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Improved protocol for isolation of high-quality total RNA from different organs of Phaseolus vulgaris L.

Acosta-Maspons A, González-Lemes I, Covarrubias AA.

Biotechniques. 2019 Feb;66(2):96-98. doi: 10.2144/btn-2018-0129.


Phagocytosis of Leptospira by leukocytes from mice with different susceptibility to leptospirosis and possible role of chemokines.

Silva PLD, Lauretti-Ferreira F, Caldas de Lima M, Lima SS, Covarrubias AE, De Franco M, Carvalho E, Ho PL, da Costa RMA, Martins EAL, Da Silva JB.

BMC Microbiol. 2019 Jan 7;19(1):4. doi: 10.1186/s12866-018-1371-9.


AP39, a Modulator of Mitochondrial Bioenergetics, Reduces Antiangiogenic Response and Oxidative Stress in Hypoxia-Exposed Trophoblasts: Relevance for Preeclampsia Pathogenesis.

Covarrubias AE, Lecarpentier E, Lo A, Salahuddin S, Gray KJ, Karumanchi SA, Zsengellér ZK.

Am J Pathol. 2019 Jan;189(1):104-114. doi: 10.1016/j.ajpath.2018.09.007. Epub 2018 Oct 11.


Metal-binding polymorphism in late embryogenesis abundant protein AtLEA4-5, an intrinsically disordered protein.

French-Pacheco L, Cuevas-Velazquez CL, Rivillas-Acevedo L, Covarrubias AA, Amero C.

PeerJ. 2018 Jun 7;6:e4930. doi: 10.7717/peerj.4930. eCollection 2018.


Longterm Safety and Efficacy of Subcutaneous Abatacept in Patients with Rheumatoid Arthritis: 5-year Results from a Phase IIIb Trial.

Genovese MC, Pacheco-Tena C, Covarrubias A, Leon G, Mysler E, Keiserman M, Valente RM, Nash P, Simon-Campos JA, Box J, Legerton CW 3rd, Nasonov E, Durez P, Elegbe A, Wong R, Li X, Banerjee S, Alten R.

J Rheumatol. 2018 Aug;45(8):1085-1092. doi: 10.3899/jrheum.170344. Epub 2018 Apr 15.


A dicistronic precursor encoding miR398 and the legume-specific miR2119 coregulates CSD1 and ADH1 mRNAs in response to water deficit.

De la Rosa C, Covarrubias AA, Reyes JL.

Plant Cell Environ. 2019 Jan;42(1):133-144. doi: 10.1111/pce.13209. Epub 2018 Jun 21.


Gene Silencing of Argonaute5 Negatively Affects the Establishment of the Legume-Rhizobia Symbiosis.

Reyero-Saavedra MDR, Qiao Z, Sánchez-Correa MDS, Díaz-Pineda ME, Reyes JL, Covarrubias AA, Libault M, Valdés-López O.

Genes (Basel). 2017 Nov 28;8(12). pii: E352. doi: 10.3390/genes8120352.


Ketogenic Diet Reduces Midlife Mortality and Improves Memory in Aging Mice.

Newman JC, Covarrubias AJ, Zhao M, Yu X, Gut P, Ng CP, Huang Y, Haldar S, Verdin E.

Cell Metab. 2017 Sep 5;26(3):547-557.e8. doi: 10.1016/j.cmet.2017.08.004.


Group 4 late embryogenesis abundant proteins as a model to study intrinsically disordered proteins in plants.

Cuevas-Velazquez CL, Reyes JL, Covarrubias AA.

Plant Signal Behav. 2017 Jul 3;12(7):e1343777. doi: 10.1080/15592324.2017.1343777. Epub 2017 Jun 26.


Structural disorder in plant proteins: where plasticity meets sessility.

Covarrubias AA, Cuevas-Velazquez CL, Romero-Pérez PS, Rendón-Luna DF, Chater CCC.

Cell Mol Life Sci. 2017 Sep;74(17):3119-3147. doi: 10.1007/s00018-017-2557-2. Epub 2017 Jun 22. Review.


Papilionoidea (Insecta: Lepidoptera) type specimens at the Museo de Zoología "Alfonso L. Herrera" from Universidad Nacional Autónoma de México.

Luis-Martínez A, Covarrubias AA, Llorente-Bousquets J.

Zootaxa. 2017 Feb 15;4232(2):zootaxa.4232.2.1. doi: 10.11646/zootaxa.4232.2.1.


Insights into the function of the phasiRNA-triggering miR1514 in response to stress in legumes.

Sosa-Valencia G, Romero-Pérez PS, Palomar VM, Covarrubias AA, Reyes JL.

Plant Signal Behav. 2017 Mar 4;12(3):e1284724. doi: 10.1080/15592324.2017.1284724.


Identification of aminopyrimidine-sulfonamides as potent modulators of Wag31-mediated cell elongation in mycobacteria.

Singh V, Dhar N, Pató J, Kolly GS, Korduláková J, Forbak M, Evans JC, Székely R, Rybniker J, Palčeková Z, Zemanová J, Santi I, Signorino-Gelo F, Rodrigues L, Vocat A, Covarrubias AS, Rengifo MG, Johnsson K, Mowbray S, Buechler J, Delorme V, Brodin P, Knott GW, Aínsa JA, Warner DF, Kéri G, Mikušová K, McKinney JD, Cole ST, Mizrahi V, Hartkoorn RC.

Mol Microbiol. 2017 Jan;103(1):13-25. doi: 10.1111/mmi.13535. Epub 2016 Oct 29.


In vitro fertilization with cryopreserved spermatozoa in small pieces of gonad of the scallop Argopecten purpuratus (Lamarck, 1819).

Dupré E, Covarrubias A, Goldstein M, Guerrero A, Rojas H.

Cryobiology. 2016 Oct;73(2):216-20. doi: 10.1016/j.cryobiol.2016.07.008. Epub 2016 Jul 14.


Dynamic absorption and scattering of water and hydrogel during high-repetition-rate (>100 MHz) burst-mode ultrafast-pulse laser ablation.

Qian Z, Covarrubias A, Grindal AW, Akens MK, Lilge L, Marjoribanks RS.

Biomed Opt Express. 2016 May 23;7(6):2331-41. doi: 10.1364/BOE.7.002331. eCollection 2016 Jun 1.


The Unstructured N-terminal Region of Arabidopsis Group 4 Late Embryogenesis Abundant (LEA) Proteins Is Required for Folding and for Chaperone-like Activity under Water Deficit.

Cuevas-Velazquez CL, Saab-Rincón G, Reyes JL, Covarrubias AA.

J Biol Chem. 2016 May 13;291(20):10893-903. doi: 10.1074/jbc.M116.720318. Epub 2016 Mar 22.


Akt-mTORC1 signaling regulates Acly to integrate metabolic input to control of macrophage activation.

Covarrubias AJ, Aksoylar HI, Yu J, Snyder NW, Worth AJ, Iyer SS, Wang J, Ben-Sahra I, Byles V, Polynne-Stapornkul T, Espinosa EC, Lamming D, Manning BD, Zhang Y, Blair IA, Horng T.

Elife. 2016 Feb 19;5. pii: e11612. doi: 10.7554/eLife.11612.


The legume miR1514a modulates a NAC transcription factor transcript to trigger phasiRNA formation in response to drought.

Sosa-Valencia G, Palomar M, Covarrubias AA, Reyes JL.

J Exp Bot. 2017 Apr 1;68(8):2013-2026. doi: 10.1093/jxb/erw380.


Control of macrophage metabolism and activation by mTOR and Akt signaling.

Covarrubias AJ, Aksoylar HI, Horng T.

Semin Immunol. 2015 Aug;27(4):286-96. doi: 10.1016/j.smim.2015.08.001. Epub 2015 Sep 7. Review.


The Esg Gene Is Involved in Nicotine Sensitivity in Drosophila melanogaster.

Sanchez-Díaz I, Rosales-Bravo F, Reyes-Taboada JL, Covarrubias AA, Narvaez-Padilla V, Reynaud E.

PLoS One. 2015 Jul 29;10(7):e0133956. doi: 10.1371/journal.pone.0133956. eCollection 2015.


Predictors of postherpetic neuralgia in patients with herpes zoster: a pooled analysis of prospective cohort studies from North and Latin America and Asia.

Kawai K, Rampakakis E, Tsai TF, Cheong HJ, Dhitavat J, Covarrubias AO, Yang L, Cashat-Cruz M, Monsanto H, Johnson K, Sampalis JS, Acosta CJ.

Int J Infect Dis. 2015 May;34:126-31. doi: 10.1016/j.ijid.2015.03.022. Epub 2015 Apr 2.


The absence of the embryo in the pseudopregnant uterus alters the deposition of some ECM molecules during decidualization in mice.

Covarrubias AE, Barrence FC, Zorn TM.

Connect Tissue Res. 2015 Jun;56(3):253-63. doi: 10.3109/03008207.2015.1023432. Epub 2015 Mar 31.


The Wnt1 ligand/Frizzled 3 receptor system plays a regulatory role in the achievement of the 'in vitro' capacitation and subsequent 'in vitro' acrosome exocytosis of porcine spermatozoa.

Covarrubias AA, Yeste M, Salazar E, Ramírez-Reveco A, Rodriguez Gil JE, Concha II.

Andrology. 2015 Mar;3(2):357-67. doi: 10.1111/andr.12011. Epub 2015 Feb 5.


Endothelium trans differentiated from Wharton's jelly mesenchymal cells promote tissue regeneration: potential role of soluble pro-angiogenic factors.

Aguilera V, Briceño L, Contreras H, Lamperti L, Sepúlveda E, Díaz-Perez F, León M, Veas C, Maura R, Toledo JR, Fernández P, Covarrubias A, Zuñiga FA, Radojkovic C, Escudero C, Aguayo C.

PLoS One. 2014 Nov 20;9(11):e111025. doi: 10.1371/journal.pone.0111025. eCollection 2014.


Presence and function of dopamine transporter (DAT) in stallion sperm: dopamine modulates sperm motility and acrosomal integrity.

Urra JA, Villaroel-Espíndola F, Covarrubias AA, Rodríguez-Gil JE, Ramírez-Reveco A, Concha II.

PLoS One. 2014 Nov 17;9(11):e112834. doi: 10.1371/journal.pone.0112834. eCollection 2014.


Dissecting the cryoprotection mechanisms for dehydrins.

Cuevas-Velazquez CL, Rendón-Luna DF, Covarrubias AA.

Front Plant Sci. 2014 Oct 29;5:583. doi: 10.3389/fpls.2014.00583. eCollection 2014.


A group 6 late embryogenesis abundant protein from common bean is a disordered protein with extended helical structure and oligomer-forming properties.

Rivera-Najera LY, Saab-Rincón G, Battaglia M, Amero C, Pulido NO, García-Hernández E, Solórzano RM, Reyes JL, Covarrubias AA.

J Biol Chem. 2014 Nov 14;289(46):31995-2009. doi: 10.1074/jbc.M114.583369. Epub 2014 Sep 30.


IL-6 strikes a balance in metabolic inflammation.

Covarrubias AJ, Horng T.

Cell Metab. 2014 Jun 3;19(6):898-9. doi: 10.1016/j.cmet.2014.05.009.


Energy-partition diagnostic for measuring time-resolved scattering and absorption in burst-mode laser ablation.

Qian Z, Schoenly JE, Covarrubias A, Lilge L, Marjoribanks RS.

Rev Sci Instrum. 2014 Mar;85(3):033101. doi: 10.1063/1.4866658.


Subcutaneous abatacept for the treatment of rheumatoid arthritis: longterm data from the ACQUIRE trial.

Genovese MC, Tena CP, Covarrubias A, Leon G, Mysler E, Keiserman M, Valente R, Nash P, Simon-Campos JA, Box J, Legerton CW 3rd, Nasonov E, Durez P, Delaet I, Teng J, Alten R.

J Rheumatol. 2014 Apr;41(4):629-39. doi: 10.3899/jrheum.130112. Epub 2014 Mar 1.


Pulsetrain-burst mode, ultrafast-laser interactions with 3D viable cell cultures as a model for soft biological tissues.

Qian Z, Mordovanakis A, Schoenly JE, Covarrubias A, Feng Y, Lilge L, Marjoribanks RS.

Biomed Opt Express. 2013 Dec 13;5(1):208-22. doi: 10.1364/BOE.5.000208. eCollection 2013 Dec 13.


The TSC-mTOR pathway regulates macrophage polarization.

Byles V, Covarrubias AJ, Ben-Sahra I, Lamming DW, Sabatini DM, Manning BD, Horng T.

Nat Commun. 2013;4:2834. doi: 10.1038/ncomms3834.


Long-term type 1 diabetes impairs decidualization and extracellular matrix remodeling during early embryonic development in mice.

Favaro RR, Salgado RM, Covarrubias AC, Bruni F, Lima C, Fortes ZB, Zorn TM.

Placenta. 2013 Dec;34(12):1128-35. doi: 10.1016/j.placenta.2013.09.012. Epub 2013 Sep 30.


Leaf water dynamics of Arabidopsis thaliana monitored in-vivo using terahertz time-domain spectroscopy.

Castro-Camus E, Palomar M, Covarrubias AA.

Sci Rep. 2013 Oct 9;3:2910. doi: 10.1038/srep02910.


Determining abundance of microRNAs and other small RNAs in legumes.

Contreras-Cubas C, Covarrubias AA, Reyes JL.

Methods Mol Biol. 2013;1069:81-92. doi: 10.1007/978-1-62703-613-9_7.


Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains.

Campos F, Cuevas-Velazquez C, Fares MA, Reyes JL, Covarrubias AA.

Mol Genet Genomics. 2013 Oct;288(10):503-17. doi: 10.1007/s00438-013-0768-2. Epub 2013 Jul 17.


ROS sets the stage for macrophage differentiation.

Covarrubias A, Byles V, Horng T.

Cell Res. 2013 Aug;23(8):984-5. doi: 10.1038/cr.2013.88. Epub 2013 Jul 9.


Late Embryogenesis Abundant (LEA) proteins in legumes.

Battaglia M, Covarrubias AA.

Front Plant Sci. 2013 Jun 25;4:190. doi: 10.3389/fpls.2013.00190. eCollection 2013.


Muscle glycogen synthase isoform is responsible for testicular glycogen synthesis: glycogen overproduction induces apoptosis in male germ cells.

Villarroel-Espíndola F, Maldonado R, Mancilla H, vander Stelt K, Acuña AI, Covarrubias A, López C, Angulo C, Castro MA, Slebe JC, Durán J, García-Rocha M, Guinovart JJ, Concha II.

J Cell Biochem. 2013 Jul;114(7):1653-64. doi: 10.1002/jcb.24507.


Estradiol induces transcriptional and posttranscriptional modifications in versican expression in the mouse uterus.

Salgado RM, Covarrubias AC, Favaro RR, Serrano-Nascimento C, Nunes MT, Zorn TM.

J Mol Histol. 2013 Apr;44(2):221-9. doi: 10.1007/s10735-012-9476-1. Epub 2012 Dec 28.


Non-coding RNAs in the plant response to abiotic stress.

Contreras-Cubas C, Palomar M, Arteaga-Vázquez M, Reyes JL, Covarrubias AA.

Planta. 2012 Oct;236(4):943-58. Epub 2012 Jul 4. Review.


Physiological traits related to terminal drought resistance in common bean (Phaseolus vulgaris L.).

Rosales MA, Cuellar-Ortiz SM, de la Paz Arrieta-Montiel M, Acosta-Gallegos J, Covarrubias AA.

J Sci Food Agric. 2013 Jan;93(2):324-31. doi: 10.1002/jsfa.5761. Epub 2012 Jul 2.


Physiological analysis of common bean (Phaseolus vulgaris L.) cultivars uncovers characteristics related to terminal drought resistance.

Rosales MA, Ocampo E, Rodríguez-Valentín R, Olvera-Carrillo Y, Acosta-Gallegos J, Covarrubias AA.

Plant Physiol Biochem. 2012 Jul;56:24-34. doi: 10.1016/j.plaphy.2012.04.007. Epub 2012 Apr 21.


Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.

Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F.

BMC Genomics. 2012 Mar 6;13:83. doi: 10.1186/1471-2164-13-83.


Induction of TNF-alfa and CXCL-2 mRNAs in different organs of mice infected with pathogenic Leptospira.

da Silva JB, Carvalho E, Covarrubias AE, Ching AT, Mattaraia VG, Paiva D, de Franco M, Fávaro RD, Pereira MM, Vasconcellos S, Zorn TT, Ho PL, Martins EA.

Microb Pathog. 2012 Apr;52(4):206-16. doi: 10.1016/j.micpath.2012.01.002. Epub 2012 Feb 8.


The Phaseolus vulgaris miR159a precursor encodes a second differentially expressed microRNA.

Contreras-Cubas C, Rabanal FA, Arenas-Huertero C, Ortiz MA, Covarrubias AA, Reyes JL.

Plant Mol Biol. 2012 Sep;80(1):103-15. doi: 10.1007/s11103-011-9847-0. Epub 2011 Nov 15.


Variation in salinity tolerance of four lowland genotypes of quinoa (Chenopodium quinoa Willd.) as assessed by growth, physiological traits, and sodium transporter gene expression.

Ruiz-Carrasco K, Antognoni F, Coulibaly AK, Lizardi S, Covarrubias A, Martínez EA, Molina-Montenegro MA, Biondi S, Zurita-Silva A.

Plant Physiol Biochem. 2011 Nov;49(11):1333-41. doi: 10.1016/j.plaphy.2011.08.005. Epub 2011 Aug 23.


A general method of protein purification for recombinant unstructured non-acidic proteins.

Campos F, Guillén G, Reyes JL, Covarrubias AA.

Protein Expr Purif. 2011 Nov;80(1):47-51. doi: 10.1016/j.pep.2011.06.007. Epub 2011 Jun 25.


Subcutaneous abatacept versus intravenous abatacept: a phase IIIb noninferiority study in patients with an inadequate response to methotrexate.

Genovese MC, Covarrubias A, Leon G, Mysler E, Keiserman M, Valente R, Nash P, Simon-Campos JA, Porawska W, Box J, Legerton C 3rd, Nasonov E, Durez P, Aranda R, Pappu R, Delaet I, Teng J, Alten R.

Arthritis Rheum. 2011 Oct;63(10):2854-64. doi: 10.1002/art.30463.


Expression and β-glucan binding properties of Scots pine (Pinus sylvestris L.) antimicrobial protein (Sp-AMP).

Sooriyaarachchi S, Jaber E, Covarrubias AS, Ubhayasekera W, Asiegbu FO, Mowbray SL.

Plant Mol Biol. 2011 Sep;77(1-2):33-45. doi: 10.1007/s11103-011-9791-z. Epub 2011 May 17.


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