 Jul 8.

PMID:
26162672
25.

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems.

Lallias D, Hiddink JG, Fonseca VG, Gaspar JM, Sung W, Neill SP, Barnes N, Ferrero T, Hall N, Lambshead PJ, Packer M, Thomas WK, Creer S.

ISME J. 2015 May;9(5):1208-21. doi: 10.1038/ismej.2014.213. Epub 2014 Nov 25.

26.

Environmental DNA for wildlife biology and biodiversity monitoring.

Bohmann K, Evans A, Gilbert MT, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn M.

Trends Ecol Evol. 2014 Jun;29(6):358-67. doi: 10.1016/j.tree.2014.04.003. Epub 2014 May 10. Review. Erratum in: Trends Ecol Evol. 2014 Aug;29(8):485.

PMID:
24821515
27.

A critique of Rossberg et al.: Noise obscures the genetic signal of meiobiotal ecospecies in ecogenomic datasets.

Morgan MJ, Bass D, Bik H, Birky CW, Blaxter M, Crisp MD, Derycke S, Fitch D, Fontaneto D, Hardy CM, King AJ, Kiontke KC, Moens T, Pawlowski JW, Porazinska D, Tang CQ, Thomas WK, Yeates DK, Creer S.

Proc Biol Sci. 2014 Mar 26;281(1783):20133076. doi: 10.1098/rspb.2013.3076. Print 2014 May 22. No abstract available.

28.

SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing.

Montes I, Conklin D, Albaina A, Creer S, Carvalho GR, Santos M, Estonba A.

PLoS One. 2013 Aug 1;8(8):e70051. doi: 10.1371/journal.pone.0070051. Print 2013.

29.

Predicting function from sequence in a large multifunctional toxin family.

Malhotra A, Creer S, Harris JB, Stöcklin R, Favreau P, Thorpe RS.

Toxicon. 2013 Sep;72:113-25. doi: 10.1016/j.toxicon.2013.06.019. Epub 2013 Jul 4.

30.

Can long-range PCR be used to amplify genetically divergent mitochondrial genomes for comparative phylogenetics? A case study within spiders (Arthropoda: Araneae).

Briscoe AG, Goodacre S, Masta SE, Taylor MI, Arnedo MA, Penney D, Kenny J, Creer S.

PLoS One. 2013 May 8;8(5):e62404. doi: 10.1371/journal.pone.0062404. Print 2013.

31.

Plastic and heritable variation in shell thickness of the intertidal gastropod Nucella lapillus associated with risks of crab predation and wave action, and sexual maturation.

Pascoal S, Carvalho G, Creer S, Mendo S, Hughes R.

PLoS One. 2012;7(12):e52134. doi: 10.1371/journal.pone.0052134. Epub 2012 Dec 13.

32.

Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus.

Pascoal S, Carvalho G, Vasieva O, Hughes R, Cossins A, Fang Y, Ashelford K, Olohan L, Barroso C, Mendo S, Creer S.

Mol Ecol. 2013 Mar;22(6):1589-608. doi: 10.1111/mec.12137. Epub 2012 Dec 3.

PMID:
23205577
33.

Newly qualified SCPHN? Tips for your first year in practice.

Creer S.

Community Pract. 2012 Aug;85(8):38-9. No abstract available.

PMID:
22919788
34.

Cosmopolitanism of microbial eukaryotes in the global deep seas.

Creer S, Sinniger F.

Mol Ecol. 2012 Mar;21(5):1033-5. doi: 10.1111/j.1365-294X.2012.05437.x.

PMID:
22360453
35.

Plastic and heritable components of phenotypic variation in Nucella lapillus: an assessment using reciprocal transplant and common garden experiments.

Pascoal S, Carvalho G, Creer S, Rock J, Kawaii K, Mendo S, Hughes R.

PLoS One. 2012;7(1):e30289. doi: 10.1371/journal.pone.0030289. Epub 2012 Jan 27.

36.

Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses.

Fonseca VG, Nichols B, Lallias D, Quince C, Carvalho GR, Power DM, Creer S.

Nucleic Acids Res. 2012 May;40(9):e66. doi: 10.1093/nar/gks002. Epub 2012 Jan 25.

37.

Sequencing our way towards understanding global eukaryotic biodiversity.

Bik HM, Porazinska DL, Creer S, Caporaso JG, Knight R, Thomas WK.

Trends Ecol Evol. 2012 Apr;27(4):233-43. doi: 10.1016/j.tree.2011.11.010. Epub 2012 Jan 11. Review.

38.

Multigene molecular systematics confirm species status of morphologically convergent Pagurus hermit crabs.

Matzen da Silva J, Dos Santos A, Cunha MR, Costa FO, Creer S, Carvalho GR.

PLoS One. 2011;6(12):e28233. doi: 10.1371/journal.pone.0028233. Epub 2011 Dec 9.

39.

Systematic and evolutionary insights derived from mtDNA COI barcode diversity in the Decapoda (Crustacea: Malacostraca).

Matzen da Silva J, Creer S, dos Santos A, Costa AC, Cunha MR, Costa FO, Carvalho GR.

PLoS One. 2011 May 12;6(5):e19449. doi: 10.1371/journal.pone.0019449.

40.

Reconstructing the voice of an individual following laryngectomy.

Khan ZA, Green P, Creer S, Cunningham S.

Augment Altern Commun. 2011 Mar;27(1):61-6. doi: 10.3109/07434618.2010.545078. Epub 2011 Feb 2.

PMID:
21284563
41.

Competition and phylogeny determine community structure in Müllerian co-mimics.

Alexandrou MA, Oliveira C, Maillard M, McGill RA, Newton J, Creer S, Taylor MI.

Nature. 2011 Jan 6;469(7328):84-8. doi: 10.1038/nature09660.

PMID:
21209663
42.

Second-generation environmental sequencing unmasks marine metazoan biodiversity.

Fonseca VG, Carvalho GR, Sung W, Johnson HF, Power DM, Neill SP, Packer M, Blaxter ML, Lambshead PJ, Thomas WK, Creer S.

Nat Commun. 2010 Oct 19;1:98. doi: 10.1038/ncomms1095.

43.

Temporal genetic homogeneity among shore crab (Carcinus maenas) larval events supplied to an estuarine system on the Portuguese northwest coast.

Domingues CP, Creer S, Taylor MI, Queiroga H, Carvalho GR.

Heredity (Edinb). 2011 May;106(5):832-40. doi: 10.1038/hdy.2010.126. Epub 2010 Oct 20.

44.

Retention of functional DC-NK cross-talk following up to 18 weeks therapy interruptions in chronically suppressed HIV type 1+ subjects.

Papasavvas E, Chehimi J, Azzoni L, Pistilli M, Thiel B, Mackiewicz A, Creer S, Mounzer K, Kostman JR, Montaner LJ.

AIDS Res Hum Retroviruses. 2010 Oct;26(10):1047-9. doi: 10.1089/aid.2010.0020. Epub 2010 Aug 18. No abstract available.

45.

Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists.

Creer S.

Mol Ecol. 2010 Jul;19(14):2829-31. doi: 10.1111/j.1365-294X.2010.04670.x. No abstract available.

PMID:
20663052
46.

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

Creer S, Fonseca VG, Porazinska DL, Giblin-Davis RM, Sung W, Power DM, Packer M, Carvalho GR, Blaxter ML, Lambshead PJ, Thomas WK.

Mol Ecol. 2010 Mar;19 Suppl 1:4-20. doi: 10.1111/j.1365-294X.2009.04473.x. Review.

PMID:
20331766
47.

Development and application of microsatellites in Carcinus maenas: genetic differentiation between Northern and Central Portuguese populations.

Pascoal S, Creer S, Taylor MI, Queiroga H, Carvalho G, Mendo S.

PLoS One. 2009 Sep 30;4(9):e7268. doi: 10.1371/journal.pone.0007268.

48.

Inclusion of nuclear intron sequence data helps to identify the Asian sister group of New World pitvipers.

Malhotra A, Creer S, Pook CE, Thorpe RS.

Mol Phylogenet Evol. 2010 Jan;54(1):172-8. doi: 10.1016/j.ympev.2009.09.007. Epub 2009 Sep 13.

PMID:
19755163
49.

Circulating monocytes in HIV-1-infected viremic subjects exhibit an antiapoptosis gene signature and virus- and host-mediated apoptosis resistance.

Giri MS, Nebozyhn M, Raymond A, Gekonge B, Hancock A, Creer S, Nicols C, Yousef M, Foulkes AS, Mounzer K, Shull J, Silvestri G, Kostman J, Collman RG, Showe L, Montaner LJ.

J Immunol. 2009 Apr 1;182(7):4459-70. doi: 10.4049/jimmunol.0801450.

50.

Baseline viral load and immune activation determine the extent of reconstitution of innate immune effectors in HIV-1-infected subjects undergoing antiretroviral treatment.

Chehimi J, Azzoni L, Farabaugh M, Creer SA, Tomescu C, Hancock A, Mackiewicz A, D'Alessandro L, Ghanekar S, Foulkes AS, Mounzer K, Kostman J, Montaner LJ.

J Immunol. 2007 Aug 15;179(4):2642-50.

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