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Items: 23

1.

Trends of Microdiversity Reveal Depth-Dependent Evolutionary Strategies of Viruses in the Mediterranean.

Coutinho FH, Rosselli R, Rodríguez-Valera F.

mSystems. 2019 Nov 5;4(6). pii: e00554-19. doi: 10.1128/mSystems.00554-19.

2.

Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT.

von Meijenfeldt FAB, Arkhipova K, Cambuy DD, Coutinho FH, Dutilh BE.

Genome Biol. 2019 Oct 22;20(1):217. doi: 10.1186/s13059-019-1817-x.

3.

Modelling the influence of environmental parameters over marine planktonic microbial communities using artificial neural networks.

Coutinho FH, Thompson CC, Cabral AS, Paranhos R, Dutilh BE, Thompson FL.

Sci Total Environ. 2019 Aug 10;677:205-214. doi: 10.1016/j.scitotenv.2019.04.009. Epub 2019 Apr 26.

PMID:
31059870
4.

Genomic basis of antibiotic resistance in Vibrio parahaemolyticus strain JPA1.

Coutinho FH, Tschoeke DA, Clementino MM, Thompson CC, Thompson FL.

Mem Inst Oswaldo Cruz. 2019;114:e190053. doi: 10.1590/0074-02760190053. Epub 2019 Apr 25.

5.

Reply to: Caution in inferring viral strategies from abundance correlations in marine metagenomes.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.

Nat Commun. 2019 Jan 30;10(1):502. doi: 10.1038/s41467-018-08286-4. No abstract available.

6.

Ecological and genomic features of two widespread freshwater picocyanobacteria.

Cabello-Yeves PJ, Picazo A, Camacho A, Callieri C, Rosselli R, Roda-Garcia JJ, Coutinho FH, Rodriguez-Valera F.

Environ Microbiol. 2018 Oct;20(10):3757-3771. doi: 10.1111/1462-2920.14377. Epub 2018 Oct 2.

PMID:
30117250
7.

Metagenomics Sheds Light on the Ecology of Marine Microbes and Their Viruses.

Coutinho FH, Gregoracci GB, Walter JM, Thompson CC, Thompson FL.

Trends Microbiol. 2018 Nov;26(11):955-965. doi: 10.1016/j.tim.2018.05.015. Epub 2018 Jun 21. Review.

PMID:
29937307
8.

Thousands of Novel Endolysins Discovered in Uncultured Phage Genomes.

Fernández-Ruiz I, Coutinho FH, Rodriguez-Valera F.

Front Microbiol. 2018 May 18;9:1033. doi: 10.3389/fmicb.2018.01033. eCollection 2018.

9.

Ecogenomics and Taxonomy of Cyanobacteria Phylum.

Walter JM, Coutinho FH, Dutilh BE, Swings J, Thompson FL, Thompson CC.

Front Microbiol. 2017 Nov 14;8:2132. doi: 10.3389/fmicb.2017.02132. eCollection 2017.

10.

Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal.

Cabello-Yeves PJ, Zemskaya TI, Rosselli R, Coutinho FH, Zakharenko AS, Blinov VV, Rodriguez-Valera F.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e02132-17. doi: 10.1128/AEM.02132-17. Print 2018 Jan 1.

11.

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon.

Silva BSO, Coutinho FH, Gregoracci GB, Leomil L, de Oliveira LS, Fróes A, Tschoeke D, Soares AC, Cabral AS, Ward ND, Richey JE, Krusche AV, Yager PL, de Rezende CE, Thompson CC, Thompson FL.

mSphere. 2017 Oct 4;2(5). pii: e00366-17. doi: 10.1128/mSphere.00366-17. eCollection 2017 Sep-Oct.

12.

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans.

Coutinho FH, Silveira CB, Gregoracci GB, Thompson CC, Edwards RA, Brussaard CPD, Dutilh BE, Thompson FL.

Nat Commun. 2017 Jul 5;8:15955. doi: 10.1038/ncomms15955.

13.

Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle.

Silveira CB, Gregoracci GB, Coutinho FH, Silva GGZ, Haggerty JM, de Oliveira LS, Cabral AS, Rezende CE, Thompson CC, Francini-Filho RB, Edwards RA, Dinsdale EA, Thompson FL.

Front Microbiol. 2017 May 22;8:784. doi: 10.3389/fmicb.2017.00784. eCollection 2017.

14.

Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses.

Motlagh AM, Bhattacharjee AS, Coutinho FH, Dutilh BE, Casjens SR, Goel RK.

Front Microbiol. 2017 Mar 3;8:352. doi: 10.3389/fmicb.2017.00352. eCollection 2017.

15.

Corrigendum: Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Nov 3;539(7627):123. doi: 10.1038/nature19335. Epub 2016 Aug 24. No abstract available.

PMID:
27556939
16.

Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features.

Coutinho FH, Dutilh BE, Thompson CC, Thompson FL.

Arch Microbiol. 2016 Dec;198(10):973-986. Epub 2016 Jun 23.

PMID:
27339259
17.

Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16. Erratum in: Nature. 2016 Nov 3;539(7627):123.

PMID:
26982729
18.

Environmental and Sanitary Conditions of Guanabara Bay, Rio de Janeiro.

Fistarol GO, Coutinho FH, Moreira AP, Venas T, Cánovas A, de Paula SE Jr, Coutinho R, de Moura RL, Valentin JL, Tenenbaum DR, Paranhos R, do Valle Rde A, Vicente AC, Amado Filho GM, Pereira RC, Kruger R, Rezende CE, Thompson CC, Salomon PS, Thompson FL.

Front Microbiol. 2015 Nov 20;6:1232. doi: 10.3389/fmicb.2015.01232. eCollection 2015. Review.

19.

Diversity and antibiotic resistance profiles of Pseudomonads from a hospital wastewater treatment plant.

Santoro DO, Cardoso AM, Coutinho FH, Pinto LH, Vieira RP, Albano RM, Clementino MM.

J Appl Microbiol. 2015 Dec;119(6):1527-40. doi: 10.1111/jam.12936. Epub 2015 Nov 2.

20.

Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review.

Coutinho FH, Meirelles PM, Moreira AP, Paranhos RP, Dutilh BE, Thompson FL.

PeerJ. 2015 Jun 16;3:e1008. doi: 10.7717/peerj.1008. eCollection 2015.

21.

Antibiotic resistance is widespread in urban aquatic environments of Rio de Janeiro, Brazil.

Coutinho FH, Silveira CB, Pinto LH, Salloto GR, Cardoso AM, Martins OB, Vieira RP, Clementino MM.

Microb Ecol. 2014 Oct;68(3):441-52. doi: 10.1007/s00248-014-0422-5. Epub 2014 May 13.

PMID:
24821495
22.

Tropical aquatic Archaea show environment-specific community composition.

Silveira CB, Cardoso AM, Coutinho FH, Lima JL, Pinto LH, Albano RM, Clementino MM, Martins OB, Vieira RP.

PLoS One. 2013 Sep 25;8(9):e76321. doi: 10.1371/journal.pone.0076321. eCollection 2013.

23.

Pollution impacts on bacterioplankton diversity in a tropical urban coastal lagoon system.

Salloto GR, Cardoso AM, Coutinho FH, Pinto LH, Vieira RP, Chaia C, Lima JL, Albano RM, Martins OB, Clementino MM.

PLoS One. 2012;7(11):e51175. doi: 10.1371/journal.pone.0051175. Epub 2012 Nov 30.

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