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Identification of selection signatures involved in performance traits in a paternal broiler line.

Almeida OAC, Moreira GCM, Rezende FM, Boschiero C, de Oliveira Peixoto J, Ibelli AMG, Ledur MC, de Novais FJ, Coutinho LL.

BMC Genomics. 2019 Jun 3;20(1):449. doi: 10.1186/s12864-019-5811-1.


Mutation dynamics of CpG dinucleotides during a recent event of vertebrate diversification.

Pértille F, Da Silva VH, Johansson AM, Lindström T, Wright D, Coutinho LL, Jensen P, Guerrero-Bosagna C.

Epigenetics. 2019 Jul;14(7):685-707. doi: 10.1080/15592294.2019.1609868. Epub 2019 May 9.


Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.

Diniz WJS, Mazzoni G, Coutinho LL, Banerjee P, Geistlinger L, Cesar ASM, Bertolini F, Afonso J, de Oliveira PSN, Tizioto PC, Kadarmideen HN, Regitano LCA.

Front Genet. 2019 Mar 13;10:210. doi: 10.3389/fgene.2019.00210. eCollection 2019.


Genome-wide association study for milk production traits in a Brazilian Holstein population.

Iung LHS, Petrini J, Ramírez-Díaz J, Salvian M, Rovadoscki GA, Pilonetto F, Dauria BD, Machado PF, Coutinho LL, Wiggans GR, Mourão GB.

J Dairy Sci. 2019 Jun;102(6):5305-5314. doi: 10.3168/jds.2018-14811. Epub 2019 Mar 21.


Impact of exposure time to harsh environments on physiology, mortality, and thermal comfort of day-old chickens in a simulated condition of transport.

Vieira FMC, Groff PM, Silva IJO, Nazareno AC, Godoy TF, Coutinho LL, Vieira AMC, Silva-Miranda KO.

Int J Biometeorol. 2019 Jun;63(6):777-785. doi: 10.1007/s00484-019-01691-4. Epub 2019 Feb 22.


RNA-Seq transcriptome analysis shows anti-tumor actions of melatonin in a breast cancer xenograft model.

Jardim-Perassi BV, Alexandre PA, Sonehara NM, de Paula-Junior R, Reis Júnior O, Fukumasu H, Chammas R, Coutinho LL, Zuccari DAPC.

Sci Rep. 2019 Jan 30;9(1):966. doi: 10.1038/s41598-018-37413-w.


Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle.

Silva-Vignato B, Coutinho LL, Poleti MD, Cesar ASM, Moncau CT, Regitano LCA, Balieiro JCC.

BMC Genomics. 2019 Jan 10;20(1):32. doi: 10.1186/s12864-018-5345-y.


Quantitative trait loci for morphometric and mineral composition traits of the tibia bone in a broiler × layer cross.

Faveri JC, Pinto LFB, de Camargo GMF, Pedrosa VB, Peixoto JO, Marchesi JAP, Kawski VL, Coutinho LL, Ledur MC.

Animal. 2019 Jan 7:1-7. doi: 10.1017/S175173111800335X. [Epub ahead of print]


MiRNAs differentially expressed in skeletal muscle of animals with divergent estimated breeding values for beef tenderness.

Kappeler BIG, Regitano LCA, Poleti MD, Cesar ASM, Moreira GCM, Gasparin G, Coutinho LL.

BMC Mol Biol. 2019 Jan 3;20(1):1. doi: 10.1186/s12867-018-0118-3.


An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle.

De Oliveira PSN, Coutinho LL, Tizioto PC, Cesar ASM, de Oliveira GB, Diniz WJDS, De Lima AO, Reecy JM, Mourão GB, Zerlotini A, Regitano LCA.

Sci Rep. 2018 Nov 20;8(1):17072. doi: 10.1038/s41598-018-35315-5.


MicroRNA expression profiles discriminate childhood T- from B-acute lymphoblastic leukemia.

Almeida RS, Costa E Silva M, Coutinho LL, Garcia Gomes R, Pedrosa F, Massaro JD, Donadi EA, Lucena-Silva N.

Hematol Oncol. 2019 Feb;37(1):103-112. doi: 10.1002/hon.2567. Epub 2018 Nov 27.


Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken.

Moreira GCM, Boschiero C, Cesar ASM, Reecy JM, Godoy TF, Pértille F, Ledur MC, Moura ASAMT, Garrick DJ, Coutinho LL.

Sci Rep. 2018 Nov 1;8(1):16222. doi: 10.1038/s41598-018-34364-0.


Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle.

Gonçalves TM, de Almeida Regitano LC, Koltes JE, Cesar ASM, da Silva Andrade SC, Mourão GB, Gasparin G, Moreira GCM, Fritz-Waters E, Reecy JM, Coutinho LL.

Front Genet. 2018 Oct 5;9:441. doi: 10.3389/fgene.2018.00441. eCollection 2018.


Whole transcriptome analysis of the pectoralis major muscle reveals molecular mechanisms involved with white striping in broiler chickens.

Marchesi JAP, Ibelli AMG, Peixoto JO, Cantão ME, Pandolfi JRC, Marciano CMM, Zanella R, Settles ML, Coutinho LL, Ledur MC.

Poult Sci. 2019 Feb 1;98(2):590-601. doi: 10.3382/ps/pey429.


Data from proteomic analysis of bovine Longissimus dorsi muscle associated with intramuscular fat content.

Poleti MD, Regitano LCA, Souza GHMF, Cesar ASM, Simas RC, Silva-Vignato B, Oliveira GB, Andrade SCS, Cameron LC, Coutinho LL.

Data Brief. 2018 Jun 9;19:1314-1317. doi: 10.1016/j.dib.2018.06.004. eCollection 2018 Aug.


A comprehensive manually-curated compendium of bovine transcription factors.

de Souza MM, Zerlotini A, Geistlinger L, Tizioto PC, Taylor JF, Rocha MIP, Diniz WJS, Coutinho LL, Regitano LCA.

Sci Rep. 2018 Sep 13;8(1):13747. doi: 10.1038/s41598-018-32146-2.


Low-intensity resistance training with partial blood flow restriction and high-intensity resistance training induce similar changes in skeletal muscle transcriptome in elderly humans.

Vechin FC, Libardi CA, Conceição MS, Damas F, Cavaglieri CR, Chacon-Mikahil MPT, Coutinho LL, Andrade SCS, Neves MT Jr, Roschel H, Tricoli V, Baptista IL, Moriscot AA, Ugrinowitsch C.

Appl Physiol Nutr Metab. 2019 Feb;44(2):216-220. doi: 10.1139/apnm-2018-0146. Epub 2018 Jul 12.


Transcriptome changes in muscle of Nellore cows submitted to recovery weight gain under grazing condition.

Fausto DA, Ferraz ALJ, Delgado EF, Andrade SCS, Coutinho LL, Feijó GLD.

Animal. 2019 Feb;13(2):333-340. doi: 10.1017/S1751731118001490. Epub 2018 Jul 9.


Single nucleotide polymorphisms in the growth hormone and IGF type-1 (IGF1) genes associated with carcass traits in Santa Ines sheep.

Meira AN, Montenegro H, Coutinho LL, Mourão GB, Azevedo HC, Muniz EN, Machado AL, Sousa-Jr LP, Pedrosa VB, Pinto LFB.

Animal. 2019 Mar;13(3):460-468. doi: 10.1017/S1751731118001362. Epub 2018 Jul 6.


Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits.

Cesar ASM, Regitano LCA, Reecy JM, Poleti MD, Oliveira PSN, de Oliveira GB, Moreira GCM, Mudadu MA, Tizioto PC, Koltes JE, Fritz-Waters E, Kramer L, Garrick D, Beiki H, Geistlinger L, Mourão GB, Zerlotini A, Coutinho LL.

BMC Genomics. 2018 Jun 27;19(1):499. doi: 10.1186/s12864-018-4871-y.


Linkage disequilibrium in Brazilian Santa Inês breed, Ovis aries.

Alvarenga AB, Rovadoscki GA, Petrini J, Coutinho LL, Morota G, Spangler ML, Pinto LFB, Carvalho GGP, Mourão GB.

Sci Rep. 2018 Jun 11;8(1):8851. doi: 10.1038/s41598-018-27259-7.


Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep.

Rovadoscki GA, Pertile SFN, Alvarenga AB, Cesar ASM, Pértille F, Petrini J, Franzo V, Soares WVB, Morota G, Spangler ML, Pinto LFB, Carvalho GGP, Lanna DPD, Coutinho LL, Mourão GB.

BMC Genomics. 2018 May 21;19(1):375. doi: 10.1186/s12864-018-4777-8.


A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens.

Moreira GCM, Boschiero C, Cesar ASM, Reecy JM, Godoy TF, Trevisoli PA, Cantão ME, Ledur MC, Ibelli AMG, Peixoto JO, Moura ASAMT, Garrick D, Coutinho LL.

BMC Genomics. 2018 May 21;19(1):374. doi: 10.1186/s12864-018-4779-6.


Next-Generation Sequencing of the Complete Mitochondrial Genome of the Endangered Species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and Mitogenomic Phylogeny Focusing on the Callitrichidae Family.

de Freitas PD, Mendez FL, Chávez-Congrains K, Galetti PM Jr, Coutinho LL, Pissinatti A, Bustamante CD.

G3 (Bethesda). 2018 May 31;8(6):1985-1991. doi: 10.1534/g3.118.200153.


Longissimus dorsi muscle label-free quantitative proteomic reveals biological mechanisms associated with intramuscular fat deposition.

Poleti MD, Regitano LCA, Souza GHMF, Cesar ASM, Simas RC, Silva-Vignato B, Oliveira GB, Andrade SCS, Cameron LC, Coutinho LL.

J Proteomics. 2018 May 15;179:30-41. doi: 10.1016/j.jprot.2018.02.028. Epub 2018 Mar 3.


Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle.

Oliveira GB, Regitano LCA, Cesar ASM, Reecy JM, Degaki KY, Poleti MD, Felício AM, Koltes JE, Coutinho LL.

BMC Genomics. 2018 Feb 7;19(1):126. doi: 10.1186/s12864-018-4514-3.


Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines.

Boschiero C, Moreira GCM, Gheyas AA, Godoy TF, Gasparin G, Mariani PDSC, Paduan M, Cesar ASM, Ledur MC, Coutinho LL.

BMC Genomics. 2018 Jan 25;19(1):83. doi: 10.1186/s12864-018-4444-0.


Widespread modulation of gene expression by copy number variation in skeletal muscle.

Geistlinger L, da Silva VH, Cesar ASM, Tizioto PC, Waldron L, Zimmer R, Regitano LCA, Coutinho LL.

Sci Rep. 2018 Jan 23;8(1):1399. doi: 10.1038/s41598-018-19782-4.


Investigation of mechanisms involved in regulation of progesterone catabolism using an overfed versus underfed ewe-lamb model.

Mattos FCSZ, Canavessi AMO, Wiltbank MC, Bastos MR, Lemes AP, Mourão GB, Susin I, Coutinho LL, Sartori R.

J Anim Sci. 2017 Dec;95(12):5537-5546. doi: 10.2527/jas2017.1719.


Impact of hormonal modulation at proestrus on ovarian responses and uterine gene expression of suckled anestrous beef cows.

Sá Filho MF, Gonella-Diaza AM, Sponchiado M, Mendanha MF, Pugliesi G, Ramos RDS, Andrade SCDS, Gasparin G, Coutinho LL, Goissis MD, Mesquita FS, Baruselli PS, Binelli M.

J Anim Sci Biotechnol. 2017 Nov 1;8:79. doi: 10.1186/s40104-017-0211-3. eCollection 2017.


Relationship of runs of homozygosity with adaptive and production traits in a paternal broiler line.

Marchesi JAP, Buzanskas ME, Cantão ME, Ibelli AMG, Peixoto JO, Joaquim LB, Moreira GCM, Godoy TF, Sbardella AP, Figueiredo EAP, Coutinho LL, Munari DP, Ledur MC.

Animal. 2018 Jun;12(6):1126-1134. doi: 10.1017/S1751731117002671. Epub 2017 Oct 25.


DNA methylation profiles in red blood cells of adult hens correlate with their rearing conditions.

Pértille F, Brantsæter M, Nordgreen J, Coutinho LL, Janczak AM, Jensen P, Guerrero-Bosagna C.

J Exp Biol. 2017 Oct 1;220(Pt 19):3579-3587. doi: 10.1242/jeb.157891. Epub 2017 Aug 7.


Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, Azevedo FCC, Kantek D, Ramalho E, Brassaloti RA, Villela PMS, Nunes ALV, Teixeira RHF, Morato RG, Loska D, Saragüeta P, Gabaldón T, Teeling EC, O'Brien SJ, Nielsen R, Coutinho LL, Oliveira G, Murphy WJ, Eizirik E.

Sci Adv. 2017 Jul 19;3(7):e1700299. doi: 10.1126/sciadv.1700299. eCollection 2017 Jul.


Comparative muscle transcriptome associated with carcass traits of Nellore cattle.

Silva-Vignato B, Coutinho LL, Cesar ASM, Poleti MD, Regitano LCA, Balieiro JCC.

BMC Genomics. 2017 Jul 3;18(1):506. doi: 10.1186/s12864-017-3897-x.


Oviductal transcriptional profiling of a bovine fertility model by next-generation sequencing.

Gonella-Diaza AM, da Silva Andrade SC, Sponchiado M, Pugliesi G, Mesquita FS, Van Hoeck V, de Francisco Strefezzi R, Gasparin GR, Coutinho LL, Binelli M.

Genom Data. 2017 Jun 15;13:27-29. doi: 10.1016/j.gdata.2017.06.004. eCollection 2017 Sep.


Supplementation with small-extracellular vesicles from ovarian follicular fluid during in vitro production modulates bovine embryo development.

da Silveira JC, Andrade GM, Del Collado M, Sampaio RV, Sangalli JR, Silva LA, Pinaffi FVL, Jardim IB, Cesar MC, Nogueira MFG, Cesar ASM, Coutinho LL, Pereira RW, Perecin F, Meirelles FV.

PLoS One. 2017 Jun 15;12(6):e0179451. doi: 10.1371/journal.pone.0179451. eCollection 2017.


Genome-Enabled Prediction of Breeding Values for Feedlot Average Daily Weight Gain in Nelore Cattle.

Somavilla AL, Regitano LCA, Rosa GJM, Mokry FB, Mudadu MA, Tizioto PC, Oliveira PSN, Souza MM, Coutinho LL, Munari DP.

G3 (Bethesda). 2017 Jun 7;7(6):1855-1859. doi: 10.1534/g3.117.041442.


Large-scale SNP discovery and construction of a high-density genetic map of Colossoma macropomum through genotyping-by-sequencing.

Nunes JR, Liu S, Pértille F, Perazza CA, Villela PM, de Almeida-Val VM, Hilsdorf AW, Liu Z, Coutinho LL.

Sci Rep. 2017 Apr 7;7:46112. doi: 10.1038/srep46112.


Corrigendum: Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2017 Apr 5;7:44345. doi: 10.1038/srep44345. No abstract available.


Genotypic and allelic frequencies of gene polymorphisms associated with meat tenderness in Nellore beef cattle.

Carvalho ME, Eler JP, Bonin MN, Rezende FM, Biase FH, Meirelles FV, Regitano LC, Coutinho LL, Balieiro JC, Ferraz JB.

Genet Mol Res. 2017 Feb 16;16(1). doi: 10.4238/gmr16018957.


Genome-wide association study for performance traits in chickens using genotype by sequencing approach.

Pértille F, Moreira GC, Zanella R, Nunes JR, Boschiero C, Rovadoscki GA, Mourão GB, Ledur MC, Coutinho LL.

Sci Rep. 2017 Feb 9;7:41748. doi: 10.1038/srep41748.


EDA mutation by exome sequencing in non-syndromic X-linked oligodontia.

Martins L, Machado RA, Araujo DS, Giovani PA, Rebouças PD, Rodrigues LP, Mofatto LS, Ribeiro MM, Coutinho LL, Puppin-Rontani RM, Coletta RD, Nociti FH Jr, Kantovitz KR.

Clin Genet. 2017 Aug;92(2):227-229. doi: 10.1111/cge.12961. Epub 2017 Mar 19. No abstract available.


Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2016 Dec 22;6:39493. doi: 10.1038/srep39493. Erratum in: Sci Rep. 2017 Apr 05;7:44345.


Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid.

Berton MP, Fonseca LF, Gimenez DF, Utembergue BL, Cesar AS, Coutinho LL, de Lemos MV, Aboujaoude C, Pereira AS, Silva RM, Stafuzza NB, Feitosa FL, Chiaia HL, Olivieri BF, Peripolli E, Tonussi RL, Gordo DM, Espigolan R, Ferrinho AM, Mueller LF, de Albuquerque LG, de Oliveira HN, Duckett S, Baldi F.

BMC Genomics. 2016 Nov 25;17(1):972.


Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content.

Cesar AS, Regitano LC, Poleti MD, Andrade SC, Tizioto PC, Oliveira PS, Felício AM, do Nascimento ML, Chaves AS, Lanna DP, Tullio RR, Nassu RT, Koltes JE, Fritz-Waters E, Mourão GB, Zerlotini-Neto A, Reecy JM, Coutinho LL.

BMC Genomics. 2016 Nov 22;17(1):961.


Dynamic remodeling of endometrial extracellular matrix regulates embryo receptivity in cattle.

Scolari SC, Pugliesi G, Strefezzi RF, Andrade SC, Coutinho LL, Binelli M.

Reproduction. 2016 Oct 17. pii: REP-16-0237. [Epub ahead of print]


Appetite regulating factors in pacu (Piaractus mesopotamicus): Tissue distribution and effects of food quantity and quality on gene expression.

Volkoff H, Estevan Sabioni R, Coutinho LL, Cyrino JE.

Comp Biochem Physiol A Mol Integr Physiol. 2017 Jan;203:241-254. doi: 10.1016/j.cbpa.2016.09.022. Epub 2016 Oct 4.


Allele- and parent-of-origin-specific effects on expression of the KCNJ11 gene: A candidate for meat tenderness in cattle.

de Souza MM, Niciura SC, Tizioto PC, Ibelli AM, Gasparin G, Rocha MI, Bressani FA, Malagó W Jr, Diniz WJ, de Oliveira PS, Lima AO, Mudadu MA, Barioni Junior W, Coutinho LL, Regitano LC.

Genet Mol Res. 2016 Aug 29;15(3). doi: 10.4238/gmr.15038549.


Iron Content Affects Lipogenic Gene Expression in the Muscle of Nelore Beef Cattle.

Diniz WJ, Coutinho LL, Tizioto PC, Cesar AS, Gromboni CF, Nogueira AR, de Oliveira PS, Souza MM, Regitano LC.

PLoS One. 2016 Aug 17;11(8):e0161160. doi: 10.1371/journal.pone.0161160. eCollection 2016.


A single nucleotide polymorphism in NEUROD1 is associated with production traits in Nelore beef cattle.

de Oliveira PS, Tizioto PC, Malago W Jr, do Nascimento ML, Cesar AS, Diniz WJ, de Souza MM, Lanna DP, Tullio RR, Mourão GB, de A Mudadu M, Coutinho LL, de A Regitano LC.

Genet Mol Res. 2016 Jul 14;15(2). doi: 10.4238/gmr.15028161.

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