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Items: 1 to 50 of 103

1.

Phylogenomics provides robust support for a two-domains tree of life.

Williams TA, Cox CJ, Foster PG, Szöllősi GJ, Embley TM.

Nat Ecol Evol. 2020 Jan;4(1):138-147. doi: 10.1038/s41559-019-1040-x. Epub 2019 Dec 9.

PMID:
31819234
2.

A meta-taxonomic investigation of the prokaryotic diversity of water bodies impacted by acid mine drainage from the São Domingos mine in southern Portugal.

Ettamimi S, Carlier JD, Cox CJ, Elamine Y, Hammani K, Ghazal H, Costa MC.

Extremophiles. 2019 Nov;23(6):821-834. doi: 10.1007/s00792-019-01136-1. Epub 2019 Oct 9.

PMID:
31598797
3.

A haplotype-resolved draft genome of the European sardine (Sardina pilchardus).

Louro B, De Moro G, Garcia C, Cox CJ, Veríssimo A, Sabatino SJ, Santos AM, Canário AVM.

Gigascience. 2019 May 1;8(5). pii: giz059. doi: 10.1093/gigascience/giz059.

4.

Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes.

Liu Y, Johnson MG, Cox CJ, Medina R, Devos N, Vanderpoorten A, Hedenäs L, Bell NE, Shevock JR, Aguero B, Quandt D, Wickett NJ, Shaw AJ, Goffinet B.

Nat Commun. 2019 Apr 2;10(1):1485. doi: 10.1038/s41467-019-09454-w.

5.

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria.

Karimi E, Keller-Costa T, Slaby BM, Cox CJ, da Rocha UN, Hentschel U, Costa R.

Sci Rep. 2019 Feb 13;9(1):1999. doi: 10.1038/s41598-019-38737-x.

6.

Improved phylogeny of brown algae Cystoseira (Fucales) from the Atlantic-Mediterranean region based on mitochondrial sequences.

Bruno de Sousa C, Cox CJ, Brito L, Pavão MM, Pereira H, Ferreira A, Ginja C, Campino L, Bermejo R, Parente M, Varela J.

PLoS One. 2019 Jan 30;14(1):e0210143. doi: 10.1371/journal.pone.0210143. eCollection 2019.

7.

Reversible Structure Formation of Aluminum Trihydroxide (ATH) Dispersions in Polydimethylsiloxane (PDMS).

Cox CJ, Hovey B, Fornes TD, Khan SA.

Langmuir. 2019 Jan 8;35(1):237-247. doi: 10.1021/acs.langmuir.8b03577. Epub 2018 Dec 26.

PMID:
30525656
8.

Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.).

de Sousa F, Foster PG, Donoghue PCJ, Schneider H, Cox CJ.

New Phytol. 2019 Apr;222(1):565-575. doi: 10.1111/nph.15587. Epub 2018 Dec 7.

PMID:
30411803
9.

Circulating small non-coding RNAs provide new insights into vitamin K nutrition and reproductive physiology in teleost fish.

Fernández I, Fernandes JMO, Roberto VP, Kopp M, Oliveira C, Riesco MF, Dias J, Cox CJ, Leonor Cancela M, Cabrita E, Gavaia P.

Biochim Biophys Acta Gen Subj. 2019 Jan;1863(1):39-51. doi: 10.1016/j.bbagen.2018.09.017. Epub 2018 Sep 27.

PMID:
30268730
10.

The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte.

Puttick MN, Morris JL, Williams TA, Cox CJ, Edwards D, Kenrick P, Pressel S, Wellman CH, Schneider H, Pisani D, Donoghue PCJ.

Curr Biol. 2018 Mar 5;28(5):733-745.e2. doi: 10.1016/j.cub.2018.01.063. Epub 2018 Feb 15.

11.

Identification of a fish short-chain dehydrogenase/reductase associated with bone metabolism.

Rosa J, Cox CJ, Cancela ML, Laizé V.

Gene. 2018 Mar 1;645:137-145. doi: 10.1016/j.gene.2017.12.021. Epub 2017 Dec 14.

PMID:
29248578
12.

Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery.

Califano G, Castanho S, Soares F, Ribeiro L, Cox CJ, Mata L, Costa R.

Front Microbiol. 2017 Feb 14;8:204. doi: 10.3389/fmicb.2017.00204. eCollection 2017.

13.

Alzheimer's Research UK 2016 Conference report.

Sancho RM, Cox CJ, Phipps LE, Ridley SH.

Alzheimers Res Ther. 2016 Sep 15;8(1):35. doi: 10.1186/s13195-016-0203-0. Review.

14.

Surface-atmosphere decoupling limits accumulation at Summit, Greenland.

Berkelhammer M, Noone DC, Steen-Larsen HC, Bailey A, Cox CJ, O'Neill MS, Schneider D, Steffen K, White JW.

Sci Adv. 2016 Apr 29;2(4):e1501704. doi: 10.1126/sciadv.1501704. eCollection 2016 Apr.

15.

Cardiac myosin-Th17 responses promote heart failure in human myocarditis.

Myers JM, Cooper LT, Kem DC, Stavrakis S, Kosanke SD, Shevach EM, Fairweather D, Stoner JA, Cox CJ, Cunningham MW.

JCI Insight. 2016 Jun 16;1(9). pii: 85851. doi: 10.1172/jci.insight.85851.

16.

Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss).

Jonathan Shaw A, Devos N, Liu Y, Cox CJ, Goffinet B, Flatberg KI, Shaw B.

Ann Bot. 2016 Aug;118(2):185-96. doi: 10.1093/aob/mcw086. Epub 2016 Jun 6.

17.

Multiple domestications of Asian rice.

Civán P, Craig H, Cox CJ, Brown TA.

Nat Plants. 2016 Apr 5;2:16037. doi: 10.1038/nplants.2016.37. No abstract available.

PMID:
27249567
18.

Vegetation and floristics of a lowland tropical rainforest in northeast Australia.

Tng DY, Apgaua DM, Campbell MJ, Cox CJ, Crayn DM, Ishida FY, Laidlaw MJ, Liddell MJ, Seager M, Laurance SG.

Biodivers Data J. 2016 Feb 24;(4):e7599. doi: 10.3897/BDJ.4.e7599. eCollection 2016.

19.

Increased diversification rates follow shifts to bisexuality in liverworts.

Laenen B, Machac A, Gradstein SR, Shaw B, Patiño J, Désamoré A, Goffinet B, Cox CJ, Shaw AJ, Vanderpoorten A.

New Phytol. 2016 May;210(3):1121-9. doi: 10.1111/nph.13835. Epub 2016 Feb 1.

20.

Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal Infections (PANDAS).

Orefici G, Cardona F, Cox CJ, Cunningham MW.

In: Ferretti JJ, Stevens DL, Fischetti VA, editors. Streptococcus pyogenes : Basic Biology to Clinical Manifestations [Internet]. Oklahoma City (OK): University of Oklahoma Health Sciences Center; 2016-.
2016 Feb 10.

21.

Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms.

Rathore OS, Faustino A, Prudêncio P, Van Damme P, Cox CJ, Martinho RG.

Sci Rep. 2016 Feb 10;6:21304. doi: 10.1038/srep21304.

22.

Humidity trends imply increased sensitivity to clouds in a warming Arctic.

Cox CJ, Walden VP, Rowe PM, Shupe MD.

Nat Commun. 2015 Dec 10;6:10117. doi: 10.1038/ncomms10117.

23.

Pazopanib Maintenance Therapy in East Asian Women With Advanced Epithelial Ovarian Cancer: Results From AGO-OVAR16 and an East Asian Study.

Kim JW, Mahner S, Wu LY, Shoji T, Kim BG, Zhu JQ, Takano T, Park SY, Kong BH, Wu Q, Wang KL, Ngan HY, Liu JH, Wei LH, Mitrica I, Zhang P, Crescenzo R, Wang Q, Cox CJ, Harter P, du Bois A.

Int J Gynecol Cancer. 2018 Jan;28(1):2-10. doi: 10.1097/IGC.0000000000000602.

PMID:
26588236
24.

Autoimmunity against dopamine receptors in neuropsychiatric and movement disorders: a review of Sydenham chorea and beyond.

Cunningham MW, Cox CJ.

Acta Physiol (Oxf). 2016 Jan;216(1):90-100. doi: 10.1111/apha.12614. Epub 2015 Nov 5. Review.

25.

Accurate interrogation of FCGR3A rs396991 in European and Asian populations using a widely available TaqMan genotyping method.

Murphy KE, Niederer HA, King KS, Harris EC, Glass SM, Cox CJ.

Pharmacogenet Genomics. 2015 Nov;25(11):569-72. doi: 10.1097/FPC.0000000000000175.

26.

Comparative analysis of zebrafish bone morphogenetic proteins 2, 4 and 16: molecular and evolutionary perspectives.

Marques CL, Fernández I, Viegas MN, Cox CJ, Martel P, Rosa J, Cancela ML, Laizé V.

Cell Mol Life Sci. 2016 Feb;73(4):841-57. doi: 10.1007/s00018-015-2024-x. Epub 2015 Sep 4.

PMID:
26341094
27.

Comprehensive genome-wide evaluation of lapatinib-induced liver injury yields a single genetic signal centered on known risk allele HLA-DRB1*07:01.

Parham LR, Briley LP, Li L, Shen J, Newcombe PJ, King KS, Slater AJ, Dilthey A, Iqbal Z, McVean G, Cox CJ, Nelson MR, Spraggs CF.

Pharmacogenomics J. 2016 Apr;16(2):180-5. doi: 10.1038/tpj.2015.40. Epub 2015 May 19.

28.

Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula.

Pearson GA, Lago-Leston A, Cánovas F, Cox CJ, Verret F, Lasternas S, Duarte CM, Agusti S, Serrão EA.

ISME J. 2015 Oct;9(10):2275-89. doi: 10.1038/ismej.2015.40. Epub 2015 Apr 14.

29.

A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures.

Ramos AA, Weydmann A, Cox CJ, Canário AV, Serrão EA, Pearson GA.

Mar Genomics. 2015 Oct;23:27-9. doi: 10.1016/j.margen.2015.03.014. Epub 2015 Apr 8.

PMID:
25863290
30.

Antineuronal antibodies in a heterogeneous group of youth and young adults with tics and obsessive-compulsive disorder.

Cox CJ, Zuccolo AJ, Edwards EV, Mascaro-Blanco A, Alvarez K, Stoner J, Chang K, Cunningham MW.

J Child Adolesc Psychopharmacol. 2015 Feb;25(1):76-85. doi: 10.1089/cap.2014.0048. Epub 2015 Feb 6.

31.

Report from the Alzheimer's Research UK Conference 2015.

Sancho RM, Cox CJ, Ridley SH, Phipps LE, Karran E.

Alzheimers Res Ther. 2015 Jul 28;7(1):52. doi: 10.1186/s13195-015-0138-x.

32.

Three geographically separate domestications of Asian rice.

Civáň P, Craig H, Cox CJ, Brown TA.

Nat Plants. 2015 Nov 2;1:15164. doi: 10.1038/nplants.2015.164.

33.

Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges.

Hardoim CC, Cardinale M, Cúcio AC, Esteves AI, Berg G, Xavier JR, Cox CJ, Costa R.

Front Microbiol. 2014 Nov 18;5:611. doi: 10.3389/fmicb.2014.00611. eCollection 2014.

34.

Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts.

Laenen B, Shaw B, Schneider H, Goffinet B, Paradis E, Désamoré A, Heinrichs J, Villarreal JC, Gradstein SR, McDaniel SF, Long DG, Forrest LL, Hollingsworth ML, Crandall-Stotler B, Davis EC, Engel J, Von Konrat M, Cooper ED, Patiño J, Cox CJ, Vanderpoorten A, Shaw AJ.

Nat Commun. 2014 Oct 27;5:5134. doi: 10.1038/ncomms6134.

PMID:
25346115
35.

Dietary (-)-epicatechin as a potent inhibitor of βγ-secretase amyloid precursor protein processing.

Cox CJ, Choudhry F, Peacey E, Perkinton MS, Richardson JC, Howlett DR, Lichtenthaler SF, Francis PT, Williams RJ.

Neurobiol Aging. 2015 Jan;36(1):178-87. doi: 10.1016/j.neurobiolaging.2014.07.032. Epub 2014 Jul 30.

36.

Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias.

Liu Y, Cox CJ, Wang W, Goffinet B.

Syst Biol. 2014 Nov;63(6):862-78. doi: 10.1093/sysbio/syu049. Epub 2014 Jul 28.

PMID:
25070972
37.

Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins.

Li B, Lopes JS, Foster PG, Embley TM, Cox CJ.

Mol Biol Evol. 2014 Jul;31(7):1697-709. doi: 10.1093/molbev/msu105. Epub 2014 May 2.

38.

Evolutionary conservation of TFIIH subunits: implications for the use of zebrafish as a model to study TFIIH function and regulation.

Silva IA, Cox CJ, Leite RB, Cancela ML, Conceição N.

Comp Biochem Physiol B Biochem Mol Biol. 2014 Jun-Jul;172-173:9-20. doi: 10.1016/j.cbpb.2014.03.007. Epub 2014 Apr 13.

PMID:
24731924
39.

Prospective validation of HLA-DRB1*07:01 allele carriage as a predictive risk factor for lapatinib-induced liver injury.

Schaid DJ, Spraggs CF, McDonnell SK, Parham LR, Cox CJ, Ejlertsen B, Finkelstein DM, Rappold E, Curran J, Cardon LR, Goss PE.

J Clin Oncol. 2014 Aug 1;32(22):2296-303. doi: 10.1200/JCO.2013.52.9867. Epub 2014 Mar 31.

PMID:
24687830
40.

Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants.

Civaň P, Foster PG, Embley MT, Séneca A, Cox CJ.

Genome Biol Evol. 2014 Apr;6(4):897-911. doi: 10.1093/gbe/evu061.

41.

Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions.

Cox CJ, Li B, Foster PG, Embley TM, Civán P.

Syst Biol. 2014 Mar;63(2):272-9. doi: 10.1093/sysbio/syt109. Epub 2014 Jan 6. No abstract available.

42.

An archaeal origin of eukaryotes supports only two primary domains of life.

Williams TA, Foster PG, Cox CJ, Embley TM.

Nature. 2013 Dec 12;504(7479):231-6. doi: 10.1038/nature12779. Review.

PMID:
24336283
43.

AMPA receptor activation promotes non-amyloidogenic amyloid precursor protein processing and suppresses neuronal amyloid-β production.

Hoey SE, Buonocore F, Cox CJ, Hammond VJ, Perkinton MS, Williams RJ.

PLoS One. 2013 Oct 24;8(10):e78155. doi: 10.1371/journal.pone.0078155. eCollection 2013.

44.

Brain human monoclonal autoantibody from sydenham chorea targets dopaminergic neurons in transgenic mice and signals dopamine D2 receptor: implications in human disease.

Cox CJ, Sharma M, Leckman JF, Zuccolo J, Zuccolo A, Kovoor A, Swedo SE, Cunningham MW.

J Immunol. 2013 Dec 1;191(11):5524-41. doi: 10.4049/jimmunol.1102592. Epub 2013 Nov 1.

45.

Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva.

Hardoim CC, Cox CJ, Peixoto RS, Rosado AS, Costa R, van Elsas JD.

Braz J Microbiol. 2013 May 31;44(1):329-34. doi: 10.1590/S1517-83822013000100048. eCollection 2013.

46.

A 20-state empirical amino-acid substitution model for green plant chloroplasts.

Cox CJ, Foster PG.

Mol Phylogenet Evol. 2013 Aug;68(2):218-20. doi: 10.1016/j.ympev.2013.03.030. Epub 2013 Apr 6.

PMID:
23567023
47.

July 2012 Greenland melt extent enhanced by low-level liquid clouds.

Bennartz R, Shupe MD, Turner DD, Walden VP, Steffen K, Cox CJ, Kulie MS, Miller NB, Pettersen C.

Nature. 2013 Apr 4;496(7443):83-6. doi: 10.1038/nature12002.

PMID:
23552947
48.

Phylogenetically and spatially close marine sponges harbour divergent bacterial communities.

Hardoim CC, Esteves AI, Pires FR, Gonçalves JM, Cox CJ, Xavier JR, Costa R.

PLoS One. 2012;7(12):e53029. doi: 10.1371/journal.pone.0053029. Epub 2012 Dec 27.

49.

A congruent phylogenomic signal places eukaryotes within the Archaea.

Williams TA, Foster PG, Nye TM, Cox CJ, Embley TM.

Proc Biol Sci. 2012 Dec 22;279(1749):4870-9. doi: 10.1098/rspb.2012.1795. Epub 2012 Oct 24.

50.

Algae-produced Pfs25 elicits antibodies that inhibit malaria transmission.

Gregory JA, Li F, Tomosada LM, Cox CJ, Topol AB, Vinetz JM, Mayfield S.

PLoS One. 2012;7(5):e37179. doi: 10.1371/journal.pone.0037179. Epub 2012 May 16.

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