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Items: 17

1.

Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin.

Moreau P, Cournac A, Palumbo GA, Marbouty M, Mortaza S, Thierry A, Cairo S, Lavigne M, Koszul R, Neuveut C.

Nat Commun. 2018 Oct 15;9(1):4268. doi: 10.1038/s41467-018-06739-4.

2.

High-salt-recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies.

Baudement MO, Cournac A, Court F, Seveno M, Parrinello H, Reynes C, Sabatier R, Bouschet T, Yi Z, Sallis S, Tancelin M, Rebouissou C, Cathala G, Lesne A, Mozziconacci J, Journot L, Forné T.

Genome Res. 2018 Nov;28(11):1733-1746. doi: 10.1101/gr.237073.118. Epub 2018 Oct 4.

3.

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins.

Lioy VS, Cournac A, Marbouty M, Duigou S, Mozziconacci J, Espéli O, Boccard F, Koszul R.

Cell. 2018 Feb 8;172(4):771-783.e18. doi: 10.1016/j.cell.2017.12.027. Epub 2018 Jan 18.

4.

Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay.

Marbouty M, Baudry L, Cournac A, Koszul R.

Sci Adv. 2017 Feb 17;3(2):e1602105. doi: 10.1126/sciadv.1602105. eCollection 2017 Feb.

5.

Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

Spichal M, Brion A, Herbert S, Cournac A, Marbouty M, Zimmer C, Koszul R, Fabre E.

J Cell Sci. 2016 Feb 15;129(4):681-92. doi: 10.1242/jcs.175745. Epub 2016 Jan 13.

6.

The 3D folding of metazoan genomes correlates with the association of similar repetitive elements.

Cournac A, Koszul R, Mozziconacci J.

Nucleic Acids Res. 2016 Jan 8;44(1):245-55. doi: 10.1093/nar/gkv1292. Epub 2015 Nov 24.

7.

Generation and Analysis of Chromosomal Contact Maps of Yeast Species.

Cournac A, Marbouty M, Mozziconacci J, Koszul R.

Methods Mol Biol. 2016;1361:227-45. doi: 10.1007/978-1-4939-3079-1_13.

8.

Spatial reorganization of telomeres in long-lived quiescent cells.

Guidi M, Ruault M, Marbouty M, Loïodice I, Cournac A, Billaudeau C, Hocher A, Mozziconacci J, Koszul R, Taddei A.

Genome Biol. 2015 Sep 23;16:206. doi: 10.1186/s13059-015-0766-2.

9.

Genome-wide replication landscape of Candida glabrata.

Descorps-Declère S, Saguez C, Cournac A, Marbouty M, Rolland T, Ma L, Bouchier C, Moszer I, Dujon B, Koszul R, Richard GF.

BMC Biol. 2015 Sep 2;13:69. doi: 10.1186/s12915-015-0177-6.

10.

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

Marbouty M, Le Gall A, Cattoni DI, Cournac A, Koh A, Fiche JB, Mozziconacci J, Murray H, Koszul R, Nollmann M.

Mol Cell. 2015 Aug 20;59(4):588-602. doi: 10.1016/j.molcel.2015.07.020.

11.

High-quality genome (re)assembly using chromosomal contact data.

Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R.

Nat Commun. 2014 Dec 17;5:5695. doi: 10.1038/ncomms6695.

12.

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms.

Marbouty M, Cournac A, Flot JF, Marie-Nelly H, Mozziconacci J, Koszul R.

Elife. 2014 Dec 17;3:e03318. doi: 10.7554/eLife.03318.

13.

3D genome reconstruction from chromosomal contacts.

Lesne A, Riposo J, Roger P, Cournac A, Mozziconacci J.

Nat Methods. 2014 Nov;11(11):1141-3. doi: 10.1038/nmeth.3104. Epub 2014 Sep 21.

PMID:
25240436
14.

Filling annotation gaps in yeast genomes using genome-wide contact maps.

Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R.

Bioinformatics. 2014 Aug 1;30(15):2105-13. doi: 10.1093/bioinformatics/btu162. Epub 2014 Apr 7.

15.

DNA looping in prokaryotes: experimental and theoretical approaches.

Cournac A, Plumbridge J.

J Bacteriol. 2013 Mar;195(6):1109-19. doi: 10.1128/JB.02038-12. Epub 2013 Jan 4. Review.

16.

Normalization of a chromosomal contact map.

Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J.

BMC Genomics. 2012 Aug 30;13:436. doi: 10.1186/1471-2164-13-436.

17.

Simple molecular networks that respond optimally to time-periodic stimulation.

Cournac A, Sepulchre JA.

BMC Syst Biol. 2009 Mar 3;3:29. doi: 10.1186/1752-0509-3-29.

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