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Items: 42

1.

Epigenetic DNA Methylation Profiling with MSRE: A Quantitative NGS Approach Using a Parkinson's Disease Test Case.

Marsh AG, Cottrell MT, Goldman MF.

Front Genet. 2016 Nov 2;7:191. eCollection 2016.

2.

Transcriptional Control in Marine Copiotrophic and Oligotrophic Bacteria with Streamlined Genomes.

Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2016 Sep 16;82(19):6010-8. doi: 10.1128/AEM.01299-16. Print 2016 Oct 1.

3.

Single-cell activity of freshwater aerobic anoxygenic phototrophic bacteria and their contribution to biomass production.

Garcia-Chaves MC, Cottrell MT, Kirchman DL, Ruiz-González C, Del Giorgio PA.

ISME J. 2016 Jul;10(7):1579-88. doi: 10.1038/ismej.2015.242. Epub 2016 Jan 15.

4.

Growth rates and rRNA content of four marine bacteria in pure cultures and in the Delaware estuary.

Lankiewicz TS, Cottrell MT, Kirchman DL.

ISME J. 2016 Apr;10(4):823-32. doi: 10.1038/ismej.2015.156. Epub 2015 Sep 22.

5.

Patterns in Abundance, Cell Size and Pigment Content of Aerobic Anoxygenic Phototrophic Bacteria along Environmental Gradients in Northern Lakes.

Fauteux L, Cottrell MT, Kirchman DL, Borrego CM, Garcia-Chaves MC, Del Giorgio PA.

PLoS One. 2015 Apr 30;10(4):e0124035. doi: 10.1371/journal.pone.0124035. eCollection 2015.

6.

Leucine incorporation by aerobic anoxygenic phototrophic bacteria in the Delaware estuary.

Stegman MR, Cottrell MT, Kirchman DL.

ISME J. 2014 Nov;8(11):2339-48. doi: 10.1038/ismej.2014.75. Epub 2014 May 13.

7.

Uptake of dissolved organic carbon by gammaproteobacterial subgroups in coastal waters of the West Antarctic Peninsula.

Nikrad MP, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2014 Jun;80(11):3362-8. doi: 10.1128/AEM.00121-14. Epub 2014 Mar 21.

8.

Growth activity of gammaproteobacterial subgroups in waters off the west Antarctic Peninsula in summer and fall.

Nikrad MP, Cottrell MT, Kirchman DL.

Environ Microbiol. 2014 Jun;16(6):1513-23. doi: 10.1111/1462-2920.12258. Epub 2013 Sep 30.

PMID:
24118807
9.

Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture study.

Landa M, Cottrell MT, Kirchman DL, Kaiser K, Medeiros PM, Tremblay L, Batailler N, Caparros J, Catala P, Escoubeyrou K, Oriol L, Blain S, Obernosterer I.

Environ Microbiol. 2014 Jun;16(6):1668-81. doi: 10.1111/1462-2920.12242. Epub 2013 Sep 10.

PMID:
24020678
10.

Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean.

Boeuf D, Cottrell MT, Kirchman DL, Lebaron P, Jeanthon C.

FEMS Microbiol Ecol. 2013 Sep;85(3):417-32. doi: 10.1111/1574-6941.12130. Epub 2013 May 1.

11.

Arsenite modifies structure of soil microbial communities and arsenite oxidization potential.

Lami R, Jones LC, Cottrell MT, Lafferty BJ, Ginder-Vogel M, Sparks DL, Kirchman DL.

FEMS Microbiol Ecol. 2013 May;84(2):270-9. doi: 10.1111/1574-6941.12061. Epub 2013 Jan 8.

12.

Abundance and single-cell activity of heterotrophic bacterial groups in the western Arctic Ocean in summer and winter.

Nikrad MP, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2012 Apr;78(7):2402-9. doi: 10.1128/AEM.07130-11. Epub 2012 Jan 27.

13.

Assimilation of marine extracellular polymeric substances by deep-sea prokaryotes in the NW Mediterranean Sea.

Boutrif M, Garel M, Cottrell MT, Tamburini C.

Environ Microbiol Rep. 2011 Dec;3(6):705-9. doi: 10.1111/j.1758-2229.2011.00285.x. Epub 2011 Oct 23.

PMID:
23761360
14.

Abundance, diversity, and activity of ammonia-oxidizing prokaryotes in the coastal Arctic ocean in summer and winter.

Christman GD, Cottrell MT, Popp BN, Gier E, Kirchman DL.

Appl Environ Microbiol. 2011 Mar;77(6):2026-34. doi: 10.1128/AEM.01907-10. Epub 2011 Jan 14.

15.

Summer distribution and diversity of aerobic anoxygenic phototrophic bacteria in the Mediterranean Sea in relation to environmental variables.

Lehours AC, Cottrell MT, Dahan O, Kirchman DL, Jeanthon C.

FEMS Microbiol Ecol. 2010 Nov;74(2):397-409. doi: 10.1111/j.1574-6941.2010.00954.x. Epub 2010 Sep 7.

16.

Primary production in a subtropical stratified coastal lagoon--contribution of anoxygenic phototrophic bacteria.

Fontes ML, Suzuki MT, Cottrell MT, Abreu PC.

Microb Ecol. 2011 Jan;61(1):223-37. doi: 10.1007/s00248-010-9739-x. Epub 2010 Sep 1.

PMID:
20809289
17.

Bacteriochlorophyll and community structure of aerobic anoxygenic phototrophic bacteria in a particle-rich estuary.

Cottrell MT, Ras J, Kirchman DL.

ISME J. 2010 Jul;4(7):945-54. doi: 10.1038/ismej.2010.13. Epub 2010 Feb 25.

PMID:
20182527
18.

The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes.

Kirchman DL, Cottrell MT, Lovejoy C.

Environ Microbiol. 2010 May;12(5):1132-43. doi: 10.1111/j.1462-2920.2010.02154.x. Epub 2010 Feb 3.

PMID:
20132284
19.

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.

Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, Kirchman DL, McDole T, McPherson JD, Meyer F, Miller RM, Mundt E, Naviaux RK, Rodriguez-Mueller B, Stevens R, Wegley L, Zhang L, Zhu B, Rohwer F.

PLoS Comput Biol. 2009 Dec;5(12):e1000593. doi: 10.1371/journal.pcbi.1000593. Epub 2009 Dec 11.

20.

Light-dependent growth and proteorhodopsin expression by Flavobacteria and SAR11 in experiments with Delaware coastal waters.

Lami R, Cottrell MT, Campbell BJ, Kirchman DL.

Environ Microbiol. 2009 Dec;11(12):3201-9. doi: 10.1111/j.1462-2920.2009.02028.x. Epub 2009 Aug 18.

PMID:
19691506
21.

Photoheterotrophic microbes in the Arctic Ocean in summer and winter.

Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2009 Aug;75(15):4958-66. doi: 10.1128/AEM.00117-09. Epub 2009 Jun 5.

22.

Geographic and phylogenetic variation in bacterial biovolume as revealed by protein and nucleic acid staining.

Straza TR, Cottrell MT, Ducklow HW, Kirchman DL.

Appl Environ Microbiol. 2009 Jun;75(12):4028-34. doi: 10.1128/AEM.00183-09. Epub 2009 Apr 17.

23.

Abundant proteorhodopsin genes in the North Atlantic Ocean.

Campbell BJ, Waidner LA, Cottrell MT, Kirchman DL.

Environ Microbiol. 2008 Jan;10(1):99-109. doi: 10.1111/j.1462-2920.2007.01436.x.

PMID:
18211270
24.

Diversity and abundance of glycosyl hydrolase family 5 in the North Atlantic Ocean.

Elifantz H, Waidner LA, Michelou VK, Cottrell MT, Kirchman DL.

FEMS Microbiol Ecol. 2008 Mar;63(3):316-27. doi: 10.1111/j.1574-6941.2007.00429.x. Epub 2008 Jan 5.

25.

Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic ocean.

Michelou VK, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2007 Sep;73(17):5539-46. Epub 2007 Jul 13.

26.

High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean.

Lami R, Cottrell MT, Ras J, Ulloa O, Obernosterer I, Claustre H, Kirchman DL, Lebaron P.

Appl Environ Microbiol. 2007 Jul;73(13):4198-205. Epub 2007 May 11.

27.

Bacterial community structure of biofilms on artificial surfaces in an estuary.

Jones PR, Cottrell MT, Kirchman DL, Dexter SC.

Microb Ecol. 2007 Jan;53(1):153-62. Epub 2006 Dec 22.

PMID:
17186146
28.

Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre.

Cottrell MT, Mannino A, Kirchman DL.

Appl Environ Microbiol. 2006 Jan;72(1):557-64.

29.
30.

Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary.

Elifantz H, Malmstrom RR, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2005 Dec;71(12):7799-805.

31.

Bacterial diversity of metagenomic and PCR libraries from the Delaware River.

Cottrell MT, Waidner LA, Yu L, Kirchman DL.

Environ Microbiol. 2005 Dec;7(12):1883-95.

PMID:
16309387
32.

Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean.

Malmstrom RR, Cottrell MT, Elifantz H, Kirchman DL.

Appl Environ Microbiol. 2005 Jun;71(6):2979-86.

33.

Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean.

Malmstrom RR, Kiene RP, Cottrell MT, Kirchman DL.

Appl Environ Microbiol. 2004 Jul;70(7):4129-35.

34.

Diversity and abundance of uncultured cytophaga-like bacteria in the Delaware estuary.

Kirchman DL, Yu L, Cottrell MT.

Appl Environ Microbiol. 2003 Nov;69(11):6587-96.

35.
37.
38.

Chitinases from uncultured marine microorganisms.

Cottrell MT, Moore JA, Kirchman DL.

Appl Environ Microbiol. 1999 Jun;65(6):2553-7.

40.

Molecular Identification and Localization of Filamentous Symbiotic Bacteria Associated with the Hydrothermal Vent Annelid Alvinella pompejana.

Cary SC, Cottrell MT, Stein JL, Camacho F, Desbruyeres D.

Appl Environ Microbiol. 1997 Mar;63(3):1124-30.

41.
42.

Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton.

Suttle CA, Chan AM, Cottrell MT.

Appl Environ Microbiol. 1991 Mar;57(3):721-6.

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