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Items: 26

1.

Genome Assembly of the Dogface Butterfly Zerene cesonia.

Rodriguez-Caro L, Fenner J, Benson C, Van Belleghem SM, Counterman BA.

Genome Biol Evol. 2020 Jan 1;12(1):3580-3585. doi: 10.1093/gbe/evz254.

2.

Interplay between Developmental Flexibility and Determinism in the Evolution of Mimetic Heliconius Wing Patterns.

Concha C, Wallbank RWR, Hanly JJ, Fenner J, Livraghi L, Rivera ES, Paulo DF, Arias C, Vargas M, Sanjeev M, Morrison C, Tian D, Aguirre P, Ferrara S, Foley J, Pardo-Diaz C, Salazar C, Linares M, Massardo D, Counterman BA, Scott MJ, Jiggins CD, Papa R, Martin A, McMillan WO.

Curr Biol. 2019 Dec 2;29(23):3996-4009.e4. doi: 10.1016/j.cub.2019.10.010. Epub 2019 Nov 14.

PMID:
31735676
3.

Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry.

Lewis JJ, Geltman RC, Pollak PC, Rondem KE, Van Belleghem SM, Hubisz MJ, Munn PR, Zhang L, Benson C, Mazo-Vargas A, Danko CG, Counterman BA, Papa R, Reed RD.

Proc Natl Acad Sci U S A. 2019 Nov 26;116(48):24174-24183. doi: 10.1073/pnas.1907068116. Epub 2019 Nov 11.

PMID:
31712408
4.

Genomic architecture and introgression shape a butterfly radiation.

Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, García-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, Counterman BA, Papa R, Blaxter M, Reed RD, Dasmahapatra KK, Kronforst M, Joron M, Jiggins CD, McMillan WO, Di Palma F, Blumberg AJ, Wakeley J, Jaffe D, Mallet J.

Science. 2019 Nov 1;366(6465):594-599. doi: 10.1126/science.aaw2090.

PMID:
31672890
5.

Comparative Transcriptomics Provides Insights into Reticulate and Adaptive Evolution of a Butterfly Radiation.

Zhang W, Leon-Ricardo BX, van Schooten B, Van Belleghem SM, Counterman BA, McMillan WO, Kronforst MR, Papa R.

Genome Biol Evol. 2019 Oct 1;11(10):2963-2975. doi: 10.1093/gbe/evz202.

6.

patternize: An R package for quantifying colour pattern variation.

Van Belleghem SM, Papa R, Ortiz-Zuazaga H, Hendrickx F, Jiggins CD, McMillan WO, Counterman BA.

Methods Ecol Evol. 2018 Feb;9(2):390-398. doi: 10.1111/2041-210X.12853. Epub 2017 Jul 11.

7.

Patterns of Z chromosome divergence among Heliconius species highlight the importance of historical demography.

Van Belleghem SM, Baquero M, Papa R, Salazar C, McMillan WO, Counterman BA, Jiggins CD, Martin SH.

Mol Ecol. 2018 Oct;27(19):3852-3872. doi: 10.1111/mec.14560. Epub 2018 Apr 14.

8.

Complex modular architecture around a simple toolkit of wing pattern genes.

Van Belleghem SM, Rastas P, Papanicolaou A, Martin SH, Arias CF, Supple MA, Hanly JJ, Mallet J, Lewis JJ, Hines HM, Ruiz M, Salazar C, Linares M, Moreira GRP, Jiggins CD, Counterman BA, McMillan WO, Papa R.

Nat Ecol Evol. 2017;1(3):52. doi: 10.1038/s41559-016-0052. Epub 2017 Jan 30.

9.

Demographic Variation of Wolbachia Infection in the Endangered Mitchell's Satyr Butterfly.

Fenner J, Seltzer J, Peyton S, Sullivan H, Tolson P, Walsh RP, Hill J, Counterman BA.

Insects. 2017 May 9;8(2). pii: E50. doi: 10.3390/insects8020050.

10.

Transposable elements and small RNAs: Genomic fuel for species diversity.

Hoffmann FG, McGuire LP, Counterman BA, Ray DA.

Mob Genet Elements. 2015 Jul 24;5(5):63-66. eCollection 2015 Sep-Oct.

11.

Divergence with gene flow across a speciation continuum of Heliconius butterflies.

Supple MA, Papa R, Hines HM, McMillan WO, Counterman BA.

BMC Evol Biol. 2015 Sep 24;15:204. doi: 10.1186/s12862-015-0486-y.

12.

Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera.

Lavoie CA, Platt RN 2nd, Novick PA, Counterman BA, Ray DA.

Mob DNA. 2013 Oct 2;4(1):21. doi: 10.1186/1759-8753-4-21.

13.

Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies.

Supple MA, Hines HM, Dasmahapatra KK, Lewis JJ, Nielsen DM, Lavoie C, Ray DA, Salazar C, McMillan WO, Counterman BA.

Genome Res. 2013 Aug;23(8):1248-57. doi: 10.1101/gr.150615.112. Epub 2013 May 14.

14.

Multi-allelic major effect genes interact with minor effect QTLs to control adaptive color pattern variation in Heliconius erato.

Papa R, Kapan DD, Counterman BA, Maldonado K, Lindstrom DP, Reed RD, Nijhout HF, Hrbek T, McMillan WO.

PLoS One. 2013;8(3):e57033. doi: 10.1371/journal.pone.0057033. Epub 2013 Mar 22.

15.

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand.

Martin A, Papa R, Nadeau NJ, Hill RI, Counterman BA, Halder G, Jiggins CD, Kronforst MR, Long AD, McMillan WO, Reed RD.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12632-7. doi: 10.1073/pnas.1204800109. Epub 2012 Jul 16.

16.

Wing patterning gene redefines the mimetic history of Heliconius butterflies.

Hines HM, Counterman BA, Papa R, Albuquerque de Moura P, Cardoso MZ, Linares M, Mallet J, Reed RD, Jiggins CD, Kronforst MR, McMillan WO.

Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19666-71. doi: 10.1073/pnas.1110096108. Epub 2011 Nov 14.

17.

optix drives the repeated convergent evolution of butterfly wing pattern mimicry.

Reed RD, Papa R, Martin A, Hines HM, Counterman BA, Pardo-Diaz C, Jiggins CD, Chamberlain NL, Kronforst MR, Chen R, Halder G, Nijhout HF, McMillan WO.

Science. 2011 Aug 26;333(6046):1137-41. doi: 10.1126/science.1208227. Epub 2011 Jul 21.

18.

Dissecting comimetic radiations in Heliconius reveals divergent histories of convergent butterflies.

Quek SP, Counterman BA, Albuquerque de Moura P, Cardoso MZ, Marshall CR, McMillan WO, Kronforst MR.

Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7365-70. doi: 10.1073/pnas.0911572107. Epub 2010 Apr 5.

19.

Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in Heliconius erato.

Counterman BA, Araujo-Perez F, Hines HM, Baxter SW, Morrison CM, Lindstrom DP, Papa R, Ferguson L, Joron M, Ffrench-Constant RH, Smith CP, Nielsen DM, Chen R, Jiggins CD, Reed RD, Halder G, Mallet J, McMillan WO.

PLoS Genet. 2010 Feb 5;6(2):e1000796. doi: 10.1371/journal.pgen.1000796.

20.

Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in the Heliconius melpomene clade.

Baxter SW, Nadeau NJ, Maroja LS, Wilkinson P, Counterman BA, Dawson A, Beltran M, Perez-Espona S, Chamberlain N, Ferguson L, Clark R, Davidson C, Glithero R, Mallet J, McMillan WO, Kronforst M, Joron M, Ffrench-Constant RH, Jiggins CD.

PLoS Genet. 2010 Feb 5;6(2):e1000794. doi: 10.1371/journal.pgen.1000794.

21.

Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies.

Papa R, Morrison CM, Walters JR, Counterman BA, Chen R, Halder G, Ferguson L, Chamberlain N, Ffrench-Constant R, Kapan DD, Jiggins CD, Reed RD, McMillan WO.

BMC Genomics. 2008 Jul 22;9:345. doi: 10.1186/1471-2164-9-345.

22.

Multilocus test for introgression between the cactophilic species Drosophila mojavensis and Drosophila arizonae.

Counterman BA, Noor MA.

Am Nat. 2006 Nov;168(5):682-96. Epub 2006 Sep 29.

PMID:
17080365
23.

Gene expression divergence and the origin of hybrid dysfunctions.

Ortíz-Barrientos D, Counterman BA, Noor MA.

Genetica. 2007 Jan;129(1):71-81. Epub 2006 Oct 17. Review.

PMID:
17043744
24.

The genetics of speciation by reinforcement.

Ortiz-Barrientos D, Counterman BA, Noor MA.

PLoS Biol. 2004 Dec;2(12):e416. Epub 2004 Nov 23.

25.

Using comparative genomic data to test for fast-X evolution.

Counterman BA, Ortíz-Barrientos D, Noor MA.

Evolution. 2004 Mar;58(3):656-60.

PMID:
15119449
26.

Molecular evolution of X-linked accessory gland proteins in Drosophila pseudoobscura.

Stevison LS, Counterman BA, Noor MA.

J Hered. 2004 Mar-Apr;95(2):114-8. Erratum in: J Hered. 2005 Sep-Oct;96(5):1 p following table of contents.

PMID:
15073226

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