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Erratum for Baddal et al., Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk.

Baddal B, Muzzi A, Censini S, Calogero RA, Torricelli G, Guidotti S, Taddei AR, Covacci A, Pizza M, Rappuoli R, Soriani M, Pezzicoli A.

mBio. 2016 Apr 12;7(2):e00373-16. doi: 10.1128/mBio.00373-16. No abstract available.


Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk.

Baddal B, Muzzi A, Censini S, Calogero RA, Torricelli G, Guidotti S, Taddei AR, Covacci A, Pizza M, Rappuoli R, Soriani M, Pezzicoli A.

mBio. 2015 Nov 17;6(6):e01765-15. doi: 10.1128/mBio.01765-15. Erratum in: MBio. 2016;7(2). pii: e00373-16. doi: 10.1128/mBio.00373-16.


Echoes of a distant past: The cag pathogenicity island of Helicobacter pylori.

Pacchiani N, Censini S, Buti L, Covacci A.

Cold Spring Harb Perspect Med. 2013 Nov 1;3(11). pii: a010355. doi: 10.1101/cshperspect.a010355. Review.


Helicobacter pylori cytotoxin-associated gene A (CagA) subverts the apoptosis-stimulating protein of p53 (ASPP2) tumor suppressor pathway of the host.

Buti L, Spooner E, Van der Veen AG, Rappuoli R, Covacci A, Ploegh HL.

Proc Natl Acad Sci U S A. 2011 May 31;108(22):9238-43. doi: 10.1073/pnas.1106200108. Epub 2011 May 11.


Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.

Budroni S, Siena E, Dunning Hotopp JC, Seib KL, Serruto D, Nofroni C, Comanducci M, Riley DR, Daugherty SC, Angiuoli SV, Covacci A, Pizza M, Rappuoli R, Moxon ER, Tettelin H, Medini D.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4494-9. doi: 10.1073/pnas.1019751108. Epub 2011 Feb 28.


The cag Pathogenicity Island.

Stein M, Rappuoli R, Covacci A.

In: Mobley HLT, Mendz GL, Hazell SL, editors. Helicobacter pylori: Physiology and Genetics. Washington (DC): ASM Press; 2001. Chapter 31.


Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.

Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V.

Genome Biol. 2010;11(10):R107. doi: 10.1186/gb-2010-11-10-r107. Epub 2010 Oct 29. Erratum in: Genome Biol. 2011;12(10):140.


Supramolecular organization of the repetitive backbone unit of the Streptococcus pneumoniae pilus.

Spraggon G, Koesema E, Scarselli M, Malito E, Biagini M, Norais N, Emolo C, Barocchi MA, Giusti F, Hilleringmann M, Rappuoli R, Lesley S, Covacci A, Masignani V, Ferlenghi I.

PLoS One. 2010 Jun 15;5(6):e10919. doi: 10.1371/journal.pone.0010919.


Visualizing bacterial surfaces in real time.

Covacci A, Rappuoli R.

Microb Biotechnol. 2009 Mar;2(2):146-7. doi: 10.1111/j.1751-7915.2009.00090_14.x. No abstract available.


Pilus operon evolution in Streptococcus pneumoniae is driven by positive selection and recombination.

Muzzi A, Moschioni M, Covacci A, Rappuoli R, Donati C.

PLoS One. 2008;3(11):e3660. doi: 10.1371/journal.pone.0003660. Epub 2008 Nov 6.


The complete genome sequence of Helicobacter pylori strain G27.

Baltrus DA, Amieva MR, Covacci A, Lowe TM, Merrell DS, Ottemann KM, Stein M, Salama NR, Guillemin K.

J Bacteriol. 2009 Jan;191(1):447-8. doi: 10.1128/JB.01416-08. Epub 2008 Oct 24.


A second pilus type in Streptococcus pneumoniae is prevalent in emerging serotypes and mediates adhesion to host cells.

Bagnoli F, Moschioni M, Donati C, Dimitrovska V, Ferlenghi I, Facciotti C, Muzzi A, Giusti F, Emolo C, Sinisi A, Hilleringmann M, Pansegrau W, Censini S, Rappuoli R, Covacci A, Masignani V, Barocchi MA.

J Bacteriol. 2008 Aug;190(15):5480-92. doi: 10.1128/JB.00384-08. Epub 2008 May 30.


Pneumococcal pili are composed of protofilaments exposing adhesive clusters of Rrg A.

Hilleringmann M, Giusti F, Baudner BC, Masignani V, Covacci A, Rappuoli R, Barocchi MA, Ferlenghi I.

PLoS Pathog. 2008 Mar 21;4(3):e1000026. doi: 10.1371/journal.ppat.1000026.


Pathogenomics: an updated European Research Agenda.

Demuth A, Aharonowitz Y, Bachmann TT, Blum-Oehler G, Buchrieser C, Covacci A, Dobrindt U, Emödy L, van der Ende A, Ewbank J, Fernández LA, Frosch M, García-Del Portillo F, Gilmore MS, Glaser P, Goebel W, Hasnain SE, Heesemann J, Islam K, Korhonen T, Maiden M, Meyer TF, Montecucco C, Oswald E, Parkhill J, Pucciarelli MG, Ron E, Svanborg C, Uhlin BE, Wai SN, Wehland J, Hacker J.

Infect Genet Evol. 2008 May;8(3):386-93. doi: 10.1016/j.meegid.2008.01.005. Epub 2008 Jan 18. Review.


Streptococcus pneumoniae contains 3 rlrA pilus variants that are clonally related.

Moschioni M, Donati C, Muzzi A, Masignani V, Censini S, Hanage WP, Bishop CJ, Reis JN, Normark S, Henriques-Normark B, Covacci A, Rappuoli R, Barocchi MA.

J Infect Dis. 2008 Mar 15;197(6):888-96. doi: 10.1086/528375.


Coxsackie B4 virus infection of beta cells and natural killer cell insulitis in recent-onset type 1 diabetic patients.

Dotta F, Censini S, van Halteren AG, Marselli L, Masini M, Dionisi S, Mosca F, Boggi U, Muda AO, Del Prato S, Elliott JF, Covacci A, Rappuoli R, Roep BO, Marchetti P.

Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):5115-20. Epub 2007 Mar 14.


Streptococcus pneumoniae pilus subunits protect mice against lethal challenge.

Gianfaldoni C, Censini S, Hilleringmann M, Moschioni M, Facciotti C, Pansegrau W, Masignani V, Covacci A, Rappuoli R, Barocchi MA, Ruggiero P.

Infect Immun. 2007 Feb;75(2):1059-62. Epub 2006 Dec 4.


Inhibitors of Helicobacter pylori ATPase Cagalpha block CagA transport and cag virulence.

Hilleringmann M, Pansegrau W, Doyle M, Kaufman S, MacKichan ML, Gianfaldoni C, Ruggiero P, Covacci A.

Microbiology. 2006 Oct;152(Pt 10):2919-2930. doi: 10.1099/mic.0.28984-0.


Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach.

Mora M, Donati C, Medini D, Covacci A, Rappuoli R.

Curr Opin Microbiol. 2006 Oct;9(5):532-6. Epub 2006 Aug 4. Review.


Frequency and localization of mutations in the 106 exons of the RYR1 gene in 50 individuals with malignant hyperthermia.

Galli L, Orrico A, Lorenzini S, Censini S, Falciani M, Covacci A, Tegazzin V, Sorrentino V.

Hum Mutat. 2006 Aug;27(8):830.


Streptococcus pneumoniae induces mast cell degranulation.

Barbuti G, Moschioni M, Censini S, Covacci A, Montecucco C, Montemurro P.

Int J Med Microbiol. 2006 Aug;296(4-5):325-9. Epub 2006 Mar 10.


A pneumococcal pilus influences virulence and host inflammatory responses.

Barocchi MA, Ries J, Zogaj X, Hemsley C, Albiger B, Kanth A, Dahlberg S, Fernebro J, Moschioni M, Masignani V, Hultenby K, Taddei AR, Beiter K, Wartha F, von Euler A, Covacci A, Holden DW, Normark S, Rappuoli R, Henriques-Normark B.

Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2857-62. Epub 2006 Feb 15.


Helicobacter pylori CagA induces a transition from polarized to invasive phenotypes in MDCK cells.

Bagnoli F, Buti L, Tompkins L, Covacci A, Amieva MR.

Proc Natl Acad Sci U S A. 2005 Nov 8;102(45):16339-44. Epub 2005 Oct 28.


Cloning, expression, purification, and characterization of Streptococcus pneumoniae IgA1 protease.

Romanello V, Marcacci M, Dal Molin F, Moschioni M, Censini S, Covacci A, Baritussio AG, Montecucco C, Tonello F.

Protein Expr Purif. 2006 Jan;45(1):142-9. Epub 2005 Aug 11.


LuxS is required for persistent pneumococcal carriage and expression of virulence and biosynthesis genes.

Joyce EA, Kawale A, Censini S, Kim CC, Covacci A, Falkow S.

Infect Immun. 2004 May;72(5):2964-75.


Phylogeny of the SARS coronavirus.

Eickmann M, Becker S, Klenk HD, Doerr HW, Stadler K, Censini S, Guidotti S, Masignani V, Scarselli M, Mora M, Donati C, Han JH, Song HC, Abrignani S, Covacci A, Rappuoli R.

Science. 2003 Nov 28;302(5650):1504-5. No abstract available.


Reverse vaccinology and genomics.

Rappuoli R, Covacci A.

Science. 2003 Oct 24;302(5645):602.


Disruption of the epithelial apical-junctional complex by Helicobacter pylori CagA.

Amieva MR, Vogelmann R, Covacci A, Tompkins LS, Nelson WJ, Falkow S.

Science. 2003 May 30;300(5624):1430-4.


Helicobacter pylori: after the genomes, back to biology.

Covacci A, Rappuoli R.

J Exp Med. 2003 Apr 7;197(7):807-11. Epub 2003 Mar 31. No abstract available.


A human short-chain dehydrogenase/reductase gene: structure, chromosomal localization, tissue expression and subcellular localization of its product.

Pellegrini S, Censini S, Guidotti S, Iacopetti P, Rocchi M, Bianchi M, Covacci A, Gabrielli F.

Biochim Biophys Acta. 2002 Apr 12;1574(3):215-22.


c-Src/Lyn kinases activate Helicobacter pylori CagA through tyrosine phosphorylation of the EPIYA motifs.

Stein M, Bagnoli F, Halenbeck R, Rappuoli R, Fantl WJ, Covacci A.

Mol Microbiol. 2002 Feb;43(4):971-80.


Helicobacter pylori pathogenicity: the bacterium and the host.

Covacci A.

Eur J Gastroenterol Hepatol. 2000 Sep;12(9):1050-2. No abstract available.


"Cervia Working Group Report": guidelines on the diagnosis and treatment of Helicobacter pylori infection.

Caselli M, Parente F, Palli D, Covacci A, Alvisi V, Gasbarrini G, Bianchi Porro G; Cervia Working Group.

Dig Liver Dis. 2001 Jan-Feb;33(1):75-80.


The design of vaccines against Helicobacter pylori and their development.

Del Giudice G, Covacci A, Telford JL, Montecucco C, Rappuoli R.

Annu Rev Immunol. 2001;19:523-63. Review.


Cellular responses induced after contact with Helicobacter pylori.

Censini S, Stein M, Covacci A.

Curr Opin Microbiol. 2001 Feb;4(1):41-6. Review.


Biological marker for diseases sustained by Helicobacter pylori infection.

Covacci A.

Dig Liver Dis. 2000 Jun-Jul;32(5):384-5. No abstract available.


Metronidazole resistance in Helicobacter pylori.

Rappuoli R, Pizza M, Covacci A.

Clin Infect Dis. 1999 Apr;28(4):937-9. No abstract available.


Tyrosine-phosphorylated bacterial proteins: Trojan horses for the host cell.

Covacci A, Rappuoli R.

J Exp Med. 2000 Feb 21;191(4):587-92. Review. No abstract available.


Seropositivity to Helicobacter pylori and CagA protein in schoolchildren of different ages living in urban and rural areas in southern Estonia.

Vorobjova T, Grünberg H, Oona M, Maaroos HI, Nilsson I, Wadström T, Covacci A, Uibo R.

Eur J Gastroenterol Hepatol. 2000 Jan;12(1):97-101.


Tyrosine phosphorylation of the Helicobacter pylori CagA antigen after cag-driven host cell translocation.

Stein M, Rappuoli R, Covacci A.

Proc Natl Acad Sci U S A. 2000 Feb 1;97(3):1263-8.


Seroprevalence of cytotoxin-associated gene A positive Helicobacter pylori strains in Changle, an area with very high prevalence of gastric cancer in south China.

Wong BC, Lam SK, Ching CK, Hu WH, Ong LY, Chen BW, Gao Z, Chen JS, Jiang XW, Hou XH, Lu JY, Wang WH, Ho J, Yuen ST, Lai KC, Kwok E, Hui WM, Covacci A.

Aliment Pharmacol Ther. 1999 Oct;13(10):1295-302.


Activation of activator protein 1 and stress response kinases in epithelial cells colonized by Helicobacter pylori encoding the cag pathogenicity island.

Naumann M, Wessler S, Bartsch C, Wieland B, Covacci A, Haas R, Meyer TF.

J Biol Chem. 1999 Oct 29;274(44):31655-62.


Patients younger than 40 years with gastric carcinoma: Helicobacter pylori genotype and associated gastritis phenotype.

Rugge M, Busatto G, Cassaro M, Shiao YH, Russo V, Leandro G, Avellini C, Fabiano A, Sidoni A, Covacci A.

Cancer. 1999 Jun 15;85(12):2506-11.


Helicobacter pylori virulence and genetic geography.

Covacci A, Telford JL, Del Giudice G, Parsonnet J, Rappuoli R.

Science. 1999 May 21;284(5418):1328-33. Review.


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