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Items: 9

1.

How and Why to Build a Unified Tree of Life.

McTavish EJ, Drew BT, Redelings B, Cranston KA.

Bioessays. 2017 Nov;39(11). doi: 10.1002/bies.201700114. Epub 2017 Oct 5. Review.

PMID:
28980328
2.

Synthesis of phylogeny and taxonomy into a comprehensive tree of life.

Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD 4th, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12764-9. doi: 10.1073/pnas.1423041112. Epub 2015 Sep 18.

3.

Phylesystem: a git-based data store for community-curated phylogenetic estimates.

McTavish EJ, Hinchliff CE, Allman JF, Brown JW, Cranston KA, Holder MT, Rees JA, Smith SA.

Bioinformatics. 2015 Sep 1;31(17):2794-800. doi: 10.1093/bioinformatics/btv276. Epub 2015 May 4.

4.

The Fossil Calibration Database-A New Resource for Divergence Dating.

Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, Patané JL, Polly PD, Phillips MJ, Smith NA, Smith ND, Van Tuinen M, Ware JL, Warnock RC.

Syst Biol. 2015 Sep;64(5):853-9. doi: 10.1093/sysbio/syv025. Epub 2015 Apr 27.

PMID:
25922515
5.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D.

Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011.

6.

Species trees from highly incongruent gene trees in rice.

Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA.

Syst Biol. 2009 Oct;58(5):489-500. doi: 10.1093/sysbio/syp054. Epub 2009 Sep 21.

PMID:
20525603
7.

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.

Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, Jackson S, Wing RA.

Plant J. 2010 Aug;63(3):430-42. doi: 10.1111/j.1365-313X.2010.04251.x. Epub 2010 May 6.

8.

The PhyLoTA Browser: processing GenBank for molecular phylogenetics research.

Sanderson MJ, Boss D, Chen D, Cranston KA, Wehe A.

Syst Biol. 2008 Jun;57(3):335-46. doi: 10.1080/10635150802158688.

PMID:
18570030
9.

Summarizing a posterior distribution of trees using agreement subtrees.

Cranston KA, Rannala B.

Syst Biol. 2007 Aug;56(4):578-90.

PMID:
17654363

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