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Recent advances in diffusion neuroimaging: applications in the developing preterm brain.

Pecheva D, Kelly C, Kimpton J, Bonthrone A, Batalle D, Zhang H, Counsell SJ.

F1000Res. 2018 Aug 21;7. pii: F1000 Faculty Rev-1326. doi: 10.12688/f1000research.15073.1. eCollection 2018. Review.


Different patterns of cortical maturation before and after 38 weeks gestational age demonstrated by diffusion MRI in vivo.

Batalle D, O'Muircheartaigh J, Makropoulos A, Kelly CJ, Dimitrova R, Hughes EJ, Hajnal JV, Zhang H, Alexander DC, Edwards AD, Counsell SJ.

Neuroimage. 2018 May 23. pii: S1053-8119(18)30460-9. doi: 10.1016/j.neuroimage.2018.05.046. [Epub ahead of print]


Advances in neonatal MRI of the brain: from research to practice.

Kelly CJ, Hughes EJ, Rutherford MA, Counsell SJ.

Arch Dis Child Educ Pract Ed. 2018 Mar 21. pii: edpract-2018-314778. doi: 10.1136/archdischild-2018-314778. [Epub ahead of print] No abstract available.


The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction.

Makropoulos A, Robinson EC, Schuh A, Wright R, Fitzgibbon S, Bozek J, Counsell SJ, Steinweg J, Vecchiato K, Passerat-Palmbach J, Lenz G, Mortari F, Tenev T, Duff EP, Bastiani M, Cordero-Grande L, Hughes E, Tusor N, Tournier JD, Hutter J, Price AN, Teixeira RPAG, Murgasova M, Victor S, Kelly C, Rutherford MA, Smith SM, Edwards AD, Hajnal JV, Jenkinson M, Rueckert D.

Neuroimage. 2018 Jun;173:88-112. doi: 10.1016/j.neuroimage.2018.01.054. Epub 2018 Jan 31.


Exploring the multiple-hit hypothesis of preterm white matter damage using diffusion MRI.

Barnett ML, Tusor N, Ball G, Chew A, Falconer S, Aljabar P, Kimpton JA, Kennea N, Rutherford M, David Edwards A, Counsell SJ.

Neuroimage Clin. 2017 Nov 21;17:596-606. doi: 10.1016/j.nicl.2017.11.017. eCollection 2018.


Machine learning shows association between genetic variability in PPARG and cerebral connectivity in preterm infants.

Krishnan ML, Wang Z, Aljabar P, Ball G, Mirza G, Saxena A, Counsell SJ, Hajnal JV, Montana G, Edwards AD.

Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):13744-13749. doi: 10.1073/pnas.1704907114. Epub 2017 Dec 11.


Impaired development of the cerebral cortex in infants with congenital heart disease is correlated to reduced cerebral oxygen delivery.

Kelly CJ, Makropoulos A, Cordero-Grande L, Hutter J, Price A, Hughes E, Murgasova M, Teixeira RPAG, Steinweg JK, Kulkarni S, Rahman L, Zhang H, Alexander DC, Pushparajah K, Rueckert D, Hajnal JV, Simpson J, Edwards AD, Rutherford MA, Counsell SJ.

Sci Rep. 2017 Nov 8;7(1):15088. doi: 10.1038/s41598-017-14939-z.


Punctate White Matter Lesions Associated With Altered Brain Development And Adverse Motor Outcome In Preterm Infants.

Tusor N, Benders MJ, Counsell SJ, Nongena P, Ederies MA, Falconer S, Chew A, Gonzalez-Cinca N, Hajnal JV, Gangadharan S, Chatzi V, Kersbergen KJ, Kennea N, Azzopardi DV, Edwards AD.

Sci Rep. 2017 Oct 16;7(1):13250. doi: 10.1038/s41598-017-13753-x.


Multimodal image analysis of clinical influences on preterm brain development.

Ball G, Aljabar P, Nongena P, Kennea N, Gonzalez-Cinca N, Falconer S, Chew ATM, Harper N, Wurie J, Rutherford MA, Counsell SJ, Edwards AD.

Ann Neurol. 2017 Aug;82(2):233-246. doi: 10.1002/ana.24995. Epub 2017 Aug 19.


A review on automatic fetal and neonatal brain MRI segmentation.

Makropoulos A, Counsell SJ, Rueckert D.

Neuroimage. 2018 Apr 15;170:231-248. doi: 10.1016/j.neuroimage.2017.06.074. Epub 2017 Jun 28. Review.


Neuroimaging, cardiovascular physiology, and functional outcomes in infants with congenital heart disease.

Claessens NHP, Kelly CJ, Counsell SJ, Benders MJNL.

Dev Med Child Neurol. 2017 Sep;59(9):894-902. doi: 10.1111/dmcn.13461. Epub 2017 May 19. Review.


Language ability in preterm children is associated with arcuate fasciculi microstructure at term.

Salvan P, Tournier JD, Batalle D, Falconer S, Chew A, Kennea N, Aljabar P, Dehaene-Lambertz G, Arichi T, Edwards AD, Counsell SJ.

Hum Brain Mapp. 2017 Aug;38(8):3836-3847. doi: 10.1002/hbm.23632. Epub 2017 May 4.


A tract-specific approach to assessing white matter in preterm infants.

Pecheva D, Yushkevich P, Batalle D, Hughes E, Aljabar P, Wurie J, Hajnal JV, Edwards AD, Alexander DC, Counsell SJ, Zhang H.

Neuroimage. 2017 Aug 15;157:675-694. doi: 10.1016/j.neuroimage.2017.04.057. Epub 2017 Apr 27.


Early development of structural networks and the impact of prematurity on brain connectivity.

Batalle D, Hughes EJ, Zhang H, Tournier JD, Tusor N, Aljabar P, Wali L, Alexander DC, Hajnal JV, Nosarti C, Edwards AD, Counsell SJ.

Neuroimage. 2017 Apr 1;149:379-392. doi: 10.1016/j.neuroimage.2017.01.065. Epub 2017 Jan 30.


The emergence of functional architecture during early brain development.

Keunen K, Counsell SJ, Benders MJNL.

Neuroimage. 2017 Oct 15;160:2-14. doi: 10.1016/j.neuroimage.2017.01.047. Epub 2017 Jan 20.


Longitudinal Regional Brain Development and Clinical Risk Factors in Extremely Preterm Infants.

Kersbergen KJ, Makropoulos A, Aljabar P, Groenendaal F, de Vries LS, Counsell SJ, Benders MJ.

J Pediatr. 2016 Nov;178:93-100.e6. doi: 10.1016/j.jpeds.2016.08.024. Epub 2016 Sep 12.


A multimodal imaging study of recognition memory in very preterm born adults.

Tseng CJ, Froudist-Walsh S, Brittain PJ, Karolis V, Caldinelli C, Kroll J, Counsell SJ, Williams SC, Murray RM, Nosarti C.

Hum Brain Mapp. 2017 Feb;38(2):644-655. doi: 10.1002/hbm.23405. Epub 2016 Sep 20.


A dedicated neonatal brain imaging system.

Hughes EJ, Winchman T, Padormo F, Teixeira R, Wurie J, Sharma M, Fox M, Hutter J, Cordero-Grande L, Price AN, Allsop J, Bueno-Conde J, Tusor N, Arichi T, Edwards AD, Rutherford MA, Counsell SJ, Hajnal JV.

Magn Reson Med. 2017 Aug;78(2):794-804. doi: 10.1002/mrm.26462. Epub 2016 Sep 19.


Cerebello-cerebral connectivity in the developing brain.

Pieterman K, Batalle D, Dudink J, Tournier JD, Hughes EJ, Barnett M, Benders MJ, Edwards AD, Hoebeek FE, Counsell SJ.

Brain Struct Funct. 2017 May;222(4):1625-1634. doi: 10.1007/s00429-016-1296-8. Epub 2016 Aug 29.


Possible relationship between common genetic variation and white matter development in a pilot study of preterm infants.

Krishnan ML, Wang Z, Silver M, Boardman JP, Ball G, Counsell SJ, Walley AJ, Montana G, Edwards AD.

Brain Behav. 2016 Apr 2;6(7):e00434. doi: 10.1002/brb3.434. eCollection 2016 Jul.


Altered white matter and cortical structure in neonates with antenatally diagnosed isolated ventriculomegaly.

Lockwood Estrin G, Kyriakopoulou V, Makropoulos A, Ball G, Kuhendran L, Chew A, Hagberg B, Martinez-Biarge M, Allsop J, Fox M, Counsell SJ, Rutherford MA.

Neuroimage Clin. 2016 Jan 14;11:139-148. doi: 10.1016/j.nicl.2016.01.012. eCollection 2016.


Regional growth and atlasing of the developing human brain.

Makropoulos A, Aljabar P, Wright R, Hüning B, Merchant N, Arichi T, Tusor N, Hajnal JV, Edwards AD, Counsell SJ, Rueckert D.

Neuroimage. 2016 Jan 15;125:456-478. doi: 10.1016/j.neuroimage.2015.10.047. Epub 2015 Oct 21.


Maturation of Sensori-Motor Functional Responses in the Preterm Brain.

Allievi AG, Arichi T, Tusor N, Kimpton J, Arulkumaran S, Counsell SJ, Edwards AD, Burdet E.

Cereb Cortex. 2016 Jan;26(1):402-413. doi: 10.1093/cercor/bhv203. Epub 2015 Oct 21.


Machine-learning to characterise neonatal functional connectivity in the preterm brain.

Ball G, Aljabar P, Arichi T, Tusor N, Cox D, Merchant N, Nongena P, Hajnal JV, Edwards AD, Counsell SJ.

Neuroimage. 2016 Jan 1;124(Pt A):267-275. doi: 10.1016/j.neuroimage.2015.08.055. Epub 2015 Sep 2.


Corticospinal Tract Injury Precedes Thalamic Volume Reduction in Preterm Infants with Cystic Periventricular Leukomalacia.

Kersbergen KJ, de Vries LS, Groenendaal F, van Haastert IC, Chew AT, Makropoulos A, Dawson SL, Cowan FM, Benders MJ, Counsell SJ.

J Pediatr. 2015 Aug;167(2):260-8.e3. doi: 10.1016/j.jpeds.2015.05.013. Epub 2015 Jun 6.


Development of the Corticospinal and Callosal Tracts from Extremely Premature Birth up to 2 Years of Age.

Braga RM, Roze E, Ball G, Merchant N, Tusor N, Arichi T, Edwards D, Rueckert D, Counsell SJ.

PLoS One. 2015 May 8;10(5):e0125681. doi: 10.1371/journal.pone.0125681. eCollection 2015.


Specialization and integration of functional thalamocortical connectivity in the human infant.

Toulmin H, Beckmann CF, O'Muircheartaigh J, Ball G, Nongena P, Makropoulos A, Ederies A, Counsell SJ, Kennea N, Arichi T, Tusor N, Rutherford MA, Azzopardi D, Gonzalez-Cinca N, Hajnal JV, Edwards AD.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):6485-90. doi: 10.1073/pnas.1422638112. Epub 2015 May 4.


Thalamocortical Connectivity Predicts Cognition in Children Born Preterm.

Ball G, Pazderova L, Chew A, Tusor N, Merchant N, Arichi T, Allsop JM, Cowan FM, Edwards AD, Counsell SJ.

Cereb Cortex. 2015 Nov;25(11):4310-8. doi: 10.1093/cercor/bhu331. Epub 2015 Jan 16.


Evaluation of automatic neonatal brain segmentation algorithms: the NeoBrainS12 challenge.

Išgum I, Benders MJ, Avants B, Cardoso MJ, Counsell SJ, Gomez EF, Gui L, Hűppi PS, Kersbergen KJ, Makropoulos A, Melbourne A, Moeskops P, Mol CP, Kuklisova-Murgasova M, Rueckert D, Schnabel JA, Srhoj-Egekher V, Wu J, Wang S, de Vries LS, Viergever MA.

Med Image Anal. 2015 Feb;20(1):135-51. doi: 10.1016/ Epub 2014 Nov 15.


The effects of hemorrhagic parenchymal infarction on the establishment of sensori-motor structural and functional connectivity in early infancy.

Arichi T, Counsell SJ, Allievi AG, Chew AT, Martinez-Biarge M, Mondi V, Tusor N, Merchant N, Burdet E, Cowan FM, Edwards AD.

Neuroradiology. 2014 Nov;56(11):985-94. doi: 10.1007/s00234-014-1412-5. Epub 2014 Aug 14.


Automatic whole brain MRI segmentation of the developing neonatal brain.

Makropoulos A, Gousias IS, Ledig C, Aljabar P, Serag A, Hajnal JV, Edwards AD, Counsell SJ, Rueckert D.

IEEE Trans Med Imaging. 2014 Sep;33(9):1818-31. doi: 10.1109/TMI.2014.2322280. Epub 2014 May 6.


Rich-club organization of the newborn human brain.

Ball G, Aljabar P, Zebari S, Tusor N, Arichi T, Merchant N, Robinson EC, Ogundipe E, Rueckert D, Edwards AD, Counsell SJ.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):7456-61. doi: 10.1073/pnas.1324118111. Epub 2014 May 5.


New imaging approaches to evaluate newborn brain injury and their role in predicting developmental disorders.

Counsell SJ, Ball G, Edwards AD.

Curr Opin Neurol. 2014 Apr;27(2):168-75. doi: 10.1097/WCO.0000000000000073. Review.


Brain development in preterm infants assessed using advanced MRI techniques.

Tusor N, Arichi T, Counsell SJ, Edwards AD.

Clin Perinatol. 2014 Mar;41(1):25-45. doi: 10.1016/j.clp.2013.10.001. Epub 2013 Dec 12. Review.


Normalisation of neonatal brain network measures using stochastic approaches.

Schirmer M, Ball G, Counsell SJ, Edwards AD, Rueckert D, Hajnal JV, Aljabar P.

Med Image Comput Comput Assist Interv. 2013;16(Pt 1):574-81.


Diffusion magnetic resonance imaging in preterm brain injury.

Pandit AS, Ball G, Edwards AD, Counsell SJ.

Neuroradiology. 2013 Sep;55 Suppl 2:65-95. doi: 10.1007/s00234-013-1242-x. Epub 2013 Aug 14. Review.


Testing the sensitivity of Tract-Based Spatial Statistics to simulated treatment effects in preterm neonates.

Ball G, Boardman JP, Arichi T, Merchant N, Rueckert D, Edwards AD, Counsell SJ.

PLoS One. 2013 Jul 3;8(7):e67706. doi: 10.1371/journal.pone.0067706. Print 2013.


Development of cortical microstructure in the preterm human brain.

Ball G, Srinivasan L, Aljabar P, Counsell SJ, Durighel G, Hajnal JV, Rutherford MA, Edwards AD.

Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9541-6. doi: 10.1073/pnas.1301652110. Epub 2013 May 21.


Magnetic resonance imaging of the newborn brain: automatic segmentation of brain images into 50 anatomical regions.

Gousias IS, Hammers A, Counsell SJ, Srinivasan L, Rutherford MA, Heckemann RA, Hajnal JV, Rueckert D, Edwards AD.

PLoS One. 2013;8(4):e59990. doi: 10.1371/journal.pone.0059990. Epub 2013 Apr 2.


Whole-brain mapping of structural connectivity in infants reveals altered connection strength associated with growth and preterm birth.

Pandit AS, Robinson E, Aljabar P, Ball G, Gousias IS, Wang Z, Hajnal JV, Rueckert D, Counsell SJ, Montana G, Edwards AD.

Cereb Cortex. 2014 Sep;24(9):2324-33. doi: 10.1093/cercor/bht086. Epub 2013 Mar 31.


Diffusion-weighted imaging and its relationship to microglial activation in parkinsonian syndromes.

Kobylecki C, Counsell SJ, Cabanel N, Wächter T, Turkheimer FE, Eggert K, Oertel W, Brooks DJ, Gerhard A.

Parkinsonism Relat Disord. 2013 May;19(5):527-32. doi: 10.1016/j.parkreldis.2013.01.017. Epub 2013 Feb 18.


The influence of preterm birth on the developing thalamocortical connectome.

Ball G, Boardman JP, Aljabar P, Pandit A, Arichi T, Merchant N, Rueckert D, Edwards AD, Counsell SJ.

Cortex. 2013 Jun;49(6):1711-21. doi: 10.1016/j.cortex.2012.07.006. Epub 2012 Aug 9.


Regional changes in thalamic shape and volume with increasing age.

Hughes EJ, Bond J, Svrckova P, Makropoulos A, Ball G, Sharp DJ, Edwards AD, Hajnal JV, Counsell SJ.

Neuroimage. 2012 Nov 15;63(3):1134-42. doi: 10.1016/j.neuroimage.2012.07.043. Epub 2012 Jul 27.


Development of BOLD signal hemodynamic responses in the human brain.

Arichi T, Fagiolo G, Varela M, Melendez-Calderon A, Allievi A, Merchant N, Tusor N, Counsell SJ, Burdet E, Beckmann CF, Edwards AD.

Neuroimage. 2012 Nov 1;63(2):663-73. doi: 10.1016/j.neuroimage.2012.06.054. Epub 2012 Jul 6.


Magnetic resonance imaging of the newborn brain: manual segmentation of labelled atlases in term-born and preterm infants.

Gousias IS, Edwards AD, Rutherford MA, Counsell SJ, Hajnal JV, Rueckert D, Hammers A.

Neuroimage. 2012 Sep;62(3):1499-509. doi: 10.1016/j.neuroimage.2012.05.083. Epub 2012 Jun 17.


Motion-compensation techniques in neonatal and fetal MR imaging.

Malamateniou C, Malik SJ, Counsell SJ, Allsop JM, McGuinness AK, Hayat T, Broadhouse K, Nunes RG, Ederies AM, Hajnal JV, Rutherford MA.

AJNR Am J Neuroradiol. 2013 Jun-Jul;34(6):1124-36. doi: 10.3174/ajnr.A3128. Epub 2012 May 10. Review.


Development of the optic radiations and visual function after premature birth.

Groppo M, Ricci D, Bassi L, Merchant N, Doria V, Arichi T, Allsop JM, Ramenghi L, Fox MJ, Cowan FM, Counsell SJ, Edwards AD.

Cortex. 2014 Jul;56:30-7. doi: 10.1016/j.cortex.2012.02.008. Epub 2012 Mar 8.


Prediction of neurodevelopmental outcome after hypoxic-ischemic encephalopathy treated with hypothermia by diffusion tensor imaging analyzed using tract-based spatial statistics.

Tusor N, Wusthoff C, Smee N, Merchant N, Arichi T, Allsop JM, Cowan FM, Azzopardi D, Edwards AD, Counsell SJ.

Pediatr Res. 2012 Jul;72(1):63-9. doi: 10.1038/pr.2012.40. Epub 2012 Mar 23.


DTI reveals network injury in perinatal stroke.

Dudink J, Counsell SJ, Lequin MH, Govaert PP.

Arch Dis Child Fetal Neonatal Ed. 2012 Sep;97(5):F362-4. doi: 10.1136/archdischild-2011-300121. Epub 2011 Oct 20.


Tractography of the corticospinal tracts in infants with focal perinatal injury: comparison with normal controls and to motor development.

Roze E, Harris PA, Ball G, Elorza LZ, Braga RM, Allsop JM, Merchant N, Porter E, Arichi T, Edwards AD, Rutherford MA, Cowan FM, Counsell SJ.

Neuroradiology. 2012 May;54(5):507-16. doi: 10.1007/s00234-011-0969-5. Epub 2011 Oct 18.


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