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Day-Night Activity in Hospitalized Children after Major Surgery: An Analysis of 2271 Hospital Days.

Kudchadkar SR, Aljohani O, Johns J, Leroux A, Alsafi E, Jastaniah E, Gottschalk A, Shata NJ, Al-Harbi A, Gergen D, Nadkarni A, Crainiceanu C.

J Pediatr. 2019 Mar 15. pii: S0022-3476(19)30154-4. doi: 10.1016/j.jpeds.2019.01.054. [Epub ahead of print]


Retinal measurements predict 10-year disability in multiple sclerosis.

Rothman A, Murphy OC, Fitzgerald KC, Button J, Gordon-Lipkin E, Ratchford JN, Newsome SD, Mowry EM, Sotirchos ES, Syc-Mazurek SB, Nguyen J, Caldito NG, Balcer LJ, Frohman EM, Frohman TC, Reich DS, Crainiceanu C, Saidha S, Calabresi PA.

Ann Clin Transl Neurol. 2019 Jan 19;6(2):222-232. doi: 10.1002/acn3.674. eCollection 2019 Feb.


Imaging outcome measures of neuroprotection and repair in MS: A consensus statement from NAIMS.

Oh J, Ontaneda D, Azevedo C, Klawiter EC, Absinta M, Arnold DL, Bakshi R, Calabresi PA, Crainiceanu C, Dewey B, Freeman L, Gauthier S, Henry R, Inglese M, Kolind S, Li DKB, Mainero C, Menon RS, Nair G, Narayanan S, Nelson F, Pelletier D, Rauscher A, Rooney W, Sati P, Schwartz D, Shinohara RT, Tagge I, Traboulsee A, Wang Y, Yoo Y, Yousry T, Zhang Y, Sicotte NL, Reich DS; North American Imaging in Multiple Sclerosis Cooperative.

Neurology. 2019 Mar 12;92(11):519-533. doi: 10.1212/WNL.0000000000007099. Epub 2019 Feb 20. Review.


Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis.

Sotirchos ES, Gonzalez-Caldito N, Dewey BE, Fitzgerald KC, Glaister J, Filippatou A, Ogbuokiri E, Feldman S, Kwakyi O, Risher H, Crainiceanu C, Pham DL, Van Zijl PC, Mowry EM, Reich DS, Prince JL, Calabresi PA, Saidha S.

Mult Scler. 2019 Feb 11:1352458519826364. doi: 10.1177/1352458519826364. [Epub ahead of print]


Reporting of R2 Statistics for Mixed-Effects Regression Models.

Sotirchos ES, Fitzgerald KC, Crainiceanu CM.

JAMA Neurol. 2019 Feb 4. doi: 10.1001/jamaneurol.2018.4720. [Epub ahead of print] No abstract available.


Real-time Mobile Monitoring of the Dynamic Associations Among Motor Activity, Energy, Mood, and Sleep in Adults With Bipolar Disorder.

Merikangas KR, Swendsen J, Hickie IB, Cui L, Shou H, Merikangas AK, Zhang J, Lamers F, Crainiceanu C, Volkow ND, Zipunnikov V.

JAMA Psychiatry. 2018 Dec 12. doi: 10.1001/jamapsychiatry.2018.3546. [Epub ahead of print]


Brain and retinal atrophy in African-Americans versus Caucasian-Americans with multiple sclerosis: a longitudinal study.

Caldito NG, Saidha S, Sotirchos ES, Dewey BE, Cowley NJ, Glaister J, Fitzgerald KC, Al-Louzi O, Nguyen J, Rothman A, Ogbuokiri E, Fioravante N, Feldman S, Kwakyi O, Risher H, Kimbrough D, Frohman TC, Frohman E, Balcer L, Crainiceanu C, Van Zijl PCM, Mowry EM, Reich DS, Oh J, Pham DL, Prince J, Calabresi PA.

Brain. 2018 Nov 1;141(11):3115-3129. doi: 10.1093/brain/awy245.


The upstrap.

Crainiceanu CM, Crainiceanu A.

Biostatistics. 2018 Sep 25. doi: 10.1093/biostatistics/kxy054. [Epub ahead of print]


freesurfer: Connecting the Freesurfer software with R.

Muschelli J, Sweeney E, Crainiceanu CM.

F1000Res. 2018 May 16;7:599. doi: 10.12688/f1000research.14361.1. eCollection 2018.


A practical guide to big data.

Smirnova E, Ivanescu A, Bai J, Crainiceanu CM.

Stat Probab Lett. 2018 May;136:25-29. doi: 10.1016/j.spl.2018.02.014. Epub 2018 Mar 1.


Arsenic exposure, diabetes-related genes and diabetes prevalence in a general population from Spain.

Grau-Perez M, Navas-Acien A, Galan-Chilet I, Briongos-Figuero LS, Morchon-Simon D, Bermudez JD, Crainiceanu CM, de Marco G, Rentero-Garrido P, Garcia-Barrera T, Gomez-Ariza JL, Casasnovas JA, Martin-Escudero JC, Redon J, Chaves FJ, Tellez-Plaza M.

Environ Pollut. 2018 Apr;235:948-955. doi: 10.1016/j.envpol.2018.01.008. Epub 2018 Feb 21.


Visual Pathway Measures are Associated with Neuropsychological Function in Multiple Sclerosis.

Nguyen J, Rothman A, Fitzgerald K, Whetstone A, Syc-Mazurek S, Aquino J, Balcer LJ, Frohman EM, Frohman TC, Crainiceanu C, Beier M, Newsome SD, Calabresi PA, Saidha S.

Curr Eye Res. 2018 Jul;43(7):941-948. doi: 10.1080/02713683.2018.1459730. Epub 2018 May 1.


Using Heart Rate and Accelerometry to Define Quantity and Intensity of Physical Activity in Older Adults.

Schrack JA, Leroux A, Fleg JL, Zipunnikov V, Simonsick EM, Studenski SA, Crainiceanu C, Ferrucci L.

J Gerontol A Biol Sci Med Sci. 2018 Apr 17;73(5):668-675. doi: 10.1093/gerona/gly029.


Novel metrics for growth model selection.

Grigsby MR, Di J, Leroux A, Zipunnikov V, Xiao L, Crainiceanu C, Checkley W.

Emerg Themes Epidemiol. 2018 Feb 23;15:4. doi: 10.1186/s12982-018-0072-z. eCollection 2018.


Fast covariance estimation for sparse functional data.

Xiao L, Li C, Checkley W, Crainiceanu C.

Stat Comput. 2018;28(3):511-522. doi: 10.1007/s11222-017-9744-8. Epub 2017 Apr 11.


Big Data and Neuroimaging.

Webb-Vargas Y, Chen S, Fisher A, Mejia A, Xu Y, Crainiceanu C, Caffo B, Lindquist MA.

Stat Biosci. 2017 Dec;9(2):543-558. doi: 10.1007/s12561-017-9195-y. Epub 2017 May 22.


Prediction of sustained harmonic walking in the free-living environment using raw accelerometry data.

Urbanek JK, Zipunnikov V, Harris T, Fadel W, Glynn N, Koster A, Caserotti P, Crainiceanu C, Harezlak J.

Physiol Meas. 2018 Feb 28;39(2):02NT02. doi: 10.1088/1361-6579/aaa74d.


Neuroconductor: an R platform for medical imaging analysis.

Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM.

Biostatistics. 2019 Apr 1;20(2):218-239. doi: 10.1093/biostatistics/kxx068.


Epidemiology of objectively measured bedtime and chronotype in US adolescents and adults: NHANES 2003-2006.

Urbanek JK, Spira AP, Di J, Leroux A, Crainiceanu C, Zipunnikov V.

Chronobiol Int. 2018 Mar;35(3):416-434. doi: 10.1080/07420528.2017.1411359. Epub 2017 Dec 28.


Dynamic prediction in functional concurrent regression with an application to child growth.

Leroux A, Xiao L, Crainiceanu C, Checkley W.

Stat Med. 2018 Apr 15;37(8):1376-1388. doi: 10.1002/sim.7582. Epub 2017 Dec 11.


Obstructive Sleep Apnea during REM Sleep and Cardiovascular Disease.

Aurora RN, Crainiceanu C, Gottlieb DJ, Kim JS, Punjabi NM.

Am J Respir Crit Care Med. 2018 Mar 1;197(5):653-660. doi: 10.1164/rccm.201706-1112OC.


The NAIMS cooperative pilot project: Design, implementation and future directions.

Oh J, Bakshi R, Calabresi PA, Crainiceanu C, Henry RG, Nair G, Papinutto N, Constable RT, Reich DS, Pelletier D, Rooney W, Schwartz D, Tagge I, Shinohara RT, Simon JH, Sicotte NL; NAIMS Cooperative Steering Committee.

Mult Scler. 2018 Nov;24(13):1770-1772. doi: 10.1177/1352458517739990. Epub 2017 Nov 6.


Simple fixed-effects inference for complex functional models.

Park SY, Staicu AM, Xiao L, Crainiceanu CM.

Biostatistics. 2018 Apr 1;19(2):137-152. doi: 10.1093/biostatistics/kxx026.


Declining exposures to lead and cadmium contribute to explaining the reduction of cardiovascular mortality in the US population, 1988-2004.

Ruiz-Hernandez A, Navas-Acien A, Pastor-Barriuso R, Crainiceanu CM, Redon J, Guallar E, Tellez-Plaza M.

Int J Epidemiol. 2017 Dec 1;46(6):1903-1912. doi: 10.1093/ije/dyx176.


A two-stage model for wearable device data.

Bai J, Sun Y, Schrack JA, Crainiceanu CM, Wang MC.

Biometrics. 2018 Jun;74(2):744-752. doi: 10.1111/biom.12781. Epub 2017 Oct 10.


Validation of Gait Characteristics Extracted From Raw Accelerometry During Walking Against Measures of Physical Function, Mobility, Fatigability, and Fitness.

Urbanek JK, Zipunnikov V, Harris T, Crainiceanu C, Harezlak J, Glynn NW.

J Gerontol A Biol Sci Med Sci. 2018 Apr 17;73(5):676-681. doi: 10.1093/gerona/glx174.


Dysregulation of objectively assessed 24-hour motor activity patterns as a potential marker for bipolar I disorder: results of a community-based family study.

Shou H, Cui L, Hickie I, Lameira D, Lamers F, Zhang J, Crainiceanu C, Zipunnikov V, Merikangas KR.

Transl Psychiatry. 2017 Aug 22;7(8):e1211. doi: 10.1038/tp.2017.136.


Evidence of bias in randomized clinical trials of hepatitis C interferon therapies.

Tinè F, Attanasio M, Muggeo VMR, Crainiceanu CM.

Clin Trials. 2017 Oct;14(5):483-488. doi: 10.1177/1740774517715447. Epub 2017 Jul 1. Review.


High-dimensional multivariate mediation with application to neuroimaging data.

Chén OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA.

Biostatistics. 2018 Apr 1;19(2):121-136. doi: 10.1093/biostatistics/kxx027.


Chronic arsenic exposure and risk of carotid artery disease: The Strong Heart Study.

Mateen FJ, Grau-Perez M, Pollak JS, Moon KA, Howard BV, Umans JG, Best LG, Francesconi KA, Goessler W, Crainiceanu C, Guallar E, Devereux RB, Roman MJ, Navas-Acien A.

Environ Res. 2017 Aug;157:127-134. doi: 10.1016/j.envres.2017.05.020. Epub 2017 May 26.


Longitudinal multiple sclerosis lesion segmentation data resource.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL.

Data Brief. 2017 Apr 8;12:346-350. doi: 10.1016/j.dib.2017.04.004. eCollection 2017 Jun.


Obesity History and Daily Patterns of Physical Activity at Age 60-64 Years: Findings From the MRC National Survey of Health and Development.

Cooper R, Huang L, Hardy R, Crainiceanu A, Harris T, Schrack JA, Crainiceanu C, Kuh D.

J Gerontol A Biol Sci Med Sci. 2017 Oct 1;72(10):1424-1430. doi: 10.1093/gerona/glw331.


PItcHPERFeCT: Primary Intracranial Hemorrhage Probability Estimation using Random Forests on CT.

Muschelli J, Sweeney EM, Ullman NL, Vespa P, Hanley DF, Crainiceanu CM.

Neuroimage Clin. 2017 Feb 15;14:379-390. doi: 10.1016/j.nicl.2017.02.007. eCollection 2017.


Parametrization of white matter manifold-like structures using principal surfaces.

Yue C, Zipunnikov V, Bazin PL, Pham D, Reich D, Crainiceanu C, Caffo B.

J Am Stat Assoc. 2016;111(515):1050-1060. doi: 10.1080/01621459.2016.1164050. Epub 2016 Oct 18.


Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Prados F, Sudre CH, Jorge Cardoso M, Cawley N, Ciccarelli O, Wheeler-Kingshott CAM, Ourselin S, Catanese L, Deshpande H, Maurel P, Commowick O, Barillot C, Tomas-Fernandez X, Warfield SK, Vaidya S, Chunduru A, Muthuganapathy R, Krishnamurthi G, Jesson A, Arbel T, Maier O, Handels H, Iheme LO, Unay D, Jain S, Sima DM, Smeets D, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL.

Neuroimage. 2017 Mar 1;148:77-102. doi: 10.1016/j.neuroimage.2016.12.064. Epub 2017 Jan 11.


Stride variability measures derived from wrist- and hip-worn accelerometers.

Urbanek JK, Harezlak J, Glynn NW, Harris T, Crainiceanu C, Zipunnikov V.

Gait Posture. 2017 Feb;52:217-223. doi: 10.1016/j.gaitpost.2016.11.045. Epub 2016 Nov 30.


Reproducibility and Bias in Healthy Brain Segmentation: Comparison of Two Popular Neuroimaging Platforms.

Tudorascu DL, Karim HT, Maronge JM, Alhilali L, Fakhran S, Aizenstein HJ, Muschelli J, Crainiceanu CM.

Front Neurosci. 2016 Nov 9;10:503. eCollection 2016.


Automatic car driving detection using raw accelerometry data.

Strączkiewicz M, Urbanek JK, Fadel WF, Crainiceanu CM, Harezlak J.

Physiol Meas. 2016 Oct;37(10):1757-1769. Epub 2016 Sep 21.


Two-way principal component analysis for matrix-variate data, with an application to functional magnetic resonance imaging data.

Huang L, Reiss PT, Xiao L, Zipunnikov V, Lindquist MA, Crainiceanu CM.

Biostatistics. 2017 Apr 1;18(2):214-229. doi: 10.1093/biostatistics/kxw040.


An Activity Index for Raw Accelerometry Data and Its Comparison with Other Activity Metrics.

Bai J, Di C, Xiao L, Evenson KR, LaCroix AZ, Crainiceanu CM, Buchner DM.

PLoS One. 2016 Aug 11;11(8):e0160644. doi: 10.1371/journal.pone.0160644. eCollection 2016.


Habitual Sleep Duration and All-Cause Mortality in a General Community Sample.

Aurora RN, Kim JS, Crainiceanu C, O'Hearn D, Punjabi NM.

Sleep. 2016 Nov 1;39(11):1903-1909.


fslr: Connecting the FSL Software with R.

Muschelli J, Sweeney E, Lindquist M, Crainiceanu C.

R J. 2015 Jun;7(1):163-175.


Influence of Lung Function and Sleep-disordered Breathing on All-Cause Mortality. A Community-based Study.

Putcha N, Crainiceanu C, Norato G, Samet J, Quan SF, Gottlieb DJ, Redline S, Punjabi NM.

Am J Respir Crit Care Med. 2016 Oct 15;194(8):1007-1014.


Testing differentially expressed genes in dose-response studies and with ordinal phenotypes.

Sweeney E, Crainiceanu C, Gertheiss J.

Stat Appl Genet Mol Biol. 2016 Jun 1;15(3):213-35. doi: 10.1515/sagmb-2015-0091.


Removing inter-subject technical variability in magnetic resonance imaging studies.

Fortin JP, Sweeney EM, Muschelli J, Crainiceanu CM, Shinohara RT; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2016 May 15;132:198-212. doi: 10.1016/j.neuroimage.2016.02.036. Epub 2016 Feb 23.


Fast Covariance Estimation for High-dimensional Functional Data.

Xiao L, Zipunnikov V, Ruppert D, Crainiceanu C.

Stat Comput. 2016 Jan 1;26(1):409-421. Epub 2014 Jun 27.


Modelling subject-specific childhood growth using linear mixed-effect models with cubic regression splines.

Grajeda LM, Ivanescu A, Saito M, Crainiceanu C, Jaganath D, Gilman RH, Crabtree JE, Kelleher D, Cabrera L, Cama V, Checkley W.

Emerg Themes Epidemiol. 2016 Jan 7;13:1. doi: 10.1186/s12982-015-0038-3. eCollection 2016.


Soft Null Hypotheses: A Case Study of Image Enhancement Detection in Brain Lesions.

Shou H, Shinohara RT, Liu H, Reich DS, Crainiceanu CM.

J Comput Graph Stat. 2016;25(2):570-588. doi: 10.1080/10618600.2015.1023396. Epub 2016 May 10.


Relating multi-sequence longitudinal intensity profiles and clinical covariates in incident multiple sclerosis lesions.

Sweeney EM, Shinohara RT, Dewey BE, Schindler MK, Muschelli J, Reich DS, Crainiceanu CM, Eloyan A.

Neuroimage Clin. 2015 Nov 11;10:1-17. doi: 10.1016/j.nicl.2015.10.013. eCollection 2016.

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