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Items: 13

1.

A novel sequencing-based vaginal health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis.

Bik EM, Bird SW, Bustamante JP, Leon LE, Nieto PA, Addae K, Alegría-Mera V, Bravo C, Bravo D, Cardenas JP, Carson GA, Caughey A, Covarrubias PC, Pérez-Donoso J, Gass G, Gupta SL, Harman K, Hongo DMB, Jiménez JC, Kraal L, Melis-Arcos F, Morales EH, Morton A, Navas CF, Nuñez H, Olivares E, Órdenes-Aenishanslins N, Ossandon FJ, Phan R, Pino R, Soto-Liebe K, Varas I, Vera-Wolf P, Walton NA, Almonacid DE, Goddard AD, Ugalde JA, Zneimer S, Richman J, Apte ZS.

PLoS One. 2019 May 1;14(5):e0215945. doi: 10.1371/journal.pone.0215945. eCollection 2019.

2.

Insights into the biology of acidophilic members of the Acidiferrobacteraceae family derived from comparative genomic analyses.

Issotta F, Moya-Beltrán A, Mena C, Covarrubias PC, Thyssen C, Bellenberg S, Sand W, Quatrini R, Vera M.

Res Microbiol. 2018 Dec;169(10):608-617. doi: 10.1016/j.resmic.2018.08.001. Epub 2018 Aug 22.

3.

Occurrence, integrity and functionality of AcaML1-like viruses infecting extreme acidophiles of the Acidithiobacillus species complex.

Covarrubias PC, Moya-Beltrán A, Atavales J, Moya-Flores F, Tapia PS, Acuña LG, Spinelli S, Quatrini R.

Res Microbiol. 2018 Dec;169(10):628-637. doi: 10.1016/j.resmic.2018.07.005. Epub 2018 Aug 20.

4.

Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366).

Castro M, Moya-Beltrán A, Covarrubias PC, Gonzalez M, Cardenas JP, Issotta F, Nuñez H, Acuña LG, Encina G, Holmes DS, Johnson DB, Quatrini R.

Stand Genomic Sci. 2017 Dec 15;12:77. doi: 10.1186/s40793-017-0282-y. eCollection 2017.

5.

Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon.

Nuñez H, Moya-Beltrán A, Covarrubias PC, Issotta F, Cárdenas JP, González M, Atavales J, Acuña LG, Johnson DB, Quatrini R.

Front Microbiol. 2017 Jan 19;8:30. doi: 10.3389/fmicb.2017.00030. eCollection 2017.

6.

Detection, identification and typing of Acidithiobacillus species and strains: a review.

Nuñez H, Covarrubias PC, Moya-Beltrán A, Issotta F, Atavales J, Acuña LG, Johnson DB, Quatrini R.

Res Microbiol. 2016 Sep;167(7):555-67. doi: 10.1016/j.resmic.2016.05.006. Epub 2016 Jun 8. Review.

PMID:
27288569
7.

Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile.

Issotta F, Galleguillos PA, Moya-Beltrán A, Davis-Belmar CS, Rautenbach G, Covarrubias PC, Acosta M, Ossandon FJ, Contador Y, Holmes DS, Marín-Eliantonio S, Quatrini R, Demergasso C.

Stand Genomic Sci. 2016 Feb 27;11:19. doi: 10.1186/s40793-016-0142-1. eCollection 2016.

8.

Draft Genome Sequence of the Nominated Type Strain of "Ferrovum myxofaciens," an Acidophilic, Iron-Oxidizing Betaproteobacterium.

Moya-Beltrán A, Cárdenas JP, Covarrubias PC, Issotta F, Ossandon FJ, Grail BM, Holmes DS, Quatrini R, Johnson DB.

Genome Announc. 2014 Aug 21;2(4). pii: e00834-14. doi: 10.1128/genomeA.00834-14.

9.

Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus.

Acuña LG, Cárdenas JP, Covarrubias PC, Haristoy JJ, Flores R, Nuñez H, Riadi G, Shmaryahu A, Valdés J, Dopson M, Rawlings DE, Banfield JF, Holmes DS, Quatrini R.

PLoS One. 2013 Nov 8;8(11):e78237. doi: 10.1371/journal.pone.0078237. eCollection 2013. Erratum in: PLoS One. 2015;10(3):e0122682.

10.

ICE Afe 1, an actively excising genetic element from the biomining bacterium Acidithiobacillus ferrooxidans.

Bustamante P, Covarrubias PC, Levicán G, Katz A, Tapia P, Holmes D, Quatrini R, Orellana O.

J Mol Microbiol Biotechnol. 2012;22(6):399-407. doi: 10.1159/000346669. Epub 2013 Mar 7.

11.

Complete genome sequence of temperate bacteriophage AcaML1 from the extreme acidophile Acidithiobacillus caldus ATCC 51756.

Tapia P, Flores FM, Covarrubias PC, Acuña LG, Holmes DS, Quatrini R.

J Virol. 2012 Nov;86(22):12452-3. doi: 10.1128/JVI.02261-12.

12.

The Escherichia coli BtuE protein functions as a resistance determinant against reactive oxygen species.

Arenas FA, Covarrubias PC, Sandoval JM, Pérez-Donoso JM, Imlay JA, Vásquez CC.

PLoS One. 2011 Jan 10;6(1):e15979. doi: 10.1371/journal.pone.0015979.

13.

Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidans.

Nieto PA, Covarrubias PC, Jedlicki E, Holmes DS, Quatrini R.

BMC Mol Biol. 2009 Jun 25;10:63. doi: 10.1186/1471-2199-10-63.

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